View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5360-Insertion-4 (Length: 820)
Name: NF5360-Insertion-4
Description: NF5360
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5360-Insertion-4 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 798; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 798; E-Value: 0
Query Start/End: Original strand, 7 - 820
Target Start/End: Original strand, 39467773 - 39468586
Alignment:
| Q |
7 |
atgtaaaaagatctacgcgggtgtctaatcacatcttaccattatgccatttcaaacagtttgttattctactagataaaacatcaccataaatatgtgc |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
39467773 |
atgtaaaaagatctacgcgggtgtctaatcacatcttaccattatgccatttcaaacagtttgttattctactatataaaacatcaccataaatatgtgc |
39467872 |
T |
|
| Q |
107 |
acagtctgatgtgattagacgcgagcgcaaaagtttttgtactatatcagtgtatattcattaaactctggtttagctttaatcacagataaaataagat |
206 |
Q |
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| T |
39467873 |
acagtctgatgtgattagacgcgagcgcaaaagtttttgtacaatatcagtgtatattcattaaactctggtttagctttaatcacagataaaataagat |
39467972 |
T |
|
| Q |
207 |
ttggaaatagtaacttaccaggagcgatgtagccataggatccggcaaccatggatactgtttcgttcttctggatcatcatcttggctaacccgaaatc |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39467973 |
ttggaaatagtaacttaccaggagcgatgtagccataggatccggcaaccatggatactgtttcgttcttctggatcatcatcttggctaacccgaaatc |
39468072 |
T |
|
| Q |
307 |
tgctatccttgcctcaagatttgcatcaagcagtatattatttgacttgatgtcgtgatgaataaccggcggatgacagtcatggtgaagataagcaagt |
406 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39468073 |
tgctatccttgcctcaagatttgcatcaagcagtatattatttgacttgatgtcgcgatgaataaccggcggatgacagtcatggtgaagataagcaagt |
39468172 |
T |
|
| Q |
407 |
ccctgagcaactcctagagctatgttatatcttgaaacccaatccacaagatgcctaactgcttgcctaccatgcaaggcatctccaagattaccattgt |
506 |
Q |
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| T |
39468173 |
ccctgagcaactcctagagctatgttatatcttgaaacccaatccacaagatgcctaactgattgcctaccatgcaaggcatctccaagattaccattgt |
39468272 |
T |
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| Q |
507 |
tcataaactcataaactatcatcaaatcggtgtcattatgaagaaatcctaataatctaacaatgttcctatgccttagtctccctaaaagattcacctc |
606 |
Q |
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| T |
39468273 |
tcataaactcataaactatcatcaaatcggtgtcattatgaagaaatcctaataatctaacaatgttcctatgccttagtctccctaaaagattcacctc |
39468372 |
T |
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| Q |
607 |
tccaacaagctcatcacttcctcttcctacttcaacatcatttcctgatctccacaactttttcactgccacaactgtgttagaatgaggtacctcggcc |
706 |
Q |
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| T |
39468373 |
tccaacaagctcatcacttcctcttcctacttcaacatcatttcctgatctccacaactttttcactgccacaactgtgttagaatgaggtacctcggcc |
39468472 |
T |
|
| Q |
707 |
ttgtaaacaatgccggtgcctcccattccaatcacatttgtttctttgatacaagccagaatgtcagtacttgtaaagccaagtctctgaaatgccatca |
806 |
Q |
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| T |
39468473 |
ttgtaaacaatgccggtgcctcccattccaatcacatttgtttctttgatacaagccagaatgtcagtacttgtaaagccaagtctctgaaatgccatca |
39468572 |
T |
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| Q |
807 |
atctccatggccac |
820 |
Q |
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| T |
39468573 |
atctccatggccac |
39468586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 235; Significance: 1e-129; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 235; E-Value: 1e-129
Query Start/End: Original strand, 215 - 819
Target Start/End: Complemental strand, 30089967 - 30089366
Alignment:
| Q |
215 |
agtaacttaccaggagcgatgtagccataggatccggcaaccatggatactgtttcgttcttctggatcatcatcttggctaacccgaaatctgctatcc |
314 |
Q |
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||||||| |||||| || ||||| |||||||||||||||| |||||| |||||||| |||||| | | ||||||||||||||| |||||||||||||||| |
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| T |
30089967 |
agtaactcaccaggggcaatgtatccataggatccggcaatcatggagactgtttcattcttccgaaccatcatcttggctaatccgaaatctgctatcc |
30089868 |
T |
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| Q |
315 |
ttgcctcaagatttgcatcaagcagtatattatttgacttgatgtcgtgatgaataaccggcggatgacagtcatggtgaagataagcaagtccctgagc |
414 |
Q |
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| T |
30089867 |
ttgcctcaagatttgcgtcaagaagtatattattcgacttgatatctcgatggataacaggtggatgacagtcatgatgaagataagcgagtccttgtgc |
30089768 |
T |
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| Q |
415 |
aactcctagagctatgttatatcttgaaacccaatccacaagatgcctaactgcttgcctaccatgcaaggcatctccaagattaccattgttcataaac |
514 |
Q |
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| T |
30089767 |
gattcctagagctatgttataccgcgaaacccagtctacaagcaatctctctgattgtttaccatgcatggcatctccaaggtttccattgaccataaat |
30089668 |
T |
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| Q |
515 |
tcataaactatcatcaaatcggtgtcattatgaagaaatcctaataatctaacaatgttcctatgccttagtctccctaaaagattcacctctccaacaa |
614 |
Q |
| |
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|||||||||||||||| ||| |||||||||| |||||| |||| || |||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
30089667 |
tcataaactatcatcacatcagtgtcattataaagaaaccctagtagtctaacaatgttcctatgccttagcctccctaaaagattcacctctccaacaa |
30089568 |
T |
|
| Q |
615 |
gctcatcacttcctcttcctacttcaacatcatttcctgatctccacaactttttcactgccacaactgtgttagaatgaggtacctcggccttgtaaac |
714 |
Q |
| |
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| |||||| || ||||||||||| | |||| | ||| |||||| || ||||| |||||||||||||| | || || | || ||| ||||| ||||| |
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| T |
30089567 |
gatcatca---ccacttcctacttcgatatcagattctgttctccataattttttgactgccacaactgtacttgattgcgctatctcagccttataaac |
30089471 |
T |
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| Q |
715 |
aatgccggtgcctcccattccaatcacatttgtttctttgatacaagccagaatgtcagtacttgtaaagccaagtctctgaaatgccatcaatctccat |
814 |
Q |
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|| |||||| |||||||| || |||||||||||||| ||||| || | | || |||||||||||||| | |||||||||||||||||||||||||| |
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| T |
30089470 |
aacgccggtccctcccatgcctatcacatttgtttccttgatgcaggataagatatcagtacttgtaaaatcgagtctctgaaatgccatcaatctccaa |
30089371 |
T |
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| Q |
815 |
ggcca |
819 |
Q |
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| T |
30089370 |
ggcca |
30089366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 272 - 456
Target Start/End: Original strand, 35781311 - 35781495
Alignment:
| Q |
272 |
ttcttctggatcatcatcttggctaacccgaaatctgctatccttgcctcaagatttgcatcaagcagtatattatttgacttgatgtcgtgatgaataa |
371 |
Q |
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||||| || ||||||||| | || || ||||||||||||||||||||||| | |||||| ||||| ||||| ||||| |||||||| || ||||||| |
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| T |
35781311 |
ttcttttgaatcatcatcctcgccaaaccgaaatctgctatccttgcctccaaatttgcgtcaaggagtatgttattagacttgatatccctgtgaataa |
35781410 |
T |
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| Q |
372 |
ccggcggatgacagtcatggtgaagataagcaagtccctgagcaactcctagagctatgttatatcttgaaacccaatccacaag |
456 |
Q |
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| T |
35781411 |
ctggtggatgacaatcatggtgtaggtagttcatcccttgtgcaactccaagagctatgttataccttgagacccaatctacaag |
35781495 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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