View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5360-Insertion-3 (Length: 965)

Name: NF5360-Insertion-3
Description: NF5360
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5360-Insertion-3
NF5360-Insertion-3
[»] chr2 (7 HSPs)
chr2 (8-931)||(32546249-32547163)
chr2 (202-304)||(5539049-5539153)
chr2 (222-295)||(45385838-45385912)
chr2 (234-303)||(3289487-3289558)
chr2 (210-277)||(4558698-4558763)
chr2 (223-278)||(8198419-8198473)
chr2 (223-278)||(8203179-8203233)
[»] chr5 (8 HSPs)
chr5 (202-279)||(10532385-10532464)
chr5 (191-279)||(38458813-38458899)
chr5 (174-278)||(30384213-30384316)
chr5 (191-278)||(13953290-13953375)
chr5 (202-278)||(29531876-29531951)
chr5 (185-279)||(4689295-4689389)
chr5 (193-278)||(26293503-26293587)
chr5 (223-297)||(37705135-37705210)
[»] scaffold0591 (1 HSPs)
scaffold0591 (235-302)||(3939-4008)
[»] chr4 (3 HSPs)
chr4 (203-295)||(22519827-22519921)
chr4 (240-295)||(33617953-33618010)
chr4 (721-768)||(3750041-3750088)
[»] chr7 (5 HSPs)
chr7 (223-280)||(30551985-30552041)
chr7 (223-279)||(12422047-12422102)
chr7 (239-278)||(12264738-12264777)
chr7 (226-278)||(41331369-41331420)
chr7 (223-280)||(6589596-6589652)
[»] chr1 (7 HSPs)
chr1 (223-280)||(16554302-16554358)
chr1 (202-293)||(2378112-2378205)
chr1 (168-247)||(11016755-11016833)
chr1 (199-278)||(25112662-25112742)
chr1 (230-300)||(363839-363911)
chr1 (223-278)||(18470189-18470244)
chr1 (252-295)||(49077632-49077675)
[»] chr3 (2 HSPs)
chr3 (170-252)||(29756331-29756412)
chr3 (205-278)||(51265910-51265984)
[»] chr8 (6 HSPs)
chr8 (170-278)||(15907708-15907815)
chr8 (203-279)||(27532989-27533065)
chr8 (223-299)||(2509994-2510069)
chr8 (190-279)||(12190005-12190092)
chr8 (190-279)||(12434433-12434520)
chr8 (249-278)||(45444993-45445022)
[»] scaffold0252 (1 HSPs)
scaffold0252 (202-278)||(9649-9720)
[»] chr6 (1 HSPs)
chr6 (254-302)||(7004419-7004469)


Alignment Details
Target: chr2 (Bit Score: 738; Significance: 0; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 738; E-Value: 0
Query Start/End: Original strand, 8 - 931
Target Start/End: Original strand, 32546249 - 32547163
Alignment:
Q  8 catcttgatatcaaaaacaccgattgcctcggccaaaacctccggtgaatattagactatgacattcttttttgataaccaattacgtcttttttgtggg 107  Q
    |||||||||||||||||||| |||||||||||| |||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  32546249 catcttgatatcaaaaacactgattgcctcggctaaaacctccgatgaatattagactatgacgttcttttttgataaccaattacgtcttttttgtggg 32546348  T
Q  108 gtactcatggtgtttctttgggaaaatacttaagatgtaattgtcatttgtttgctcatttattacaaaaaatagtaaaagggctaacttattgcaatta 207  Q
    ||||||||| ||||||||||||||| |||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||| |||||||||    
T  32546349 gtactcatgatgtttctttgggaaagtacttaagatgtaattatcatttgtttgctcatttgttacaaaaaatagtaaaagggctaacttgttgcaatta 32546448  T
Q  208 aataacttaaaaatgtaagtggtacgaaaaataacttaaatgaccaatttattacgattaaataacttaaaacctctggtgtaatttaacctattaaata 307  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  32546449 aataacttaaaaatgtaagtggtacgaaaaataacttaaatgatcaatttattacgattaaaaaacttaaaacctctggtgtaatttaacctattaaata 32546548  T
Q  308 tgannnnnnnnnctggtggtgtcttattttgtgcctcccttaagctcaaagtccttctctactcgtagaaataagtatacctttgtgggtcaatacctaa 407  Q
    |||         || ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  32546549 tgatttttt---ctagtggtgtcttattgtgtgcctcccttaagctcaaagtccttctctactcgtagaaataagtacacctttgtgggtcaatacctaa 32546645  T
Q  408 agagttgaattaagtttgaaaataggttcatgtgacggtgtagattttggtgattggagagttgaattaagtttgcaaaagatagcatagcgtcaaagat 507  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||| ||||||||||||||||||||||||    
T  32546646 agagttgaattaagtttgaaaataggttcatgtgacggtgtagattttggtgagcggagagttgaattaagtttgaaaaagatagcatagcgtcaaagat 32546745  T
Q  508 gggccaaaagaatgtataaatggtagagatatcatatgctcaaaactcaaaaggcagaaacacatcttcaaccttaaaccattttttatagcaattttgt 607  Q
    ||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  32546746 gggccaaaagaatgtataaatggtagagatatcatatgctca-------aaaggcagaaacacatcttcaagcttaaaccattttttatagcaattttgt 32546838  T
Q  608 tttctcatatatagttatctccaatgagaacttttttgttgcttcccttgctacccttttgcctcataaacctcatcatcaatattgtttttgtgactag 707  Q
    |||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  32546839 tttctcatatatagttatctccaatgagaacaattttgttgcttcccttgctacccttttgcctcataaacctcatcatcaatattgtttttgtgactag 32546938  T
Q  708 tcattctattggtgatcaacaatctttgttgcttcaattgaagaacaacctcacattcaactcaaccatctcnnnnnnncttgttcattggaatacaagc 807  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||| ||||    
T  32546939 tcattctattggtgatcaacaatctttgttgcttcaattgaagaacaacctcacattcaactcaaccatctcaaaaaaacttgttcattggaatataagc 32547038  T
Q  808 aaaccttgttgtgaatggaatggagtaacatgcaacaac-aaggatatgttatagctcttgacttaagtcaagaattcatcaatggacaagttccaattg 906  Q
    ||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| ||||||||||||||| || |||||||||    
T  32547039 aaaccttgttgtgaatggaatggagtaacatgcaacaacaaaggacatgttatagctcttgacttaagtcatgaattcatcaatggaaaatttccaattg 32547138  T
Q  907 agatcttccaaataccctcactaca 931  Q
    |||||||||||||||||||||||||    
T  32547139 agatcttccaaataccctcactaca 32547163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 51; E-Value: 1e-19
Query Start/End: Original strand, 202 - 304
Target Start/End: Complemental strand, 5539153 - 5539049
Alignment:
Q  202 caattaaataacttaaaaat-gtaagtggtacgaaaaataacttaaatgaccaatttattacgattaaataacttaaa--acctctggtgtaatttaacc 298  Q
    |||| ||||||||||||||  ||||||||||||||||| |||||||| |||||||||||||| |||||||| ||||||  ||||| |||||| |||||||    
T  5539153 caatcaaataacttaaaaaccgtaagtggtacgaaaaaaaacttaaaggaccaatttattacaattaaatagcttaaaggacctc-ggtgtagtttaacc 5539055  T
Q  299 tattaa 304  Q
    ||||||    
T  5539054 tattaa 5539049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 222 - 295
Target Start/End: Complemental strand, 45385912 - 45385838
Alignment:
Q  222 gtaagtggtacgaaaaataacttaaatgaccaatttattacgattaaataacttaaa--acctctggtgtaattta 295  Q
    ||||||||||||||||| |||||||| | ||||||| |||| |||||||||||||||  |||| ||||||||||||    
T  45385912 gtaagtggtacgaaaaa-aacttaaagggccaatttgttacaattaaataacttaaaggacctatggtgtaattta 45385838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 234 - 303
Target Start/End: Original strand, 3289487 - 3289558
Alignment:
Q  234 aaaaataacttaaatgaccaatttattacgattaaataacttaa--aacctctggtgtaatttaacctatta 303  Q
    ||||| |||||||| |||||||||||||| ||||||||| ||||  |||  |||||||||||||| ||||||    
T  3289487 aaaaaaaacttaaaagaccaatttattacaattaaataatttaaagaacagctggtgtaatttaatctatta 3289558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 210 - 277
Target Start/End: Complemental strand, 4558763 - 4558698
Alignment:
Q  210 taacttaaaaatgtaagtggtacgaaaaataacttaaatgaccaatttattacgattaaataacttaa 277  Q
    ||||||||  ||||||  ||||||||||| |||||||| |||||||||||||| ||||||||||||||    
T  4558763 taacttaagtatgtaaacggtacgaaaaa-aacttaaa-gaccaatttattacaattaaataacttaa 4558698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 223 - 278
Target Start/End: Complemental strand, 8198473 - 8198419
Alignment:
Q  223 taagtggtacgaaaaataacttaaatgaccaatttattacgattaaataacttaaa 278  Q
    |||||||||||||||| || |||||  ||||||||||||| |||||||||||||||    
T  8198473 taagtggtacgaaaaa-aatttaaagaaccaatttattacaattaaataacttaaa 8198419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 223 - 278
Target Start/End: Complemental strand, 8203233 - 8203179
Alignment:
Q  223 taagtggtacgaaaaataacttaaatgaccaatttattacgattaaataacttaaa 278  Q
    |||||||||||||||| || |||||  ||||||||||||| |||||||||||||||    
T  8203233 taagtggtacgaaaaa-aatttaaagaaccaatttattacaattaaataacttaaa 8203179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 44; Significance: 0.000000000000002; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 0.000000000000002
Query Start/End: Original strand, 202 - 279
Target Start/End: Original strand, 10532385 - 10532464
Alignment:
Q  202 caattaaataacttaaaa-atgtaagtggtacgaaaaataacttaaatgaccaatttatt-acgattaaataacttaaaa 279  Q
    ||||||||||||||| || ||||||||||||||||||| |||||||||||||||||| || |  ||||||||||||||||    
T  10532385 caattaaataacttataagatgtaagtggtacgaaaaaaaacttaaatgaccaatttgttaataattaaataacttaaaa 10532464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 191 - 279
Target Start/End: Original strand, 38458813 - 38458899
Alignment:
Q  191 ctaacttattgcaattaaataacttaaaa-atgtaagtggtacgaaaaataacttaaatgaccaatttattacgattaaataacttaaaa 279  Q
    |||||||||| |||| ||||||||||||| || |||||||||||||||| ||||||||  || |||||||||| ||||||||||||||||    
T  38458813 ctaacttattacaataaaataacttaaaagatataagtggtacgaaaaa-aacttaaa--actaatttattacaattaaataacttaaaa 38458899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 174 - 278
Target Start/End: Complemental strand, 30384316 - 30384213
Alignment:
Q  174 aaaaaatagtaaaagggctaacttattgcaattaaataacttaaaa-atgtaagtggtacgaaaaataacttaaatgaccaatttattacgattaaataa 272  Q
    |||||||| ||||| |  |||||| || |||||||||||||||||| | ||||||  |||||||||  ||||||| ||| ||||| |||| |||||||||    
T  30384316 aaaaaatactaaaacgattaacttgttacaattaaataacttaaaagacgtaagtaatacgaaaaa--acttaaaagacaaatttgttacaattaaataa 30384219  T
Q  273 cttaaa 278  Q
    ||||||    
T  30384218 cttaaa 30384213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 191 - 278
Target Start/End: Complemental strand, 13953375 - 13953290
Alignment:
Q  191 ctaacttattgcaattaaataacttaaaaatgtaagtggtacgaaaaataacttaaatgaccaatttattacgattaaataacttaaa 278  Q
    ||||||| || ||||||||||||||||||| ||||||| |||  |||| |||||||| ||  |||||||||  ||||||||| |||||    
T  13953375 ctaacttgttacaattaaataacttaaaaacgtaagtgatac--aaaaaaacttaaaggagtaatttattataattaaataatttaaa 13953290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 202 - 278
Target Start/End: Complemental strand, 29531951 - 29531876
Alignment:
Q  202 caattaaataacttaaaa-atgtaagtggtacgaaaaataacttaaatgaccaatttattacgattaaataacttaaa 278  Q
    |||||||||||||||||  | |||| || |||||||||  ||||||| ||| |||||||||| |||||||||||||||    
T  29531951 caattaaataacttaaatgacgtaaatgatacgaaaaa--acttaaaggactaatttattacaattaaataacttaaa 29531876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 185 - 279
Target Start/End: Original strand, 4689295 - 4689389
Alignment:
Q  185 aaagggctaacttattgcaattaaataacttaaaa--atgtaagtggtacgaaaaataacttaaatgaccaatttattacgattaaataacttaaaa 279  Q
    |||||| |||||| || ||||||||||||||||||  |  ||| |||||||||||| || ||||| |||  ||||||||| ||||||||||||||||    
T  4689295 aaagggttaacttgttacaattaaataacttaaaaggacataaatggtacgaaaaa-aatttaaa-gacgtatttattacaattaaataacttaaaa 4689389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 193 - 278
Target Start/End: Complemental strand, 26293587 - 26293503
Alignment:
Q  193 aacttattgcaattaaataacttaaaaatgtaagtggtacgaaaaataacttaaatgaccaatttattacgattaaataacttaaa 278  Q
    |||||||  |||||||||||||||||||  ||| ||||| ||||||| | ||||||||| | |||  |||||||||||||| ||||    
T  26293587 aacttataacaattaaataacttaaaaacttaaatggtatgaaaaat-agttaaatgacaactttgatacgattaaataacataaa 26293503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 223 - 297
Target Start/End: Original strand, 37705135 - 37705210
Alignment:
Q  223 taagtggtacgaaaaataacttaaatgaccaatttattacgattaaataacttaaa--acctctggtgtaatttaac 297  Q
    ||||||||||| |||| | |||||||||||||||| |||| | |||||||||||||  || | ||||||||||||||    
T  37705135 taagtggtacgtaaaa-atcttaaatgaccaatttcttacaactaaataacttaaaagacttatggtgtaatttaac 37705210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0591 (Bit Score: 43; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0591
Description:

Target: scaffold0591; HSP #1
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 235 - 302
Target Start/End: Original strand, 3939 - 4008
Alignment:
Q  235 aaaataacttaaatgaccaatttattacgattaaataacttaaa--acctctggtgtaatttaacctatt 302  Q
    |||||||||||||||| ||||||||||| |||||||||| ||||  || |||||||||||||||||||||    
T  3939 aaaataacttaaatgatcaatttattacaattaaataacataaatgacttctggtgtaatttaacctatt 4008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 39; Significance: 0.000000000001; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 203 - 295
Target Start/End: Original strand, 22519827 - 22519921
Alignment:
Q  203 aattaaataacttaaaa-atgtaagtggtacgaaaaataacttaaatgaccaatttattacgattaaataacttaaa-acctctggtgtaattta 295  Q
    |||||| |||||||||| |  ||||||||||| |||| ||||| || ||||||||| |||| ||||||||| ||||| |||||||||||||||||    
T  22519827 aattaattaacttaaaagacctaagtggtacggaaaaaaactttaaggaccaatttgttacaattaaataatttaaagacctctggtgtaattta 22519921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 240 - 295
Target Start/End: Original strand, 33617953 - 33618010
Alignment:
Q  240 aacttaaatgaccaatttattacgattaaataacttaaa--acctctggtgtaattta 295  Q
    |||||||| |||||||||||||| |||||||||||||||  |||||| ||||||||||    
T  33617953 aacttaaaggaccaatttattacaattaaataacttaaatgacctcttgtgtaattta 33618010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 721 - 768
Target Start/End: Complemental strand, 3750088 - 3750041
Alignment:
Q  721 gatcaacaatctttgttgcttcaattgaagaacaacctcacattcaac 768  Q
    ||||||||||| |||||||||||||| || ||||| ||||||||||||    
T  3750088 gatcaacaatcattgttgcttcaattaaaaaacaatctcacattcaac 3750041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000006; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 223 - 280
Target Start/End: Original strand, 30551985 - 30552041
Alignment:
Q  223 taagtggtacgaaaaataacttaaatgaccaatttattacgattaaataacttaaaac 280  Q
    |||||||||| ||||| |||||||| |||||||||||||| |||||||||||||||||    
T  30551985 taagtggtaccaaaaa-aacttaaaggaccaatttattacaattaaataacttaaaac 30552041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 223 - 279
Target Start/End: Complemental strand, 12422102 - 12422047
Alignment:
Q  223 taagtggtacgaaaaataacttaaatgaccaatttattacgattaaataacttaaaa 279  Q
    ||||||||| |||||| ||||||||||||||||||||||| ||| ||||||||||||    
T  12422102 taagtggtatgaaaaa-aacttaaatgaccaatttattacaatttaataacttaaaa 12422047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 239 - 278
Target Start/End: Complemental strand, 12264777 - 12264738
Alignment:
Q  239 taacttaaatgaccaatttattacgattaaataacttaaa 278  Q
    |||||||||||||||||||||||| |||||||||||||||    
T  12264777 taacttaaatgaccaatttattacaattaaataacttaaa 12264738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 226 - 278
Target Start/End: Original strand, 41331369 - 41331420
Alignment:
Q  226 gtggtacgaaaaataacttaaatgaccaatttattacgattaaataacttaaa 278  Q
    ||||||||| ||| ||||||||||| ||||||||||| |||||||||||||||    
T  41331369 gtggtacgagaaa-aacttaaatgatcaatttattacaattaaataacttaaa 41331420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 223 - 280
Target Start/End: Original strand, 6589596 - 6589652
Alignment:
Q  223 taagtggtacgaaaaataacttaaatgaccaatttattacgattaaataacttaaaac 280  Q
    |||||||||| ||||| |||||||| || ||||||||||| ||||||| |||||||||    
T  6589596 taagtggtaccaaaaa-aacttaaaggatcaatttattacaattaaattacttaaaac 6589652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000006; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 223 - 280
Target Start/End: Complemental strand, 16554358 - 16554302
Alignment:
Q  223 taagtggtacgaaaaataacttaaatgaccaatttattacgattaaataacttaaaac 280  Q
    |||||||||| ||||| |||||||| |||||||||||||| |||||||||||||||||    
T  16554358 taagtggtaccaaaaa-aacttaaaggaccaatttattacaattaaataacttaaaac 16554302  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 202 - 293
Target Start/End: Complemental strand, 2378205 - 2378112
Alignment:
Q  202 caattaaataacttaaaa-atgtaagtggtacgaaaaataacttaaatgaccaatttattacgattaaataacttaaa--acctctggtgtaatt 293  Q
    ||||||||||| |||||| || |||||||| ||||||| |||||||| ||||||||| |||  |||||||||||||||  | |||||||||||||    
T  2378205 caattaaataatttaaaagatataagtggtgcgaaaaaaaacttaaa-gaccaatttgttataattaaataacttaaaggatctctggtgtaatt 2378112  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000009
Query Start/End: Original strand, 168 - 247
Target Start/End: Complemental strand, 11016833 - 11016755
Alignment:
Q  168 tattacaaaaaatagtaaaagggctaacttattgcaattaaataacttaaaaatgtaagtggtacgaaaaataacttaaa 247  Q
    ||||||||||||||   ||| | |||| || |||||||||||||||||||| | ||||||||||||||||| ||||||||    
T  11016833 tattacaaaaaatacctaaaagactaatttgttgcaattaaataacttaaagacgtaagtggtacgaaaaa-aacttaaa 11016755  T

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Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 199 - 278
Target Start/End: Original strand, 25112662 - 25112742
Alignment:
Q  199 ttgcaattaaataacttaaaa--atgtaagtggtacgaaaaataacttaaatgaccaatttattacgattaaataacttaaa 278  Q
    ||||||||||||||||| |||  | ||||||||||  |||||||| ||||| ||| |||||||||| |||||||||||||||    
T  25112662 ttgcaattaaataactttaaagaacgtaagtggtaaaaaaaataa-ttaaaagactaatttattacaattaaataacttaaa 25112742  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 230 - 300
Target Start/End: Original strand, 363839 - 363911
Alignment:
Q  230 tacgaaaaataacttaaatgaccaatttattacgattaaataacttaa---aacctctggtgtaatttaaccta 300  Q
    ||||||||||| |||||||||| ||||| |||| ||||||||||||||   ||| |||||||||||||| ||||    
T  363839 tacgaaaaata-cttaaatgacaaatttcttacaattaaataacttaaaagaacatctggtgtaatttagccta 363911  T

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Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 223 - 278
Target Start/End: Complemental strand, 18470244 - 18470189
Alignment:
Q  223 taagtggtacgaaaaataacttaaatgaccaatttattacgattaaataacttaaa 278  Q
    |||| ||||||||||| ||| ||||||| ||| ||||||| |||||||||||||||    
T  18470244 taagaggtacgaaaaaaaacgtaaatgatcaacttattacaattaaataacttaaa 18470189  T

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Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 252 - 295
Target Start/End: Complemental strand, 49077675 - 49077632
Alignment:
Q  252 caatttattacgattaaataacttaaaacctctggtgtaattta 295  Q
    ||||||| ||||||||||||||||||||  ||||||||||||||    
T  49077675 caatttactacgattaaataacttaaaatttctggtgtaattta 49077632  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 170 - 252
Target Start/End: Original strand, 29756331 - 29756412
Alignment:
Q  170 ttacaaaaaatagtaaaagggctaacttattgcaattaaataacttaaaaatgtaagtggtacgaaaaataacttaaatgacc 252  Q
    |||||||||||  ||||||  ||||||| ||||||||||||||||||||   |||| |||||||||||| |||||||| ||||    
T  29756331 ttacaaaaaatcctaaaagtactaacttgttgcaattaaataacttaaatgcgtaaatggtacgaaaaa-aacttaaaggacc 29756412  T

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Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 205 - 278
Target Start/End: Original strand, 51265910 - 51265984
Alignment:
Q  205 ttaaataacttaaaa-atgtaagtggtacgaaaaataacttaaatgaccaatttattacgattaaataacttaaa 278  Q
    ||||||||||||||  || |||| ||||||||||| ||| ||||||| ||| ||||||| |||||||||||||||    
T  51265910 ttaaataacttaaaggatctaagaggtacgaaaaaaaacgtaaatgatcaacttattacaattaaataacttaaa 51265984  T

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Target: chr8 (Bit Score: 34; Significance: 0.000000001; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 170 - 278
Target Start/End: Complemental strand, 15907815 - 15907708
Alignment:
Q  170 ttacaaaaaatagtaaaagggctaacttattgcaattaaataacttaaa-aatgtaagtggtacgaaaaataacttaaatgaccaatttattacgattaa 268  Q
    |||||||||||| | ||||  ||| ||| ||  |||||| ||||||||| ||| |||||||||||||||| |||||||| ||||||||||| || | |||    
T  15907815 ttacaaaaaatatttaaagaactagcttgttataattaattaacttaaagaatataagtggtacgaaaaa-aacttaaa-gaccaatttatcacaagtaa 15907718  T
Q  269 ataacttaaa 278  Q
    ||||||||||    
T  15907717 ataacttaaa 15907708  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 203 - 279
Target Start/End: Complemental strand, 27533065 - 27532989
Alignment:
Q  203 aattaaataacttaaaa-atgtaagtggtacgaaaaataacttaaatgaccaatttattacgattaaataacttaaaa 279  Q
    ||||||||||||||||  | |||||||||||  |||| |||||||| || ||||||||||| ||||||||||||||||    
T  27533065 aattaaataacttaaaggacgtaagtggtacataaaa-aacttaaaagatcaatttattacaattaaataacttaaaa 27532989  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 223 - 299
Target Start/End: Complemental strand, 2510069 - 2509994
Alignment:
Q  223 taagtggtacgaaaaataacttaaatgaccaatttattacgattaaataactt-aaaacctctggtgtaatttaacct 299  Q
    ||||||||| |||||| ||| ||||  ||||||||||||| |||||||||||| |||||||| |  ||||||||||||    
T  2510069 taagtggtatgaaaaaaaacataaa--accaatttattacaattaaataacttaaaaacctccgaagtaatttaacct 2509994  T

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Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 190 - 279
Target Start/End: Original strand, 12190005 - 12190092
Alignment:
Q  190 gctaacttattgcaattaaataacttaaaaatgtaagtggtacgaaaaataacttaaatgaccaatttattacgattaaataacttaaaa 279  Q
    |||| |||||| |||| || ||||||||| || |||| | ||||||||| ||||||||  || ||||| |||| ||||||||||||||||    
T  12190005 gctaccttattacaatcaattaacttaaagatctaagcgatacgaaaaaaaacttaaa--acaaatttgttacaattaaataacttaaaa 12190092  T

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Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 190 - 279
Target Start/End: Original strand, 12434433 - 12434520
Alignment:
Q  190 gctaacttattgcaattaaataacttaaaaatgtaagtggtacgaaaaataacttaaatgaccaatttattacgattaaataacttaaaa 279  Q
    |||| |||||| |||| || ||||||||| || |||| | ||||||||| ||||||||  || ||||| |||| ||||||||||||||||    
T  12434433 gctaccttattacaatcaattaacttaaagatctaagcgatacgaaaaaaaacttaaa--acaaatttgttacaattaaataacttaaaa 12434520  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 249 - 278
Target Start/End: Complemental strand, 45445022 - 45444993
Alignment:
Q  249 gaccaatttattacgattaaataacttaaa 278  Q
    ||||||||||||||||||||||||||||||    
T  45445022 gaccaatttattacgattaaataacttaaa 45444993  T

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Target: scaffold0252 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0252
Description:

Target: scaffold0252; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 202 - 278
Target Start/End: Complemental strand, 9720 - 9649
Alignment:
Q  202 caattaaataacttaaaaatgtaagtggtacgaaaaataacttaaatgaccaatttattacgattaaataacttaaa 278  Q
    |||||||||||||||||||| |||||||||| |||||| ||||||||    || ||||||| ||||| |||||||||    
T  9720 caattaaataacttaaaaatctaagtggtacaaaaaat-acttaaat----aacttattacaattaattaacttaaa 9649  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 254 - 302
Target Start/End: Original strand, 7004419 - 7004469
Alignment:
Q  254 atttattacgattaaataacttaa--aacctctggtgtaatttaacctatt 302  Q
    ||||||||| ||||||||||||||  ||| |||||||||||||||||||||    
T  7004419 atttattacaattaaataacttaaagaacttctggtgtaatttaacctatt 7004469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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