View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5360-Insertion-2 (Length: 1021)

Name: NF5360-Insertion-2
Description: NF5360
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5360-Insertion-2
NF5360-Insertion-2
[»] chr1 (6 HSPs)
chr1 (8-1021)||(46915476-46916491)
chr1 (415-538)||(22023123-22023249)
chr1 (518-583)||(28108179-28108244)
chr1 (409-539)||(25993056-25993188)
chr1 (414-538)||(68935-69060)
chr1 (471-582)||(42787611-42787722)
[»] chr2 (7 HSPs)
chr2 (414-583)||(27249740-27249910)
chr2 (414-558)||(5357574-5357719)
chr2 (469-582)||(29923843-29923955)
chr2 (414-582)||(11915371-11915540)
chr2 (444-530)||(4964096-4964184)
chr2 (507-558)||(29699532-29699582)
chr2 (469-503)||(29927758-29927792)
[»] chr4 (7 HSPs)
chr4 (414-539)||(18489605-18489731)
chr4 (414-583)||(21512003-21512173)
chr4 (414-583)||(24699348-24699518)
chr4 (407-583)||(43148842-43149017)
chr4 (414-538)||(12868415-12868541)
chr4 (493-564)||(26591187-26591260)
chr4 (409-463)||(28752839-28752893)
[»] chr8 (7 HSPs)
chr8 (477-582)||(9780418-9780522)
chr8 (408-583)||(42456827-42457003)
chr8 (481-586)||(38753713-38753817)
chr8 (415-461)||(16677138-16677184)
chr8 (476-570)||(41581097-41581190)
chr8 (469-554)||(31645152-31645236)
chr8 (427-583)||(5920767-5920924)
[»] chr7 (4 HSPs)
chr7 (410-459)||(5897668-5897717)
chr7 (471-524)||(21836043-21836096)
chr7 (419-497)||(6687773-6687853)
chr7 (468-582)||(7682721-7682834)
[»] chr3 (6 HSPs)
chr3 (414-554)||(39028108-39028249)
chr3 (415-582)||(54524927-54525095)
chr3 (414-531)||(48723335-48723454)
chr3 (466-539)||(27844643-27844716)
chr3 (414-583)||(51380944-51381110)
chr3 (469-502)||(29570379-29570412)
[»] chr6 (5 HSPs)
chr6 (409-539)||(21610998-21611130)
chr6 (469-539)||(27177005-27177075)
chr6 (507-539)||(10498145-10498177)
chr6 (408-463)||(33629342-33629397)
chr6 (444-531)||(33929905-33929994)
[»] chr5 (2 HSPs)
chr5 (410-583)||(10315695-10315869)
chr5 (409-459)||(37283766-37283816)


Alignment Details
Target: chr1 (Bit Score: 836; Significance: 0; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 836; E-Value: 0
Query Start/End: Original strand, 8 - 1021
Target Start/End: Complemental strand, 46916491 - 46915476
Alignment:
Q  8 tctggtacctaaaccccatgtgttctaaagggnnnnnnnncttacctaaaccaactacctttaatatataattaaaactactttagcatacagaacgata 107  Q
    ||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  46916491 tctggtacctaaaccccatgtgttctaaagggaaaaaaaacttacctaaaccaactacctttaatctataattaaaactactttagcatacagaacgata 46916392  T
Q  108 agagtgtctattcttttgctatagttgttgaagctctctctttggatactcttggtttgtccccaaagcttccctacataatacattaaataaatagcaa 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46916391 agagtgtctattcttttgctatagttgttgaagctctctctttggatactcttggtttgtccccaaagcttccctacataatacattaaataaatagcaa 46916292  T
Q  208 ttattaagcagtgtgtaaaccataaatatctattttaatgtcatcctttttatgcccagcgcaaattttgagttcttcaaccttagttcttggcttggcc 307  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  46916291 ttattaagcagtgtgtaaaccataaatatctattttaatgtcatcccttttatgcccagcgcaaattttgagttcttcaactttagttcttggcttggcc 46916192  T
Q  308 at-----ggaccaactgggaatttcggaccttacaaagcattggctattggatc-ttcagatttctttcttttggagctttgactcatctattcaaatgc 401  Q
    ||     ||||||||||||||||| |||||||||||||||||||| |||||||| || |||||| ||||||||||||||||||||||||||||||||| |    
T  46916191 attttatggaccaactgggaattttggaccttacaaagcattggccattggatcatttagatttgtttcttttggagctttgactcatctattcaaatac 46916092  T
Q  402 ttatctaagaataatgttgttcacatttcactcgatgataggaaacaccagtaatttaccaa-atatttcatcggcagttaactgcagatggattttaac 500  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||     
T  46916091 ttatctaagaataatgttgttcacatttcactcgatgataggaaacaccagtaatttaccaatatatttcatcggcagttaactgcagatggatttcaat 46915992  T
Q  501 cgaaaacagttaactgtcgatgaacatttacgtcttttttctggtttgtttcagccttagttgaagtgtatacaacaattttccttatctaattgataat 600  Q
    |||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  46915991 cgaaaacagttaactgtcgatgaacatttacgtcttttttttggtgtgtttcagccttagttgaagtatatacaacaattttccttatctaattgataat 46915892  T
Q  601 ttcctacaacaaaaaacaactccattagaatgaatcttttagaatttgagttggagcaaattcaaccctaacaaaatcagtttgtaatgtatggaatgta 700  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||    
T  46915891 ttcctacaacaaaaaacaactccattagaatgaatcttttagaatttgagttggagcaaattcaaccctaacaaaattagtttgtaatgtatgggatgta 46915792  T
Q  701 actttttataaattcatttaagtttttctaggtaaaatttgagttttttccgatacaccctatcacgcaatcactaatgaatttggttcataattataat 800  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||    
T  46915791 actttttataaattcatttaagtttttctaggtaaaatttgagttttttccgatacaccctatcacgcaatcactaatgaatttggttcataatt---at 46915695  T
Q  801 aaatgttgggtgacctagatcaatagactttgatagctgtaacctatcggagtggcagaatggatattggatagactatgattctatttgggttgaacat 900  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  46915694 aaatgttgggtgacctagatcaatagactttgatagcggtaacctatcggagtggcagaatgcatattggatagactatgattctatttgggttgaacat 46915595  T
Q  901 caacccttataaaaccggtatatatgtagagtgagagatatcactttattatgcgtgactt-aaattttcctaatagaatctaatcggtaagtcttgatg 999  Q
    ||||||||||||||||||    |||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  46915594 caacccttataaaaccgg----tatgtaaagtgagagatatcactttattatgcgtgacttaaaattttcctaatagaatctaatcggtaagtcttgatg 46915499  T
Q  1000 cc-tggtatataaacagtagttg 1021  Q
    || | ||||||||||| ||||||    
T  46915498 ccttagtatataaacaatagttg 46915476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 47; E-Value: 3e-17
Query Start/End: Original strand, 415 - 538
Target Start/End: Original strand, 22023123 - 22023249
Alignment:
Q  415 atgttgttcacatttcactcgatgataggaaacaccagtaatttaccaa-atatt-tcatcggcagttaactgcagatgga-ttttaaccgaaaacagtt 511  Q
    |||||||||||| ||||||| ||| | | |||||||||||||||||| | |||   |||||||||||||||||| |||||| ||||||||||  ||||||    
T  22023123 atgttgttcacacttcactcaatgctggaaaacaccagtaatttacctatataacctcatcggcagttaactgccgatggatttttaaccgacgacagtt 22023222  T
Q  512 aactgtcgatgaacatttacgtctttt 538  Q
    ||||||||| | ||| |||||||||||    
T  22023223 aactgtcgacggacaattacgtctttt 22023249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 518 - 583
Target Start/End: Original strand, 28108179 - 28108244
Alignment:
Q  518 cgatgaacatttacgtcttttttctggtttgtttcagccttagttgaagtgtatacaacaattttc 583  Q
    |||||||||||||||||||||||||||||||||||||||||  | |||||||  ||||||||||||    
T  28108179 cgatgaacatttacgtcttttttctggtttgtttcagccttgttagaagtgtgaacaacaattttc 28108244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 409 - 539
Target Start/End: Complemental strand, 25993188 - 25993056
Alignment:
Q  409 agaataatgttgttcacatttcactcgatgataggaaacaccagtaatttaccaaatat---ttcatcggcagttaactgcagatggattttaaccgaaa 505  Q
    |||| ||||||||||||| |||| || ||| ||| |||||  |||||||||  ||||||   |||| || ||||||||||  |||| ||||||| |||||    
T  25993188 agaagaatgttgttcacacttcattcaatgttagaaaacataagtaatttat-aaatataacttcaccgacagttaactgtcgatgtattttaatcgaaa 25993090  T
Q  506 acagttaactgtcgatgaacatttacgtcttttt 539  Q
    |||||||||||  || ||||||||||||||||||    
T  25993089 acagttaactgctgaagaacatttacgtcttttt 25993056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 414 - 538
Target Start/End: Complemental strand, 69060 - 68935
Alignment:
Q  414 aatgttgttcacatttcactcgatgataggaaacaccagtaatttaccaa-atatt-tcatcggcagttaactgcagatggattttaaccgaaaacagtt 511  Q
    ||||||||||||| ||||||| ||| ||||| |||| ||||||||| ||| |||   ||||||| |||||| ||  |||| |||||||||||  ||||||    
T  69060 aatgttgttcacacttcactcaatgctaggacacactagtaatttatcaatataacatcatcggtagttaagtgt-gatgaattttaaccgacgacagtt 68962  T
Q  512 aactgtcgatgaacatttacgtctttt 538  Q
    ||||||||||  |||||||||||||||    
T  68961 aactgtcgatagacatttacgtctttt 68935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 471 - 582
Target Start/End: Original strand, 42787611 - 42787722
Alignment:
Q  471 atcggcagttaac-tgcagatggattttaaccgaaaacagttaactgtcgatgaacatttacgtcttttttctggtttgtttcagccttagttgaagtgt 569  Q
    ||||||||||||| ||| ||||||||||||||||   || |||||||| |||  | |||||||| ||||||||||| ||||| || |||  | |||||||    
T  42787611 atcggcagttaacatgccgatggattttaaccgacggcaattaactgttgatacatatttacgttttttttctggtgtgttttag-cttgttagaagtgt 42787709  T
Q  570 atacaacaatttt 582  Q
    |||||||||||||    
T  42787710 atacaacaatttt 42787722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 56; Significance: 1e-22; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 56; E-Value: 1e-22
Query Start/End: Original strand, 414 - 583
Target Start/End: Complemental strand, 27249910 - 27249740
Alignment:
Q  414 aatgttgttcacatttcactcgatgataggaaacaccagtaatttaccaa-atat-ttcatcggcagttaactgcagatggattttaaccgaaaacagtt 511  Q
    ||||||||||||| ||||||| ||| |||||||||| ||||||||| ||| |||  ||||||  ||||||||  | ||||||||||||| |    |||||    
T  27249910 aatgttgttcacacttcactcaatgttaggaaacactagtaatttatcaatataacttcatcatcagttaaccaccgatggattttaacaggcggcagtt 27249811  T
Q  512 aactgtcgatgaacatttacgtcttttttctggtttgtttcagccttagttgaagtgtatacaacaattttc 583  Q
    ||||| ||||| |||||||| ||||||| | ||| ||||||||||||  |||||||||||||||||||||||    
T  27249810 aactgccgatggacatttacatctttttcc-ggtgtgtttcagccttgtttgaagtgtatacaacaattttc 27249740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 414 - 558
Target Start/End: Complemental strand, 5357719 - 5357574
Alignment:
Q  414 aatgttgttcacatttcactcgatgataggaaacaccagtaatttaccaa-atatt-tcatcggcagttaactgcagatggattttaaccgaaaacagtt 511  Q
    ||||||||||||| ||||||| ||| |   |||||| ||||||||||||| |||   |||||||||||||||||  |||||| ||||||||  |||||||    
T  5357719 aatgttgttcacacttcactcaatgttgaaaaacactagtaatttaccaatataacctcatcggcagttaactgtcgatggaatttaaccggcaacagtt 5357620  T
Q  512 aactgtcgatgaacatttacgtcttttttctggtttgtttcagcctt 558  Q
    ||||||||||| |||||||||||| |||||| || ||||||||||||    
T  5357619 aactgtcgatggacatttacgtct-ttttctagtgtgtttcagcctt 5357574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 1e-16
Query Start/End: Original strand, 469 - 582
Target Start/End: Complemental strand, 29923955 - 29923843
Alignment:
Q  469 tcatcggcagttaactgcagatggattttaaccgaaaacagttaactgtcgatgaacatttacgtcttttttctggtttgtttcagccttagttgaagtg 568  Q
    |||||||||||||| ||| |||||||||||||||    ||||||||||||||| |||||||| ||| |||||||| | |||||||||||||    | |||    
T  29923955 tcatcggcagttaattgctgatggattttaaccggcggcagttaactgtcgataaacatttatgtc-tttttctgttgtgtttcagccttatcacatgtg 29923857  T
Q  569 tatacaacaatttt 582  Q
    ||||||||||||||    
T  29923856 tatacaacaatttt 29923843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 414 - 582
Target Start/End: Complemental strand, 11915540 - 11915371
Alignment:
Q  414 aatgttgttcacatttcactcgatgataggaaacaccagtaatttaccaa-atatt-tcatcggcagttaactgcagatggattttaaccgaaaacagtt 511  Q
    ||||||||||||||||||||| ||||||  |||||| | |||||||  || ||| | | || |||||||||  |  |||||||||||||||  |  ||||    
T  11915540 aatgttgttcacatttcactcaatgataaaaaacactaataatttataaatataatcttattggcagttaatcgttgatggattttaaccggcagtagtt 11915441  T
Q  512 aactgtcgatgaacatttacgtcttttttctggtttgtttcagccttagttgaagtgtatacaacaatttt 582  Q
    |||||||||||||||||||| | ||||||||||| |||||||| |||  | ||||||| |||| |||||||    
T  11915440 aactgtcgatgaacatttacat-ttttttctggtgtgtttcagtcttgttagaagtgtgtacaccaatttt 11915371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 444 - 530
Target Start/End: Complemental strand, 4964184 - 4964096
Alignment:
Q  444 aaacaccagtaatttaccaa-atatt-tcatcggcagttaactgcagatggattttaaccgaaaacagttaactgtcgatgaacattta 530  Q
    ||||||||||||||||| || ||| | ||||||||||||||||||  ||||||||||||||| |  |||||||||| |||||| |||||    
T  4964184 aaacaccagtaatttactaatataatctcatcggcagttaactgctaatggattttaaccgacagtagttaactgttgatgaaaattta 4964096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 507 - 558
Target Start/End: Complemental strand, 29699582 - 29699532
Alignment:
Q  507 cagttaactgtcgatgaacatttacgtcttttttctggtttgtttcagcctt 558  Q
    |||||||||| ||||| |||||||||||| ||||||||| ||||||||||||    
T  29699582 cagttaactgccgatggacatttacgtct-ttttctggtgtgtttcagcctt 29699532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 469 - 503
Target Start/End: Original strand, 29927758 - 29927792
Alignment:
Q  469 tcatcggcagttaactgcagatggattttaaccga 503  Q
    |||||||||||||||||| ||||||||||||||||    
T  29927758 tcatcggcagttaactgctgatggattttaaccga 29927792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 52; Significance: 3e-20; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 414 - 539
Target Start/End: Original strand, 18489605 - 18489731
Alignment:
Q  414 aatgttgttcacatttcactcgatgataggaaacaccagtaatttaccaa-ata-tttcatcggcagttaactgcagatggattttaaccgaaaacagtt 511  Q
    ||||||||||| | ||||||| ||| || ||||||| ||||||||||||| ||| |||||||||||||||||||| ||||||||||||||||   |||||    
T  18489605 aatgttgttcatacttcactcaatgttaagaaacactagtaatttaccaatataatttcatcggcagttaactgctgatggattttaaccgacggcagtt 18489704  T
Q  512 aactgtcgatgaacatttacgtcttttt 539  Q
    |||||| |||  ||||||| ||||||||    
T  18489705 aactgt-gatagacatttatgtcttttt 18489731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 414 - 583
Target Start/End: Original strand, 21512003 - 21512173
Alignment:
Q  414 aatgttgttcacatttcactcgatgataggaaacaccagtaatttaccaa-at-atttcatcggcagttaactgcagatggattttaaccgaaaacagtt 511  Q
    ||||||||||||| ||||||| ||| |||||||||| | ||||||| ||| || | || |||||||||||||||  |||  ||||||||||    |||||    
T  21512003 aatgttgttcacacttcactcaatgctaggaaacactactaatttatcaatataactttatcggcagttaactgttgatcaattttaaccggctgcagtt 21512102  T
Q  512 aactgtcgatgaacatttacgtcttttttctggtttgtttcagccttagttgaagtgtatacaacaattttc 583  Q
    |||||  |||| ||||||||||| |||||||||| ||||||| ||||  || ||||||  ||||||||||||    
T  21512103 aactgctgatggacatttacgtc-tttttctggtgtgtttcatccttgtttaaagtgtcaacaacaattttc 21512173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 414 - 583
Target Start/End: Complemental strand, 24699518 - 24699348
Alignment:
Q  414 aatgttgttcacatttcactcgatgataggaaacaccagtaatttaccaa-atatt-tcatcggcagttaactgcagatggattttaaccgaaaacagtt 511  Q
    |||||| |||||| |||| || ||  |||||||||| ||||||||| ||| |||   ||||||| |||||||||| ||||||||||||| |    |||||    
T  24699518 aatgttcttcacacttcaatcaattctaggaaacactagtaatttatcaacataacatcatcggtagttaactgccgatggattttaactggcggcagtt 24699419  T
Q  512 aactgtcgatgaacatttacgtcttttttctggtttgtttcagccttagttgaagtgtatacaacaattttc 583  Q
    ||||| ||||| |||||||||||| ||||||||| ||||| |||| |  ||||| |||| ||||||||||||    
T  24699418 aactggcgatggacatttacgtct-ttttctggtatgttttagccctgtttgaattgtaaacaacaattttc 24699348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 407 - 583
Target Start/End: Original strand, 43148842 - 43149017
Alignment:
Q  407 taagaataatgttgttcacatttcactcgatgataggaaacaccagtaatttaccaa-atatt-tcatcggcagttaactgcagatggattttaaccgaa 504  Q
    |||||||||||||||||||| |||| |  ||| ||| |||||||| |  |||||||| |||   |||||||||||||| ||  ||||||||| ||||||     
T  43148842 taagaataatgttgttcacacttcagttaatgctagaaaacaccaat--tttaccaatataacctcatcggcagttaattgtcgatggatttcaaccgac 43148939  T
Q  505 aacagttaactgtcgatgaacatttacgtcttttttctggtttgtttcagccttagttgaagtgtatacaacaattttc 583  Q
    | ||||||| |   ||    ||||||||| ||||||||||| ||||||||||||||||||| |||||||||||||||||    
T  43148940 agcagttaaatactgaatgtcatttacgt-ttttttctggtgtgtttcagccttagttgaattgtatacaacaattttc 43149017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 414 - 538
Target Start/End: Original strand, 12868415 - 12868541
Alignment:
Q  414 aatgttgttcacatttcactcgatgataggaaacaccagtaatttaccaa-atatt-tcatcggcagttaactgcagatggattttaaccgaaaacagtt 511  Q
    ||||||||||||| ||||||| ||| ||| |||||  ||||||||| ||| ||| | |||||  ||||||||| | |||| |||| ||||||  ||||||    
T  12868415 aatgttgttcacacttcactcaatgttagaaaacattagtaatttatcaatataatctcatcatcagttaactaccgatgaatttaaaccgacgacagtt 12868514  T
Q  512 aactgtcgatgaacatttacgtctttt 538  Q
    |||||||||| ||||| ||||| ||||    
T  12868515 aactgtcgataaacatgtacgtgtttt 12868541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 493 - 564
Target Start/End: Complemental strand, 26591260 - 26591187
Alignment:
Q  493 attttaaccgaaaacagttaactgtcgatgaacatttacg--tcttttttctggtttgtttcagccttagttga 564  Q
    ||||||||||| | ||||||||| |||||||||||||| |  | ||||||||||| ||||| |||||| |||||    
T  26591260 attttaaccgacagcagttaactatcgatgaacatttatgttttttttttctggtgtgtttaagcctttgttga 26591187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 409 - 463
Target Start/End: Original strand, 28752839 - 28752893
Alignment:
Q  409 agaataatgttgttcacatttcactcgatgataggaaacaccagtaatttaccaa 463  Q
    |||||||||||||||||| ||||||| ||| || |||| |||| |||||||||||    
T  28752839 agaataatgttgttcacacttcactcaatggtaagaaataccattaatttaccaa 28752893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 50; Significance: 4e-19; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 477 - 582
Target Start/End: Original strand, 9780418 - 9780522
Alignment:
Q  477 agttaactgcagatggattttaaccgaaaacagttaactgtcgatgaacatttacgtcttttttctggtttgtttcagccttagttgaagtgtatacaac 576  Q
    |||||||||| |||| |||||||||||  |||||||||||  |||||| |||||  ||||||| ||||| |||||||| ||||||||||||||||||| |    
T  9780418 agttaactgccgatgaattttaaccgacgacagttaactgctgatgaatatttatatcttttt-ctggtatgtttcagtcttagttgaagtgtatacatc 9780516  T
Q  577 aatttt 582  Q
    ||||||    
T  9780517 aatttt 9780522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 50; E-Value: 4e-19
Query Start/End: Original strand, 408 - 583
Target Start/End: Complemental strand, 42457003 - 42456827
Alignment:
Q  408 aagaataatgttgttcacatttcactcgatgataggaaacaccagtaatttaccaa-at-atttcatcggcagttaactgcagatggattttaaccgaaa 505  Q
    ||||| ||||||||||||| ||||||  ||| |||||||||||||||||||||||| || |  ||||||| | ||| |||  ||||||||||||||||      
T  42457003 aagaagaatgttgttcacacttcacttaatgctaggaaacaccagtaatttaccaatataacctcatcggtaattagctgttgatggattttaaccgacg 42456904  T
Q  506 acagttaactgtcgatgaacatttacgtcttttttctggtttgtttcagccttagttgaagtgtatacaacaattttc 583  Q
      |||||| |||||||| ||| ||||||| |||||||| | | ||||||||||  | |||||||||||| ||||||||    
T  42456903 gtagttaattgtcgatggacaattacgtc-tttttctgatgtatttcagccttgttagaagtgtatacagcaattttc 42456827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 481 - 586
Target Start/End: Complemental strand, 38753817 - 38753713
Alignment:
Q  481 aactgcagatggattttaaccgaaaacagttaactgtcgatgaacatttacgtcttttttctggtttgtttcagccttagttgaagtgtatacaacaatt 580  Q
    |||||| |||| ||||||||| |  |||||||| | |||||| | |||||||||||||| | ||| ||||| ||||||  |||||||||| |||||||||    
T  38753817 aactgctgatgaattttaaccaatgacagttaattatcgatggatatttacgtcttttt-caggtatgttttagccttgtttgaagtgtaaacaacaatt 38753719  T
Q  581 ttcctt 586  Q
    ||||||    
T  38753718 ttcctt 38753713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 415 - 461
Target Start/End: Complemental strand, 16677184 - 16677138
Alignment:
Q  415 atgttgttcacatttcactcgatgataggaaacaccagtaatttacc 461  Q
    |||||||||||| ||||||| ||| ||||||||||||||||||||||    
T  16677184 atgttgttcacacttcactcaatgctaggaaacaccagtaatttacc 16677138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 476 - 570
Target Start/End: Original strand, 41581097 - 41581190
Alignment:
Q  476 cagttaactgcagatggattttaaccgaaaacagttaactgtcgatgaacatttacgtcttttttctggtttgtttcagccttagttgaagtgta 570  Q
    ||||||||| | |||| ||||||| | |  ||| ||||||||||||| ||||||||||| ||||||| || ||||||||||||  ||||||||||    
T  41581097 cagttaactaccgatgaattttaatctacgacacttaactgtcgatggacatttacgtc-tttttctagtgtgtttcagccttgtttgaagtgta 41581190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 469 - 554
Target Start/End: Original strand, 31645152 - 31645236
Alignment:
Q  469 tcatcggcagttaactgcagatggattttaaccgaaaacagttaactgtcgatgaacatttacgtcttttttctggtttgtttcag 554  Q
    ||||||||| |||||||| ||||||||||||||||   |||||||||| |||||  ||||||| ||  ||||||||| ||||||||    
T  31645152 tcatcggcacttaactgccgatggattttaaccgacggcagttaactgccgatggtcatttacttc-attttctggtgtgtttcag 31645236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 427 - 583
Target Start/End: Complemental strand, 5920924 - 5920767
Alignment:
Q  427 tttcactcgatgataggaaacaccagtaatttaccaa-at-atttcatcggcagttaactgcagatggattttaaccgaaaacagttaactgtcgatgaa 524  Q
    |||||||| ||| ||||||||||||||| |||||||| || || |||||||||||||||| | |||  |||||||| |  |||| ||||| | | ||  |    
T  5920924 tttcactcaatgctaggaaacaccagtactttaccaatataatctcatcggcagttaacttccgatatattttaactggcaacaattaacggccaataga 5920825  T
Q  525 catttacgtcttttttctggtttgtttcagccttagttgaagtgtatacaacaattttc 583  Q
    |||||||||  |||||||| | ||||| ||||||  | |||||||  ||||||||||||    
T  5920824 catttacgt-atttttctgctgtgttttagccttgttagaagtgtgaacaacaattttc 5920767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 42; Significance: 0.00000000000003; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 410 - 459
Target Start/End: Complemental strand, 5897717 - 5897668
Alignment:
Q  410 gaataatgttgttcacatttcactcgatgataggaaacaccagtaattta 459  Q
    ||||||||||||||||||||||||||||| || |||||||||||||||||    
T  5897717 gaataatgttgttcacatttcactcgatgctaagaaacaccagtaattta 5897668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 471 - 524
Target Start/End: Complemental strand, 21836096 - 21836043
Alignment:
Q  471 atcggcagttaactgcagatggattttaaccgaaaacagttaactgtcgatgaa 524  Q
    |||||||||||||||  ||||| ||||||||||  |||||||||||||||||||    
T  21836096 atcggcagttaactgttgatggtttttaaccgacgacagttaactgtcgatgaa 21836043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 419 - 497
Target Start/End: Complemental strand, 6687853 - 6687773
Alignment:
Q  419 tgttcacatttcactcgatgataggaaacaccagtaatttacc-aaat-atttcatcggcagttaactgcagatggatttt 497  Q
    |||||||| ||||||| ||||| ||||||||||| |||||||| | || |||||||||||| |||||||| |||| |||||    
T  6687853 tgttcacacttcactcaatgatgggaaacaccagcaatttacctatataatttcatcggcaattaactgccgatgaatttt 6687773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 468 - 582
Target Start/End: Original strand, 7682721 - 7682834
Alignment:
Q  468 ttcatcggcagttaactgcagatggattttaaccgaaaacagttaactgtcgatgaacatttacgtcttttttctggtttgtttcagccttagttgaagt 567  Q
    ||||| ||||||||||||  ||||||||||||| |  | |||||||||  | ||||| |||||  |||||||| || | ||||||||||||| | |||||    
T  7682721 ttcattggcagttaactgttgatggattttaactggcagcagttaactaccaatgaatatttaaatctttttt-tgatgtgtttcagccttattagaagt 7682819  T
Q  568 gtatacaacaatttt 582  Q
    ||| ||| |||||||    
T  7682820 gtaaacagcaatttt 7682834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 42; Significance: 0.00000000000003; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 414 - 554
Target Start/End: Original strand, 39028108 - 39028249
Alignment:
Q  414 aatgttgttcacatttcactcgatgataggaaacaccagtaatttaccaaatatttc---atcggcagttaactgcagatggattttaaccgaaaacagt 510  Q
    ||||||||||||| |||| || ||| ||| |||||| |||||||||| ||||||  |   ||||||| |||||||  |||| ||||||||||    ||||    
T  39028108 aatgttgttcacacttcaatcaatgctagaaaacactagtaatttac-aaatataaccttatcggcaattaactgtcgatgaattttaaccggcggcagt 39028206  T
Q  511 taactgtcgatgaacatttacgtcttttttctggtttgtttcag 554  Q
    |||||| ||||||||||||||||| |||||||||| ||||||||    
T  39028207 taactgccgatgaacatttacgtc-tttttctggtgtgtttcag 39028249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000003
Query Start/End: Original strand, 415 - 582
Target Start/End: Original strand, 54524927 - 54525095
Alignment:
Q  415 atgttgttcacatttcactcgatgataggaaacaccagtaatttaccaa-atatt-tcatcggcagttaactgcagatggattttaaccgaaaacagtta 512  Q
    |||||||||||| ||||||| ||| ||||||| || ||| |||||| || |||   |||||||||||||||||  |||||| ||||||||    ||||||    
T  54524927 atgttgttcacacttcactcaatgttaggaaatactagttatttactaatataacctcatcggcagttaactgttgatggaatttaaccggcggcagtta 54525026  T
Q  513 actgtcgatgaacatttacgtcttttttctggtttgtttcagccttagttgaagtgtatacaacaatttt 582  Q
    |||| | ||  |||||||||  ||||||||||| ||||||||||||  | ||||||||||||| ||||||    
T  54525027 actgccaatagacatttacga-ttttttctggtgtgtttcagccttcttagaagtgtatacaataatttt 54525095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 414 - 531
Target Start/End: Original strand, 48723335 - 48723454
Alignment:
Q  414 aatgttgttcacatttcactcgatgataggaaacaccagtaatttaccaa-atatt-tcatcggcagttaactgcagatggattttaaccgaaaacagtt 511  Q
    ||||||||||||| ||||||| ||| || |||||||  |||||||||||| ||| | |||||||||| ||||||| |||  ||||||| |||  ||||||    
T  48723335 aatgttgttcacacttcactcaatgctatgaaacactggtaatttaccaatataatctcatcggcagataactgctgatacattttaatcgacgacagtt 48723434  T
Q  512 aactgtcgatgaacatttac 531  Q
    |||||| |||| ||||||||    
T  48723435 aactgttgatggacatttac 48723454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 466 - 539
Target Start/End: Complemental strand, 27844716 - 27844643
Alignment:
Q  466 atttcatcggcagttaactgcagatggattttaaccgaaaacagttaactgtcgatgaacatttacgtcttttt 539  Q
    ||||||||||||||||||| | |||| |||||||||||   ||||||||||| |||| | |||||||| |||||    
T  27844716 atttcatcggcagttaactaccgatgaattttaaccgacggcagttaactgtagatggatatttacgtattttt 27844643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 414 - 583
Target Start/End: Original strand, 51380944 - 51381110
Alignment:
Q  414 aatgttgttcacatttcactcgatgataggaaacaccagtaatttaccaa-at-atttcatcggcagttaactgcagatggattttaaccgaaaacagtt 511  Q
    ||||||||||||| ||||||| ||| |||||||||| ||||||||| ||| || |  ||||||| ||||||| |  ||||||||||||| |    |||||    
T  51380944 aatgttgttcacacttcactcaatgctaggaaacactagtaatttatcaatataacatcatcggtagttaacagtcgatggattttaactggcggcagtt 51381043  T
Q  512 aactgtcgatgaacatttacgtcttttttctggtttgtttcagccttagttgaagtgtatacaacaattttc 583  Q
    ||||    |||  | |||||||| |||||||||| ||||||||||||  |||||||||| ||  ||||||||    
T  51381044 aact----atgggcgtttacgtc-tttttctggtgtgtttcagccttgtttgaagtgtaaacggcaattttc 51381110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 469 - 502
Target Start/End: Original strand, 29570379 - 29570412
Alignment:
Q  469 tcatcggcagttaactgcagatggattttaaccg 502  Q
    |||||||||||||||||| |||||||||||||||    
T  29570379 tcatcggcagttaactgctgatggattttaaccg 29570412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.0000000000001; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.0000000000001
Query Start/End: Original strand, 409 - 539
Target Start/End: Original strand, 21610998 - 21611130
Alignment:
Q  409 agaataatgttgttcacatttcactcgatgataggaaacaccagtaatttaccaa-atat-ttcatcggcagttaactgcagatggattttaaccgaaaa 506  Q
    |||| ||||||||||||| ||||||| ||  ||| ||| || ||||||||| ||| |||  || ||||| |||||||  | |||| |||||||||||  |    
T  21610998 agaagaatgttgttcacacttcactcaatactagaaaatactagtaatttatcaatataactttatcggtagttaacaaccgatgaattttaaccgacga 21611097  T
Q  507 cagttaactgtcgatgaacatttacgtcttttt 539  Q
    ||||||||| |||||||||||||||||||||||    
T  21611098 cagttaactatcgatgaacatttacgtcttttt 21611130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 469 - 539
Target Start/End: Original strand, 27177005 - 27177075
Alignment:
Q  469 tcatcggcagttaactgcagatggattttaaccgaaaacagttaactgtcgatgaacatttacgtcttttt 539  Q
    ||||||||||||||||   |||| ||||||| ||    |||||||||||||||||||||||||||||||||    
T  27177005 tcatcggcagttaactatcgatgaattttaatcggcggcagttaactgtcgatgaacatttacgtcttttt 27177075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 507 - 539
Target Start/End: Complemental strand, 10498177 - 10498145
Alignment:
Q  507 cagttaactgtcgatgaacatttacgtcttttt 539  Q
    |||||||||||||||||||||||||||||||||    
T  10498177 cagttaactgtcgatgaacatttacgtcttttt 10498145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 408 - 463
Target Start/End: Original strand, 33629342 - 33629397
Alignment:
Q  408 aagaataatgttgttcacatttcactcgatgataggaaacaccagtaatttaccaa 463  Q
    ||||| ||||||||||||| ||||||| ||| |||||||||  |||||||||||||    
T  33629342 aagaagaatgttgttcacacttcactcaatgctaggaaacaatagtaatttaccaa 33629397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 444 - 531
Target Start/End: Complemental strand, 33929994 - 33929905
Alignment:
Q  444 aaacaccagtaatttaccaa-atatt-tcatcggcagttaactgcagatggattttaaccgaaaacagttaactgtcgatgaacatttac 531  Q
    |||||||||||||||| ||| ||| | ||||||| |||||||||| |||||||||||||||  |  | |||||||||||||  |||||||    
T  33929994 aaacaccagtaatttatcaatatactctcatcggtagttaactgccgatggattttaaccggcagtaattaactgtcgatgggcatttac 33929905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 410 - 583
Target Start/End: Original strand, 10315695 - 10315869
Alignment:
Q  410 gaataatgttgttcacatttcactcgatgataggaaacaccagtaatttaccaa-atatt-tcatcggcagttaactgcagatggattttaaccgaaaac 507  Q
    ||||||||||||||||| ||||||| ||| |  ||||||||| |||||||| || |||   |||||||||||||||||| |||  ||||||||      |    
T  10315695 gaataatgttgttcacacttcactcaatgctgagaaacaccaataatttactaatataacctcatcggcagttaactgccgataaattttaacacgcggc 10315794  T
Q  508 agttaactgtcgatgaacatttacgtcttttttctggtttgtttcagccttagttgaagtgtatacaacaattttc 583  Q
    | ||||||| |||||  ||||||||||||||| ||| | |  |||||||||||||||||||| |||| ||||||||    
T  10315795 aattaactgccgatgggcatttacgtcttttt-ctgatataattcagccttagttgaagtgtctacagcaattttc 10315869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 409 - 459
Target Start/End: Complemental strand, 37283816 - 37283766
Alignment:
Q  409 agaataatgttgttcacatttcactcgatgataggaaacaccagtaattta 459  Q
    |||| ||||||||||||| ||||||| ||| |||||||||| |||||||||    
T  37283816 agaaaaatgttgttcacacttcactcaatgctaggaaacacgagtaattta 37283766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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