View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5360_low_1 (Length: 707)

Name: NF5360_low_1
Description: NF5360
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5360_low_1
NF5360_low_1
[»] chr7 (15 HSPs)
chr7 (246-512)||(23026375-23026641)
chr7 (253-494)||(23035197-23035438)
chr7 (18-182)||(23026705-23026866)
chr7 (578-698)||(23026189-23026309)
chr7 (578-698)||(23034997-23035117)
chr7 (74-182)||(23037102-23037210)
chr7 (297-482)||(23057732-23057917)
chr7 (327-435)||(23091940-23092048)
chr7 (330-435)||(23081042-23081147)
chr7 (77-173)||(23092535-23092631)
chr7 (92-171)||(23058069-23058148)
chr7 (95-173)||(23081345-23081423)
chr7 (330-387)||(23069175-23069232)
chr7 (587-670)||(23091379-23091462)
chr7 (582-636)||(23056656-23056710)
[»] chr3 (2 HSPs)
chr3 (305-383)||(30790306-30790384)
chr3 (308-385)||(30706202-30706279)


Alignment Details
Target: chr7 (Bit Score: 247; Significance: 1e-137; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 247; E-Value: 1e-137
Query Start/End: Original strand, 246 - 512
Target Start/End: Complemental strand, 23026641 - 23026375
Alignment:
Q  246 agaggaagaaacatacctttggtggctgcataaacagataaaacaggaatagcttttaaacctgcaacggaagaagtgaacactatgcttccataaccag 345  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  23026641 agaggaagaaacatacctttggtggctgcataaacagataaaacaggaatagcttttaaacctgcaacggaagaagtgaacactatgcttccatatccag 23026542  T
Q  346 attcttttagaagaggatgtgcaagttgacacaaatggtaaccagacacaaaatttgtacccaatgtagtgtttatatcttcatcagtattatatattat 445  Q
    ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  23026541 attgttttagaagaggatgtgcaagttgacacaaatggtaaccagacacaaaatttgtacccaatgtagtgtttatatcttcatcagtattatctattat 23026442  T
Q  446 tttcttactggtaggttttgcagcattgtttacctaaaaggtaacattaattacattatattttgtc 512  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||    
T  23026441 tttcttactggtaggttttgcagcattgtttacctaaaaggtaacattatatacattatattttgtc 23026375  T

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Target: chr7; HSP #2
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 253 - 494
Target Start/End: Complemental strand, 23035438 - 23035197
Alignment:
Q  253 gaaacatacctttggtggctgcataaacagataaaacaggaatagcttttaaacctgcaacggaagaagtgaacactatgcttccataaccagattcttt 352  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||    
T  23035438 gaaacatacctttggtggctgcataaacagataaaacaggaatagcttttaaacctgcaacggaagaagtgaacactatgcttccatatccagattgttt 23035339  T
Q  353 tagaagaggatgtgcaagttgacacaaatggtaaccagacacaaaatttgtacccaatgtagtgtttatatcttcatcagtattatatattattttctta 452  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  23035338 tagaagaggatgtgcaagttgacacaaatggtaaccagacacaaaatttgtacccaatgtagtgtttatatcttcatcagtattatctattattttctta 23035239  T
Q  453 ctggtaggttttgcagcattgtttacctaaaaggtaacatta 494  Q
    || |||||||||||||||||||||||||||||||||||||||    
T  23035238 cttgtaggttttgcagcattgtttacctaaaaggtaacatta 23035197  T

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Target: chr7; HSP #3
Raw Score: 146; E-Value: 2e-76
Query Start/End: Original strand, 18 - 182
Target Start/End: Complemental strand, 23026866 - 23026705
Alignment:
Q  18 ggaactacccctatagtcctatataaatattacatgaacaaatgcataccatgactgattccaaaagtgatgtcttaacaggtccaggtgccacagcatt 117  Q
    |||||||||||||  ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23026866 ggaactaccccta--gtcctatataaatat-acatgaacaaatgcataccatgactgattccaaaagtgatgtcttaacaggtccaggtgccacagcatt 23026770  T
Q  118 tgcacgaatattatcctttgcccattctaatgccaagttctttgtgaattgattcaccgctcctg 182  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23026769 tgcacgaatattatcctttgcccattctaatgccaagttctttgtgaattgattcaccgctcctg 23026705  T

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Target: chr7; HSP #4
Raw Score: 113; E-Value: 7e-57
Query Start/End: Original strand, 578 - 698
Target Start/End: Complemental strand, 23026309 - 23026189
Alignment:
Q  578 aatggatcgtactagaatattgagctttccttgaaagatagaagaaacagtttccattaatctcttgcgttgttcatgaaatagtatatcacatactgat 677  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||    
T  23026309 aatggatcgtactagaatattgagctttccttgaaagatagaagaaacagtttccattagtttcttgcgttgttcatgaaatagtatatcacatactgat 23026210  T
Q  678 cctgttacattaaaccctttg 698  Q
    |||||||||||||||||||||    
T  23026209 cctgttacattaaaccctttg 23026189  T

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Target: chr7; HSP #5
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 578 - 698
Target Start/End: Complemental strand, 23035117 - 23034997
Alignment:
Q  578 aatggatcgtactagaatattgagctttccttgaaagatagaagaaacagtttccattaatctcttgcgttgttcatgaaatagtatatcacatactgat 677  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||    
T  23035117 aatggatcgtactagaatattgagctttccatgaaagatagaagaaacagtttccattaatcttttgcgttgttcatgaaataatatatcacatactgat 23035018  T
Q  678 cctgttacattaaaccctttg 698  Q
    |||||||||||||||||||||    
T  23035017 cctgttacattaaaccctttg 23034997  T

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Target: chr7; HSP #6
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 74 - 182
Target Start/End: Complemental strand, 23037210 - 23037102
Alignment:
Q  74 gattccaaaagtgatgtcttaacaggtccaggtgccacagcatttgcacgaatattatcctttgcccattctaatgccaagttctttgtgaattgattca 173  Q
    |||| ||| ||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| |||||||||||||    
T  23037210 gattgcaagagtgatgtcttgacaggtccaggtgccacagcatttgcacgaatattatcttttgcccattccaatgccaagttcttcgtgaattgattca 23037111  T
Q  174 ccgctcctg 182  Q
    | |||||||    
T  23037110 cagctcctg 23037102  T

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Target: chr7; HSP #7
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 297 - 482
Target Start/End: Complemental strand, 23057917 - 23057732
Alignment:
Q  297 gcttttaaacctgcaacggaagaagtgaacactatgcttccataaccagattcttttagaagaggatgtgcaagttgacacaaatggtaaccagacacaa 396  Q
    |||||||||||| |||| |||||  ||||||||||||||||||| ||||||||||||||||| || | ||| |||||||| | ||||||||||||| |||    
T  23057917 gcttttaaacctccaacagaagatatgaacactatgcttccatatccagattcttttagaagtgggtatgctagttgacaaagatggtaaccagactcaa 23057818  T
Q  397 aatttgtacccaatgtagtgtttatatcttcatcagtattatatattattttcttactggtaggttttgcagcattgtttacctaa 482  Q
    |||||||||||| ||||||   |||||||||| ||||||  | || ||||||||||   |||  | | ||||||||||||||||||    
T  23057817 aatttgtacccattgtagttactatatcttcagcagtatactctagtattttcttatgtgtacatgtggcagcattgtttacctaa 23057732  T

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Target: chr7; HSP #8
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 327 - 435
Target Start/End: Complemental strand, 23092048 - 23091940
Alignment:
Q  327 actatgcttccataaccagattcttttagaagaggatgtgcaagttgacacaaatggtaaccagacacaaaatttgtacccaatgtagtgtttatatctt 426  Q
    |||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| | |||||    ||||||||    
T  23092048 actatgcttccatatccagattgttttagaagaggatgtgcaagttgacacaaatggtaactagacacaaaattggtaccaattgtagatgctatatctt 23091949  T
Q  427 catcagtat 435  Q
    |||||||||    
T  23091948 catcagtat 23091940  T

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Target: chr7; HSP #9
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 330 - 435
Target Start/End: Complemental strand, 23081147 - 23081042
Alignment:
Q  330 atgcttccataaccagattcttttagaagaggatgtgcaagttgacacaaatggtaaccagacacaaaatttgtacccaatgtagtgtttatatcttcat 429  Q
    ||||||||||  ||||||| |||||||||||| |||||||||||||||||||| ||||||||||||||||| ||||| | ||||||  ||||||||||||    
T  23081147 atgcttccatttccagattgttttagaagagggtgtgcaagttgacacaaatgataaccagacacaaaattggtaccaattgtagttgttatatcttcat 23081048  T
Q  430 cagtat 435  Q
    ||||||    
T  23081047 cagtat 23081042  T

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Target: chr7; HSP #10
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 77 - 173
Target Start/End: Complemental strand, 23092631 - 23092535
Alignment:
Q  77 tccaaaagtgatgtcttaacaggtccaggtgccacagcatttgcacgaatattatcctttgcccattctaatgccaagttctttgtgaattgattca 173  Q
    ||||||||| | ||| | |||||||||||||||||| |||| |||||||||||||||||||||||||| ||||| |||||||| ||  |||||||||    
T  23092631 tccaaaagtaaggtcatcacaggtccaggtgccacaacattagcacgaatattatcctttgcccattccaatgctaagttcttggtacattgattca 23092535  T

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Target: chr7; HSP #11
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 92 - 171
Target Start/End: Complemental strand, 23058148 - 23058069
Alignment:
Q  92 ttaacaggtccaggtgccacagcatttgcacgaatattatcctttgcccattctaatgccaagttctttgtgaattgatt 171  Q
    ||||||||||||||||||||| ||||||| ||||||||||||||||||||||| ||||| | ||| || |||| ||||||    
T  23058148 ttaacaggtccaggtgccacaacatttgctcgaatattatcctttgcccattccaatgctatgtttttggtgagttgatt 23058069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 95 - 173
Target Start/End: Complemental strand, 23081423 - 23081345
Alignment:
Q  95 acaggtccaggtgccacagcatttgcacgaatattatcctttgcccattctaatgccaagttctttgtgaattgattca 173  Q
    |||| ||||||||||||| |||| |||||||||||||||||||||||||| ||||| |||||||| | | |||||||||    
T  23081423 acagctccaggtgccacaacattagcacgaatattatcctttgcccattccaatgctaagttcttggcgcattgattca 23081345  T

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Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 330 - 387
Target Start/End: Complemental strand, 23069232 - 23069175
Alignment:
Q  330 atgcttccataaccagattcttttagaagaggatgtgcaagttgacacaaatggtaac 387  Q
    ||||| ||||| ||||||||||||| ||| || |||||||||||||||||||||||||    
T  23069232 atgctcccatatccagattcttttaaaagtgggtgtgcaagttgacacaaatggtaac 23069175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 587 - 670
Target Start/End: Complemental strand, 23091462 - 23091379
Alignment:
Q  587 tactagaatattgagctttccttgaaagatagaagaaacagtttccattaatctcttgcgttgttcatgaaatagtatatcaca 670  Q
    ||||||||||||||| |||||||||||| | |||| |||||||||||| ||| | |  ||||||||| |||||| || ||||||    
T  23091462 tactagaatattgagttttccttgaaaggttgaagcaacagtttccatcaatttttcacgttgttcacgaaataataaatcaca 23091379  T

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Target: chr7; HSP #15
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 582 - 636
Target Start/End: Complemental strand, 23056710 - 23056656
Alignment:
Q  582 gatcgtactagaatattgagctttccttgaaagatagaagaaacagtttccatta 636  Q
    |||| ||||||||||||||| |||||||||||||| |||| |||| |||||||||    
T  23056710 gatcttactagaatattgagttttccttgaaagattgaagcaacattttccatta 23056656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.000000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 305 - 383
Target Start/End: Complemental strand, 30790384 - 30790306
Alignment:
Q  305 acctgcaacggaagaagtgaacactatgcttccataaccagattcttttagaagaggatgtgcaagttgacacaaatgg 383  Q
    ||||||||| || ||| ||||||| ||||| ||||  ||||||||||||||||||||||||| |||||| |||| ||||    
T  30790384 acctgcaacagatgaaatgaacacaatgctaccatttccagattcttttagaagaggatgtgaaagttggcacagatgg 30790306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 308 - 385
Target Start/End: Original strand, 30706202 - 30706279
Alignment:
Q  308 tgcaacggaagaagtgaacactatgcttccataaccagattcttttagaagaggatgtgcaagttgacacaaatggta 385  Q
    |||||| || ||| ||||||| ||||||||||  ||||||||||| |||||||||| ||| |||||||| | ||||||    
T  30706202 tgcaacagaggaaatgaacacaatgcttccatttccagattctttaagaagaggatatgctagttgacatagatggta 30706279  T

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