View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5360_high_2 (Length: 431)

Name: NF5360_high_2
Description: NF5360
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5360_high_2
NF5360_high_2
[»] chr5 (1 HSPs)
chr5 (18-420)||(2361039-2361429)
[»] chr8 (1 HSPs)
chr8 (298-360)||(41747936-41747998)
[»] chr4 (3 HSPs)
chr4 (307-347)||(33720985-33721025)
chr4 (307-360)||(33735626-33735679)
chr4 (307-347)||(33718966-33719006)
[»] chr3 (2 HSPs)
chr3 (301-356)||(43490153-43490208)
chr3 (199-272)||(41197538-41197611)


Alignment Details
Target: chr5 (Bit Score: 354; Significance: 0; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 354; E-Value: 0
Query Start/End: Original strand, 18 - 420
Target Start/End: Original strand, 2361039 - 2361429
Alignment:
Q  18 tgaagtaggagaaaataaactcttattattattgttttgagattgtgattgagattgagattcttcaccggagtttgccggtaacggtaatgacggaaga 117  Q
    ||||||||||||||||||||||||||||||||||||||||            ||||||||||||||||||||||||||||||||||||||||||| ||||    
T  2361039 tgaagtaggagaaaataaactcttattattattgttttga------------gattgagattcttcaccggagtttgccggtaacggtaatgacgaaaga 2361126  T
Q  118 ggaatttcattttccggtggtggtgatgataactgacacgtggcagctgcacttacaggtggagttatgaaattagttagcgcgtctggtccacgcaact 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2361127 ggaatttcattttccggtggtggtgatgataactgacacgtggcagctgcacttacaggtggagttatgaaattagttagcgcgtctggtccacgcaact 2361226  T
Q  218 taatagccgcgttgtcgtacacaatagcagcttcttcagccgtttgaaatgtaccaagccacacacgcactccacgcgccgggtctcttatctccgccgc 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2361227 taatagccgcgttgtcgtacacaatagcagcttcttcagccgtttgaaatgtaccaagccacacacgcactccacgcgccgggtctcttatctccgccgc 2361326  T
Q  318 ccattttccccatggtctctgcctcactccacggtatttcttcgccggaatactcaccggagctcttgtttttcttcctccggtggttctgtttctgttt 417  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  2361327 ccattttccccatggtctctgcctcactccacggtatttcttcgccggaatactaaccggagctcttgtttttcttcctccggtggttctgtttctgttt 2361426  T

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Target: chr8 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 298 - 360
Target Start/End: Complemental strand, 41747998 - 41747936
Alignment:
Q  298 gggtctcttatctccgccgcccattttccccatggtctctgcctcactccacggtatttcttc 360  Q
    |||||||||||||||||||||||||||||||| |||||||| ||||||||||| |||||||||    
T  41747998 gggtctcttatctccgccgcccattttccccaaggtctctgtctcactccacgatatttcttc 41747936  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 307 - 347
Target Start/End: Complemental strand, 33721025 - 33720985
Alignment:
Q  307 atctccgccgcccattttccccatggtctctgcctcactcc 347  Q
    ||||| || ||||||||||||||||||||||||||||||||    
T  33721025 atctcagcagcccattttccccatggtctctgcctcactcc 33720985  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 307 - 360
Target Start/End: Complemental strand, 33735679 - 33735626
Alignment:
Q  307 atctccgccgcccattttccccatggtctctgcctcactccacggtatttcttc 360  Q
    ||||| || ||||||||||||||||| |||||||||||||| | ||| ||||||    
T  33735679 atctcagcagcccattttccccatggcctctgcctcactcctctgtacttcttc 33735626  T

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Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 307 - 347
Target Start/End: Complemental strand, 33719006 - 33718966
Alignment:
Q  307 atctccgccgcccattttccccatggtctctgcctcactcc 347  Q
    ||||| || ||||||||||||||||||||||| ||||||||    
T  33719006 atctcagcagcccattttccccatggtctctgtctcactcc 33718966  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 301 - 356
Target Start/End: Original strand, 43490153 - 43490208
Alignment:
Q  301 tctcttatctccgccgcccattttccccatggtctctgcctcactccacggtattt 356  Q
    ||||||||||| || ||||||||||||||||||||||| || ||||| | ||||||    
T  43490153 tctcttatctctgctgcccattttccccatggtctctgtcttactcctctgtattt 43490208  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 199 - 272
Target Start/End: Complemental strand, 41197611 - 41197538
Alignment:
Q  199 gcgtctggtccacgcaacttaatagccgcgttgtcgtacacaatagcagcttcttcagccgtttgaaatgtacc 272  Q
    |||||||||||||| | ||||||||| || ||||| || || |||||||||||||| || |||| ||| |||||    
T  41197611 gcgtctggtccacgaagcttaatagcggcattgtcataaaccatagcagcttcttctgcagtttcaaaagtacc 41197538  T

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