View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5359_low_8 (Length: 404)
Name: NF5359_low_8
Description: NF5359
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5359_low_8 |
 | |
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| [»] scaffold0061 (1 HSPs) |
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| [»] scaffold0017 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 173; Significance: 7e-93; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 173; E-Value: 7e-93
Query Start/End: Original strand, 207 - 387
Target Start/End: Complemental strand, 35899789 - 35899609
Alignment:
| Q |
207 |
ctagtgttttcaatttcccccaaaaccaagtaggtattggatctagattactgacatttgaaaggataagataggataaggagttttgtgtttgaagcca |
306 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35899789 |
ctagtgttttcaatttcccccaaaaccaagtaggtattggatctagattactgacatttgaaaggataagataggataaggagttttgtgtttgaagcca |
35899690 |
T |
|
| Q |
307 |
gttaggaaatctataatttagatttcaagatgctagattcaaatttattaatttaaagggaggaacccaatcataactaac |
387 |
Q |
| |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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|
| T |
35899689 |
gttaggaaatctataatttagattgcaagatgctagattcaaatttattaatttaaagggaggaacccagtcataactaac |
35899609 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 73 - 387
Target Start/End: Complemental strand, 44613337 - 44613023
Alignment:
| Q |
73 |
tgctttcaataaaaaagaaggaatgggaccttcaagttgatttacagccaaatgtattattggatgattggtaagattgagttccaaattaggaatcttg |
172 |
Q |
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||||| |||||||||||||||||||| |||||||| |||||| | ||||| ||| || | || |||||||||||||||||||||||||||||| || |
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| T |
44613337 |
tgcttgcaataaaaaagaaggaatggaaccttcaaactgatttgaactcaaatttatcatagtattgttggtaagattgagttccaaattaggaatcatg |
44613238 |
T |
|
| Q |
173 |
ccagtgagattgttgtttgaaatgtctaagtaagctagtgttttcaatttcccccaaaaccaagtaggtattggatctagattactgacatttgaaagga |
272 |
Q |
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|| |||| ||||||||||||||| | | | ||||||||| |||||| |||||||||||| |||| ||||| || |||||| |||||||||||| |
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| T |
44613237 |
cctgtgatattgttgtttgaaattgacatgccaactagtgtttgcaatttaccccaaaaccaaagaggtgttggagatatattactcacatttgaaaggg |
44613138 |
T |
|
| Q |
273 |
taagataggataaggagttttgtgtttgaagccagttaggaaatctataatttagatttcaagatgctagattcaaatttattaatttaaagggaggaac |
372 |
Q |
| |
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|| | |||||| ||||||||||||||||| |||||||||||| |||| | ||| ||||||| || ||| ||| ||||| ||| || ||||| |
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| T |
44613137 |
aaataatggataattcattttgtgtttgaagccaattaggaaatctagaattcatattacaagatgataagcccaatgttaataattgaaaagggggaac |
44613038 |
T |
|
| Q |
373 |
ccaatcataactaac |
387 |
Q |
| |
|
|||||||| |||||| |
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|
| T |
44613037 |
ccaatcattactaac |
44613023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 8 - 115
Target Start/End: Original strand, 11543878 - 11543985
Alignment:
| Q |
8 |
ttaattttgttgcatagaaagggaactaagtctgaaaatttattttcagaaagttgtaatgctgttgctttcaataaaaaagaaggaatgggaccttcaa |
107 |
Q |
| |
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||||| ||| |||||||||||| ||||| |||||||||||||| | || || || |||||| ||||| |||||||| ||||||||||| |||||||| |
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| T |
11543878 |
ttaatattgctgcatagaaaggacactaaatctgaaaatttattattggagagatgcaatgctactgcttgcaataaaagagaaggaatggaaccttcaa |
11543977 |
T |
|
| Q |
108 |
gttgattt |
115 |
Q |
| |
|
|||||||| |
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|
| T |
11543978 |
gttgattt |
11543985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 81 - 247
Target Start/End: Original strand, 44794953 - 44795118
Alignment:
| Q |
81 |
ataaaaaagaaggaatgggaccttcaagttgatttacagccaaatgtattattggatgattggtaagattgagttccaaattaggaatcttgccagtgag |
180 |
Q |
| |
|
||||||| |||||||||| |||||||| |||||| | ||||| ||||| ||| |||||||||||||||||||||||||||||| |||| |||| |
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| T |
44794953 |
ataaaaaggaaggaatggaaccttcaaactgatttgaactcaaatctattacaggaattttggtaagattgagttccaaattaggaatcatgcctgtgat |
44795052 |
T |
|
| Q |
181 |
attgttgtttgaaatgtctaagtaagctagtgttttcaatttcccccaaaaccaagtaggtattgga |
247 |
Q |
| |
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|||||| |||||||| | | | ||||||||| |||||| |||||||||||| |||||||||| |
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| T |
44795053 |
attgtt-tttgaaattgacatgccaactagtgtttgcaatttaccccaaaaccaaagaggtattgga |
44795118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0061 (Bit Score: 84; Significance: 8e-40; HSPs: 1)
Name: scaffold0061
Description:
Target: scaffold0061; HSP #1
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 17 - 387
Target Start/End: Original strand, 28589 - 28962
Alignment:
| Q |
17 |
ttgcatagaaagggaactaagtctgaaaatttattttcagaaagttgtaatgctgttgctttcaataaaaaagaaggaatgggaccttcaagttgattta |
116 |
Q |
| |
|
||||||||||||| |||||| |||||||||||||| | ||||| | || |||| |||| | | | || ||||||||||||| ||||| || |||||| |
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|
| T |
28589 |
ttgcatagaaaggaaactaaatctgaaaatttattattggaaagatatagtgctcttgcctgcgacaagaaagaaggaatggaacctttaaactgatttg |
28688 |
T |
|
| Q |
117 |
cagccaaatgtattattggatgattggta---agattgagttccaaattaggaatcttgccagtgagattgttgtttgaaatgtctaagtaagctagtgt |
213 |
Q |
| |
|
| ||||| ||| | |||| |||||| ||||||||||| |||||||||||| ||||||| |||||||||||||||||||| ||| || || ||| |
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|
| T |
28689 |
aaatcaaatctataaaaggattgttggtaccaagattgagttctaaattaggaatcatgccagtaagattgttgtttgaaatgtccaagctagttattgt |
28788 |
T |
|
| Q |
214 |
tttcaatttcccccaaaaccaagtaggtattggatctagattactgacatttgaaaggataagataggataaggagttttgtgtttgaagccagttagga |
313 |
Q |
| |
|
|| |||||| |||||||||||| ||||||||||| || ||||||||||||||||||| |||| |||||| ||||||||||| ||||| |||||| |
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|
| T |
28789 |
ttgcaattttccccaaaaccaaataggtattggagatatattactgacatttgaaagggaaagagtggataattcattttgtgtttggagccaattagga |
28888 |
T |
|
| Q |
314 |
aatctataatttagatttcaagatgctagattcaaatttattaatttaaagggaggaacccaatcataactaac |
387 |
Q |
| |
|
||| || |||| | ||| ||| || || | ||| | || ||||| ||| |||||||||||||||| |||||| |
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|
| T |
28889 |
aatatagaattcatattacaatttgataaacccaattctagtaattgaaaaggaggaacccaatcattactaac |
28962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0017 (Bit Score: 84; Significance: 8e-40; HSPs: 2)
Name: scaffold0017
Description:
Target: scaffold0017; HSP #1
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 17 - 387
Target Start/End: Complemental strand, 170203 - 169830
Alignment:
| Q |
17 |
ttgcatagaaagggaactaagtctgaaaatttattttcagaaagttgtaatgctgttgctttcaataaaaaagaaggaatgggaccttcaagttgattta |
116 |
Q |
| |
|
||||||||||||| |||||| |||||||||||||| | ||||| | || |||| |||| | | | || ||||||||||||| ||||| || |||||| |
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|
| T |
170203 |
ttgcatagaaaggaaactaaatctgaaaatttattattggaaagatatagtgctcttgcctgcgacaagaaagaaggaatggaacctttaaactgatttg |
170104 |
T |
|
| Q |
117 |
cagccaaatgtattattggatgattggta---agattgagttccaaattaggaatcttgccagtgagattgttgtttgaaatgtctaagtaagctagtgt |
213 |
Q |
| |
|
| ||||| ||| | |||| |||||| ||||||||||| |||||||||||| ||||||| |||||||||||||||||||| ||| || || ||| |
|
|
| T |
170103 |
aaatcaaatctataaaaggattgttggtaccaagattgagttctaaattaggaatcatgccagtaagattgttgtttgaaatgtccaagctagttattgt |
170004 |
T |
|
| Q |
214 |
tttcaatttcccccaaaaccaagtaggtattggatctagattactgacatttgaaaggataagataggataaggagttttgtgtttgaagccagttagga |
313 |
Q |
| |
|
|| |||||| |||||||||||| ||||||||||| || ||||||||||||||||||| |||| |||||| ||||||||||| ||||| |||||| |
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|
| T |
170003 |
ttgcaattttccccaaaaccaaataggtattggagatatattactgacatttgaaagggaaagagtggataattcattttgtgtttggagccaattagga |
169904 |
T |
|
| Q |
314 |
aatctataatttagatttcaagatgctagattcaaatttattaatttaaagggaggaacccaatcataactaac |
387 |
Q |
| |
|
||| || |||| | ||| ||| || || | ||| | || ||||| ||| |||||||||||||||| |||||| |
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|
| T |
169903 |
aatatagaattcatattacaatttgataaacccaattctagtaattgaaaaggaggaacccaatcattactaac |
169830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0017; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 33 - 378
Target Start/End: Complemental strand, 181274 - 180929
Alignment:
| Q |
33 |
ctaagtctgaaaatttattttcagaaagttgtaatgctgttgctttcaataaaaaagaaggaatgggaccttcaagttgatttacagccaaatgtattat |
132 |
Q |
| |
|
|||| |||||||||||||| || |||||||||| |||| ||||| ||||||||| |||||||| |||||||| |||||||| | ||||| ||| |
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|
| T |
181274 |
ctaaatctgaaaatttattatcggaaagttgtactgctcctgcttgcaataaaaataaaggaatgcaaccttcaaattgatttaaactcaaatctatatg |
181175 |
T |
|
| Q |
133 |
tggatgattggtaagattgagttccaaattaggaatcttgccagtgagattgttgtttgaaatgtctaagtaagctagtgttttcaatttcccccaaaac |
232 |
Q |
| |
|
||| ||||| || |||||||||||||||||| || |||| || |||||||||||||||||||| | || | |||||||| |||||| |||||||| |
|
|
| T |
181174 |
aggactgttggtgagtttgagttccaaattaggattcatgccggtcagattgttgtttgaaatgtccatgtcacatagtgtttgcaatttttcccaaaac |
181075 |
T |
|
| Q |
233 |
caagtaggtattggatctagattactgacatttgaaaggataagataggataaggagttttgtgtttgaagccagttaggaaatctataatttagatttc |
332 |
Q |
| |
|
|| |||||||||| |||||||||||||| ||||||| ||||||| |||| |||||||||| || ||| | |||||||||| |||| ||||| | |
|
|
| T |
181074 |
cagtgaggtattggagatagattactgacatctgaaaggtaaagatagtgtaagtgattttgtgttttaaaccaatcaggaaatctagaattcagattac |
180975 |
T |
|
| Q |
333 |
aagatgctagattcaaatttattaatttaaagggaggaacccaatc |
378 |
Q |
| |
|
|||||| |||| |||| || ||||| ||| ||||||| |||||| |
|
|
| T |
180974 |
aagatgttagacccaaactttctaattgaaaaggaggaaaccaatc |
180929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 49; Significance: 6e-19; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 82 - 386
Target Start/End: Complemental strand, 26728874 - 26728570
Alignment:
| Q |
82 |
taaaaaagaaggaatgggaccttcaagttgatttacagccaaatgtattattggatgattggtaagattgagttccaaattaggaatcttgccagtgaga |
181 |
Q |
| |
|
||||||||||||||||| |||||| ||||||||| | ||||| || | ||| || ||| ||||||||||||| || |||||| | ||| ||||| |
|
|
| T |
26728874 |
taaaaaagaaggaatggaaccttcgagttgatttgaactcaaatctagttcaagataatgggttagattgagttccatatctggaatcctaccactgaga |
26728775 |
T |
|
| Q |
182 |
ttgttgtttgaaatgtctaagtaagctagtgttttcaatttcccccaaaaccaagtaggtattggatctagattactgacatttgaaaggataagatagg |
281 |
Q |
| |
|
|||||||||||||||| || ||||||||| |||||| ||||||||||| ||||||| | | | ||||| |||||||||||| ||| | | |
|
|
| T |
26728774 |
ttgttgtttgaaatgttcaatagttctagtgtttgcaattttccccaaaaccattgaggtatttgcgccaaattacctacatttgaaagggaaagctcag |
26728675 |
T |
|
| Q |
282 |
ataaggagttttgtgtttgaagccagttaggaaatctataatttagatttcaagatgctagattcaaatttattaatttaaagggaggaacccaatcata |
381 |
Q |
| |
|
||||| |||||||||||| ||||| |||||||||||| |||| || || ||||| | |||| ||||| |||||| ||| ||||||||||||| || |
|
|
| T |
26728674 |
ataagtcgttttgtgtttggagccaattaggaaatctagaattcaggttgcaagacgttagacgcaaataacttaattgaaacggaggaacccaattatc |
26728575 |
T |
|
| Q |
382 |
actaa |
386 |
Q |
| |
|
||||| |
|
|
| T |
26728574 |
actaa |
26728570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 9 - 110
Target Start/End: Complemental strand, 8343354 - 8343253
Alignment:
| Q |
9 |
taattttgttgcatagaaagggaactaagtctgaaaatttattttcagaaagttgtaatgctgttgctttcaataaaaaagaaggaatgggaccttcaag |
108 |
Q |
| |
|
|||||||| ||||||| |||| ||||| |||||||||||||| | || || || |||||| ||||| |||||||| || ||||||| ||||||||| |
|
|
| T |
8343354 |
taattttgctgcatagtaaggaaactatatctgaaaatttattattggagagatgcaatgctactgcttgcaataaaagtgagggaatggaaccttcaag |
8343255 |
T |
|
| Q |
109 |
tt |
110 |
Q |
| |
|
|| |
|
|
| T |
8343254 |
tt |
8343253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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