View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5360-Insertion-1 (Length: 1049)
Name: NF5360-Insertion-1
Description: NF5360
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5360-Insertion-1 |
 | |
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Alignment Details
Target: chr7 (Bit Score: 565; Significance: 0; HSPs: 6)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 565; E-Value: 0
Query Start/End: Original strand, 221 - 902
Target Start/End: Complemental strand, 4903734 - 4903050
Alignment:
| Q |
221 |
tgaaaacgataaagcctagacatgatagtccctaaatgcccatattttcttcttcttaaaagagcagtgtattctaatattttaattctcaagcactaat |
320 |
Q |
| |
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||||||||||||||| |||||||||||||||||||||||||| ||||||| |||||||||||| || |||| ||||||| |||||||| ||||||| |
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| T |
4903734 |
tgaaaacgataaagcttagacatgatagtccctaaatgcccagattttctccttcttaaaagaccaaaatatttgaatatttccattctcaaacactaat |
4903635 |
T |
|
| Q |
321 |
tatgaaagaaaattattgaataactaaaatagtatatgcaagttttgtcgataatttctgaagttaagttagacaaaatggttttgttgacaggttcgac |
420 |
Q |
| |
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||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||| ||||||||||||| |||||||||||||| |
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| T |
4903634 |
tatgaaagaaatttattgaataactaaaatggtatatgcaagttttgtcgataatttctgacgttaagttacacaaaatggttttattgacaggttcgac |
4903535 |
T |
|
| Q |
421 |
tggccatggatacatggcgccagagtgtgtccgaaccaatacattcacagataaatgtgatgtttattcttttggtatggttctaattgaagtagcaggc |
520 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4903534 |
tggccatggatacatggcgccagagtgtgtccgaaccaatacattcacagataaatgtgatgtttattcttttggtatggttctaattgaagtagcaggc |
4903435 |
T |
|
| Q |
521 |
acaaattataagaatactatctttgataagatggtcatgttagagaacaaagatcggtttttagaaaagtcatcgaatccagctaactttctggagaggt |
620 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
4903434 |
acaaattataagaatactatctttgataagatggtcatgttagagaacaaagatcggtttttagaaaagtcatcgaatccagctaactttttggagaggt |
4903335 |
T |
|
| Q |
621 |
tccctgctgataagattattgatcccattctcatgagattgattgcgccgcaatgtttggaagtgttcatggatatcatgaaaagatgcttgaatataga |
720 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4903334 |
tccctgctgataagattattgatcccattctcatgagattaatagcgccgcaatgtttggcagtgttcatggatatcatgaaaagatgcttgaatataga |
4903235 |
T |
|
| Q |
721 |
tccaaatgaaagaccagctatgggtgaggttgaggtcgaacttgagaatgctctagcactgcaggaggaagcagattgtgggaaaagtaatggtgatttt |
820 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4903234 |
accaaatgaaagaccagctatgggtgaggttgaggtcgaacttgagcatgctctagcactgcaggaggaagcagattgtgggaaaagtaatggtgatttt |
4903135 |
T |
|
| Q |
821 |
taactttttcc-accatcaattctacctagttaaccaccgtaagc-tccaattt-ggatgagaataaattttatggattcctttt |
902 |
Q |
| |
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||||||||||| |||||||||||||||||||||||||| |||||| |||||||| |||||||||||||||||||||||||||||| |
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|
| T |
4903134 |
taactttttccaaccatcaattctacctagttaaccactgtaagcttccaatttgggatgagaataaattttatggattcctttt |
4903050 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 275; E-Value: 1e-153
Query Start/End: Original strand, 431 - 895
Target Start/End: Complemental strand, 4906901 - 4906435
Alignment:
| Q |
431 |
tacatggcgccagagtgtgtccgaaccaatacattcacagataaatgtgatgtttattcttttggtatggttctaattgaagtagcaggcacaaattata |
530 |
Q |
| |
|
|||||||| || ||| ||||| |||||| || ||||||||||||| ||| ||||| || ||||||||||||||| || |||||||| |||||||||| | |
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|
| T |
4906901 |
tacatggcagcaaagtatgtcctaaccaacactttcacagataaatctgacgtttactcctttggtatggttctacttcaagtagcatgcacaaattaca |
4906802 |
T |
|
| Q |
531 |
agaatactatctttgataagatggtcatgttagagaacaaagatcggtttttagaaaagtcatcgaatccagctaactttctggagaggttccctgctga |
630 |
Q |
| |
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||||||| ||||| ||||||||| |||||||||| ||| | || |||||| ||||||||||| ||||||||||||||| ||||||||||||| ||| | |
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|
| T |
4906801 |
agaataccatcttcgataagatgatcatgttagatgacacatattggttttcagaaaagtcatttaatccagctaactttttggagaggttcccagctaa |
4906702 |
T |
|
| Q |
631 |
taagattattgatcccattctcatgagattgattgcgccgcaatgtttggaagtgttcatggatatcatgaaaagatgcttgaatatagatccaaatgaa |
730 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
4906701 |
tgagattattgatcccattctcatgagattgattgcgccgcaatgtttggaagtgttcatggatatcatgaaaagatgcttgaatatagaaccaaatgaa |
4906602 |
T |
|
| Q |
731 |
agaccagctatgggtgaggttgaggtcgaacttgagaatgctctagcactgcaggaggaagcagattgtgggaaaagtaatggtgatttttaactttttc |
830 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||| | |||||||||||||||||||||||| |||||||||| ||||||||| ||||||| |
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|
| T |
4906601 |
agaccagctatgggtgaggttgaggtcgaacttgagcatgctctggaactgcaggaggaagcagattgtggaaaaagtaatgatgatttttacctttttc |
4906502 |
T |
|
| Q |
831 |
c-accatcaattctacctagttaaccaccgtaagctccaattt-ggatgagaataaattttatggat |
895 |
Q |
| |
|
| | || || ||||||||| |||||||| ||||||||| |||| || |||||||||||||||||||| |
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|
| T |
4906501 |
caagcaccagttctacctaattaaccacggtaagctcccatttgggctgagaataaattttatggat |
4906435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 129; E-Value: 3e-66
Query Start/End: Original strand, 431 - 806
Target Start/End: Original strand, 5822739 - 5823114
Alignment:
| Q |
431 |
tacatggcgccagagtgtgtccgaaccaatacattcacagataaatgtgatgtttattcttttggtatggttctaattgaagtagcaggcacaaattata |
530 |
Q |
| |
|
|||||||| ||||||| ||||||||||||||| ||||||||||||||||||||||| || ||||||||||||||| |||||| || | | ||||| || | |
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|
| T |
5822739 |
tacatggcaccagagtatgtccgaaccaatactttcacagataaatgtgatgtttactcctttggtatggttctacttgaagcagtatgtacaaactaca |
5822838 |
T |
|
| Q |
531 |
agaatactatctttgataagatggtcatgttagagaacaaagatcggtttttagaaaagtc-atcgaatccagctaactttctggagaggttccctgctg |
629 |
Q |
| |
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| |||| ||||||||||||||| | | ||||| || | || ||||||||| | | | ||| |||||| ||| |||||||||| | ||| |
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|
| T |
5822839 |
aatataccatctttgataagatgaacgtattagataatccaaatatatttttagaacggccgaatgaagt-agctaaatttttggagaggtttgcagctt |
5822937 |
T |
|
| Q |
630 |
ataagattattgatcccattctcatgagattgattgcgccgcaatgtttggaagtgttcatggatatcatgaaaagatgcttgaatatagatccaaatga |
729 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||| |||||| | |||||||||||| ||||||||| ||||||||||||||| ||||| || |
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|
| T |
5822938 |
atgagattattgatcccattctcatgagattgattgcgccgtggtgtttgaaggtgttcatggatgtcatgaaaaaatgcttgaatatagacccaaacga |
5823037 |
T |
|
| Q |
730 |
aagaccagctatgggtgaggttgaggtcgaacttgagaatgctctagcactgcaggaggaagcagattgtgggaaaa |
806 |
Q |
| |
|
||||||||| ||||| ||||||||||| ||||| ||| ||||||||||||||||||||||| ||||| |||||||| |
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|
| T |
5823038 |
aagaccagcaatgggcgaggttgaggttgaactcgagcatgctctagcactgcaggaggaaacagatgatgggaaaa |
5823114 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 114; E-Value: 3e-57
Query Start/End: Original strand, 614 - 810
Target Start/End: Original strand, 4923900 - 4924099
Alignment:
| Q |
614 |
gagaggttccctgctgataagattattgatcccattctcatgagattgattgcgccgcaatgtttggaagtgttcatggatatcatgaaaagatgcttga |
713 |
Q |
| |
|
||||||||||| ||||| | ||||||||||||||||||||||||||||| |||||||||||||||| |||||| ||| ||||||||||||||||||||| |
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|
| T |
4923900 |
gagaggttcccagctgacgaaattattgatcccattctcatgagattgatagcgccgcaatgtttggcagtgtttatgaatatcatgaaaagatgcttga |
4923999 |
T |
|
| Q |
714 |
ata---tagatccaaatgaaagaccagctatgggtgaggttgaggtcgaacttgagaatgctctagcactgcaggaggaagcagattgtgggaaaagtaa |
810 |
Q |
| |
|
||| ||| ||||||||||||||| | ||||||||||||||||| ||||||||| ||||| | ||||||||||||||||||||| ||||| ||||||| |
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|
| T |
4924000 |
atagtggagaaccaaatgaaagaccaacaatgggtgaggttgaggttgaacttgagcatgctttggcactgcaggaggaagcagatcgtggggaaagtaa |
4924099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 108; E-Value: 1e-53
Query Start/End: Original strand, 8 - 119
Target Start/End: Complemental strand, 4903979 - 4903868
Alignment:
| Q |
8 |
gattaaactcgacaacgatgaactccacaacattattggtaatttgttttcttttatttttagaggaagcattgaaattaggtatagtattctggtttaa |
107 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
4903979 |
gattaaactcgacaacgatgaactccacaacattattggtaatttgttttcttttatttttagaggaagcattgaaattaggtatagaattctggtttaa |
4903880 |
T |
|
| Q |
108 |
actgttgtgtgc |
119 |
Q |
| |
|
|||||||||||| |
|
|
| T |
4903879 |
actgttgtgtgc |
4903868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 606 - 795
Target Start/End: Original strand, 4929227 - 4929419
Alignment:
| Q |
606 |
actttctggagaggttccctgctgataagattattgatcccattctcatgagattgattgcgccgcaatgtttggaagtgttcatggatatcatgaaaag |
705 |
Q |
| |
|
||||||| ||||||||||| |||||| | ||||||||||| ||||||| |||||||||| | ||| ||||||||| ||||||| | ||||||||||||| |
|
|
| T |
4929227 |
actttctagagaggttcccagctgatgaaattattgatccaattctcacgagattgatttcaccggaatgtttggcagtgttcgtcaatatcatgaaaag |
4929326 |
T |
|
| Q |
706 |
atgcttgaata---tagatccaaatgaaagaccagctatgggtgaggttgaggtcgaacttgagaatgctctagcactgcaggaggaagcaga |
795 |
Q |
| |
|
||||||||||| ||| |||||||||||||| | ||||||||||||||||| ||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
4929327 |
atgcttgaatagagaagaaccaaatgaaagaccttcaatgggtgaggttgaggttgaacttgagcatgctctagcactgcaggaggaagcaga |
4929419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 913 - 1008
Target Start/End: Original strand, 16194951 - 16195055
Alignment:
| Q |
913 |
gggagcacaatccttcttctctcatttaat-atc-atatat-aatgaaaccc-atttagtta--ggagac-agstatttcatgt-agtgt-acatgtatt |
1003 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||| |||||| |||||||||| ||||||||| | |||| || |||||||||| ||||| ||||||||| |
|
|
| T |
16194951 |
gggagcacaatccttcttctctcatttaataatcaatatataaatgaaacccaatttagttaaggaagactaggtatttcatgtaagtgtaacatgtatt |
16195050 |
T |
|
| Q |
1004 |
aaact |
1008 |
Q |
| |
|
||||| |
|
|
| T |
16195051 |
aaact |
16195055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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