View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5360-Insertion-6 (Length: 502)
Name: NF5360-Insertion-6
Description: NF5360
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5360-Insertion-6 |
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Alignment Details
Target: chr4 (Bit Score: 274; Significance: 1e-153; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 197 - 486
Target Start/End: Original strand, 45545540 - 45545829
Alignment:
| Q |
197 |
cagggtactcagattcaagcaactatgtttaatgatgctgcagggaagttttatgacaaatttgctatgggagaggtgtattacatttcaaagggatctt |
296 |
Q |
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| T |
45545540 |
cagggtactcagattcaagcaactatgtttaatgatgctgcaaggaagttttatgacaaatttgctatgggaaaggtgtattacatttcaaagggatctt |
45545639 |
T |
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| Q |
297 |
tgaaagttgctaacaaaaatttcaaaactgtggcaaacgattatgaaatgacattgaatgagaattctgaggtggaagaggttgccaatgaagctgcttt |
396 |
Q |
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| T |
45545640 |
tgaaagttgctaacaaaaatttcaaaactgtggtaaacgattatgaaatgacattgaatgagaattctgaggtggaagaggttgccaatgaagctgcttt |
45545739 |
T |
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| Q |
397 |
tgttccagagactaaattcaattttgtcccaattgatcagttgggtccttacgtgaataagtctgagcttgttggtgagtgtttgttaga |
486 |
Q |
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| T |
45545740 |
tgttccagagactaaattcaattttgtcccaattgatcagttgggtccttatgtgaataagtctgagcttgttggtgagtgtttgttaga |
45545829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 108; E-Value: 5e-54
Query Start/End: Original strand, 7 - 122
Target Start/End: Original strand, 45545342 - 45545457
Alignment:
| Q |
7 |
attaaggtcagtgtcacaagcaaaggaactatgcgtacctataagaatgctagaggagaaggttgtgtattcaatgttgaactgaccgatgaagatgtaa |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
45545342 |
attaaggtcagtgtcacaagcaaaggaactatgcgtacctataagaatgctagaggagaaggttgtgtattcaatgttgaactgactgatgaagatgtaa |
45545441 |
T |
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| Q |
107 |
ggaacaggatatttga |
122 |
Q |
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| T |
45545442 |
ggaacagaatatttga |
45545457 |
T |
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