View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5360-Insertion-10 (Length: 143)
Name: NF5360-Insertion-10
Description: NF5360
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5360-Insertion-10 |
 | |
|
| [»] chr1 (5 HSPs) |
| |
|
Alignment Details
Target: chr1 (Bit Score: 132; Significance: 6e-69; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 132; E-Value: 6e-69
Query Start/End: Original strand, 8 - 143
Target Start/End: Complemental strand, 33412046 - 33411911
Alignment:
| Q |
8 |
acatttgttccaagtacaatgatggctcaagtaaacaccctttttgtaaaacaaggaacaacacttgacagacacattggaagcttcaaaattccaccag |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33412046 |
acatttgttccaagtacaatgatggctcaagtaaacaccctttttgtaaaacaaggaacaacacttgacagacacattggaagcttcaaaattccaccag |
33411947 |
T |
|
| Q |
108 |
caagtttagctgcatttgtcacattgtctttgcttg |
143 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||| |
|
|
| T |
33411946 |
caagtttagctgcatttgtcacattgtccttgcttg |
33411911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 59; E-Value: 2e-25
Query Start/End: Original strand, 6 - 124
Target Start/End: Original strand, 15766274 - 15766392
Alignment:
| Q |
6 |
caacatttgttccaagtacaatgatggctcaagtaaacaccctttttgtaaaacaaggaacaacacttgacagacacattggaagcttcaaaattccacc |
105 |
Q |
| |
|
|||||||| |||||||| ||||||| |||||| |||| ||||||||||||||||||||||| || ||| ||||| |||||| | |||| | |||||||| |
|
|
| T |
15766274 |
caacatttattccaagtgcaatgatagctcaaataaataccctttttgtaaaacaaggaactactcttaacagatccattggcaacttccatattccacc |
15766373 |
T |
|
| Q |
106 |
agcaagtttagctgcattt |
124 |
Q |
| |
|
| ||||||||||||||||| |
|
|
| T |
15766374 |
atcaagtttagctgcattt |
15766392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 52; E-Value: 3e-21
Query Start/End: Original strand, 15 - 126
Target Start/End: Original strand, 15729696 - 15729807
Alignment:
| Q |
15 |
ttccaagtacaatgatggctcaagtaaacaccctttttgtaaaacaaggaacaacacttgacagacacattggaagcttcaaaattccaccagcaagttt |
114 |
Q |
| |
|
|||| ||||||||||| |||||| |||| || | ||||| |||||||||||||||||||| ||| |||||| || ||||||||||||||||||||||| |
|
|
| T |
15729696 |
ttcctagtacaatgattgctcaaataaatacattgtttgtgaaacaaggaacaacacttgatagaggcattgggagtttcaaaattccaccagcaagttt |
15729795 |
T |
|
| Q |
115 |
agctgcatttgt |
126 |
Q |
| |
|
|| | ||||||| |
|
|
| T |
15729796 |
aggtacatttgt |
15729807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 50; E-Value: 5e-20
Query Start/End: Original strand, 5 - 126
Target Start/End: Original strand, 15737289 - 15737410
Alignment:
| Q |
5 |
acaacatttgttccaagtacaatgatggctcaagtaaacaccctttttgtaaaacaaggaacaacacttgacagacacattggaagcttcaaaattccac |
104 |
Q |
| |
|
|||||||| |||| ||||||||| | |||||| |||| || || ||||| || ||||||||||||||||| ||| ||||||| || ||| ||||||||| |
|
|
| T |
15737289 |
acaacattaattcctagtacaatggttgctcaaataaatacactctttgtgaagcaaggaacaacacttgatagagacattgggagtttccaaattccac |
15737388 |
T |
|
| Q |
105 |
cagcaagtttagctgcatttgt |
126 |
Q |
| |
|
|||||||||||| | ||||||| |
|
|
| T |
15737389 |
cagcaagtttaggtacatttgt |
15737410 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 43; E-Value: 8e-16
Query Start/End: Original strand, 8 - 122
Target Start/End: Original strand, 15755407 - 15755521
Alignment:
| Q |
8 |
acatttgttccaagtacaatgatggctcaagtaaacaccctttttgtaaaacaaggaacaacacttgacagacacattggaagcttcaaaattccaccag |
107 |
Q |
| |
|
|||||| |||||||| ||||||| |||||| |||| |||||||| ||||||||||||| || ||| ||||| |||||| | ||| ||| |||| |||| |
|
|
| T |
15755407 |
acatttattccaagtgcaatgattgctcaaataaatacccttttcataaaacaaggaactactcttaacagatccattggcaacttaaaagttcctccag |
15755506 |
T |
|
| Q |
108 |
caagtttagctgcat |
122 |
Q |
| |
|
|||||||| |||||| |
|
|
| T |
15755507 |
caagtttaactgcat |
15755521 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University