View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5360_low_11 (Length: 238)

Name: NF5360_low_11
Description: NF5360
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5360_low_11
NF5360_low_11
[»] chr3 (2 HSPs)
chr3 (8-199)||(5881805-5881996)
chr3 (8-199)||(54943255-54943446)
[»] chr7 (1 HSPs)
chr7 (8-199)||(47930455-47930646)
[»] chr4 (2 HSPs)
chr4 (18-199)||(43946301-43946482)
chr4 (8-71)||(50784354-50784417)
[»] scaffold0182 (1 HSPs)
scaffold0182 (8-199)||(526-719)
[»] chr5 (2 HSPs)
chr5 (8-199)||(12833990-12834183)
chr5 (8-199)||(12865968-12866161)
[»] chr6 (1 HSPs)
chr6 (8-166)||(16859165-16859324)


Alignment Details
Target: chr3 (Bit Score: 128; Significance: 3e-66; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 8 - 199
Target Start/End: Complemental strand, 5881996 - 5881805
Alignment:
Q  8 atataatcactaatgcttaactacttaaaatcaaggcatagttacatataatagcatgcaaatgcccttttgcttcatcaaacccaactccacaattnnn 107  Q
    |||||||| ||||| ||||||||||||||||||||| | | |||||| ||||||||||||||||| |||||||||||||||||||||||||| ||||       
T  5881996 atataatctctaattcttaactacttaaaatcaaggtaaatttacatctaatagcatgcaaatgcgcttttgcttcatcaaacccaactccaaaattaaa 5881897  T
Q  108 nnnnntctttgcaaaaataatcttattttaacaataaaaaatgaccaacattttctttttatttatgttacaaaatttaaacaaacccgtgc 199  Q
         |||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  5881896 aaaaatctttgcaaaaataatcttattttaaaaataaaaaatgaccaacattttcttttcatttatgttacaaaatttaaacaaacccgtgc 5881805  T

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Target: chr3; HSP #2
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 8 - 199
Target Start/End: Complemental strand, 54943446 - 54943255
Alignment:
Q  8 atataatcactaatgcttaactacttaaaatcaaggcatagttacatataatagcatgcaaatgcccttttgcttcatcaaacccaactccacaattnnn 107  Q
    |||||||| ||||| ||||||||||||||||||||||| | |||||| | ||||||||||||||| ||||| |||||||||||||||||||| ||||       
T  54943446 atataatctctaattcttaactacttaaaatcaaggcagatttacatctgatagcatgcaaatgcgcttttacttcatcaaacccaactccaaaatttaa 54943347  T
Q  108 nnnnntctttgcaaaaataatcttattttaacaataaaaaatgaccaacattttctttttatttatgttacaaaatttaaacaaacccgtgc 199  Q
         ||||||||||||||||| || ||||| ||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||    
T  54943346 aaaaatctttgcaaaaataatcctactttaaaaataaaaaatgaccaacattttcttttgatttatgttacaaaatttaagcaaacccgtgc 54943255  T

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Target: chr7 (Bit Score: 112; Significance: 9e-57; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 8 - 199
Target Start/End: Complemental strand, 47930646 - 47930455
Alignment:
Q  8 atataatcactaatgcttaactacttaaaatcaaggcatagttacatataatagcatgcaaatgcccttttgcttcatcaaacccaactccacaattnnn 107  Q
    |||||||| ||||| ||||||||||||||||||||||| | |||||| | ||||||||||||||| ||||| |||||||||||||||||||| ||||       
T  47930646 atataatctctaattcttaactacttaaaatcaaggcagatttacatctgatagcatgcaaatgcgcttttacttcatcaaacccaactccaaaatttaa 47930547  T
Q  108 nnnnntctttgcaaaaataatcttattttaacaataaaaaatgaccaacattttctttttatttatgttacaaaatttaaacaaacccgtgc 199  Q
         ||||||||||||||||| || ||||| ||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||    
T  47930546 aaaaatctttgcaaaaataatcctactttaaaaataaaaaatgaccaacattttcttttgatttatgttacaaaatttaagcaaacccgtgc 47930455  T

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Target: chr4 (Bit Score: 110; Significance: 1e-55; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 110; E-Value: 1e-55
Query Start/End: Original strand, 18 - 199
Target Start/End: Original strand, 43946301 - 43946482
Alignment:
Q  18 taatgcttaactacttaaaatcaaggcatagttacatataatagcatgcaaatgcccttttgcttcatcaaacccaactccacaattnnnnnnnntcttt 117  Q
    |||| ||||||||||||||||||||||| | |||||| ||||||||||||||||| |||||||||||||||||||||||||| || |        |||||    
T  43946301 taattcttaactacttaaaatcaaggcaaatttacatctaatagcatgcaaatgcgcttttgcttcatcaaacccaactccaaaaataaaaaaaatcttt 43946400  T
Q  118 gcaaaaataatcttattttaacaataaaaaatgaccaacattttctttttatttatgttacaaaatttaaacaaacccgtgc 199  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||| ||||||||  |||||||||||    
T  43946401 gcaaaaataatcttattttaaaaataaaaaatgaccaacattttcttttcatttatgttaaaaaatttagtcaaacccgtgc 43946482  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 8 - 71
Target Start/End: Complemental strand, 50784417 - 50784354
Alignment:
Q  8 atataatcactaatgcttaactacttaaaatcaaggcatagttacatataatagcatgcaaatg 71  Q
    |||||||| ||||| |||||||||||||||||| |||| | |||||| |||||| || ||||||    
T  50784417 atataatctctaattcttaactacttaaaatcacggcaaatttacatctaatagtatacaaatg 50784354  T

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Target: scaffold0182 (Bit Score: 107; Significance: 9e-54; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 107; E-Value: 9e-54
Query Start/End: Original strand, 8 - 199
Target Start/End: Complemental strand, 719 - 526
Alignment:
Q  8 atataatcactaatgcttaactacttaaaatcaaggcatagttacatataatagcatgcaaatgcccttttgcttcatcaaacccaactccacaattnnn 107  Q
    |||||||| ||||| ||||||||||||||||||||||| | |||||| ||||||||||||||||| |||||||||||||||||||||||||| |||        
T  719 atataatctctaattcttaactacttaaaatcaaggcaaatttacatctaatagcatgcaaatgcgcttttgcttcatcaaacccaactccaaaataaat 620  T
Q  108 nnnnnt--ctttgcaaaaataatcttattttaacaataaaaaatgaccaacattttctttttatttatgttacaaaatttaaacaaacccgtgc 199  Q
            ||||||||||||||||||||||||| |||||||||| |||||||||||||||| |||||||||||||||||||| |||||||||||    
T  619 aaataaacctttgcaaaaataatcttattttaaaaataaaaaattaccaacattttcttttcatttatgttacaaaatttaagcaaacccgtgc 526  T

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Target: chr5 (Bit Score: 103; Significance: 2e-51; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 8 - 199
Target Start/End: Original strand, 12833990 - 12834183
Alignment:
Q  8 atataatcactaatgcttaactacttaaaatcaaggcatagttacatataatagcatgcaaatgcccttttgcttcatcaaacccaactccacaatt--n 105  Q
    |||||||| ||||| ||||||||||||||||||||||| | |||||| ||||||||||||||||| |||||||||||||||||||||||||| || |       
T  12833990 atataatctctaattcttaactacttaaaatcaaggcagatttacatctaatagcatgcaaatgcgcttttgcttcatcaaacccaactccaaaaataaa 12834089  T
Q  106 nnnnnnntctttgcaaaaataatcttattttaacaataaaaaatgaccaacattttctttttatttatgttacaaaatttaaacaaacccgtgc 199  Q
           |||||||||||||| ||||||||||| |||||||||||| |||||||||||||| |||||||||| ||||||||| |||||||||||    
T  12834090 ataaaaatctttgcaaaaatactcttattttaaaaataaaaaatgatcaacattttcttttcatttatgttaaaaaatttaatcaaacccgtgc 12834183  T

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Target: chr5; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 8 - 199
Target Start/End: Original strand, 12865968 - 12866161
Alignment:
Q  8 atataatcactaatgcttaactacttaaaatcaaggcatagttacatataatagcatgcaaatgcccttttgcttcatcaaacccaactccacaatt--n 105  Q
    |||||||| ||||| ||||||||||||||||||||||| | |||||| ||||||||||||||||| |||||||||||||||||||||||||| || |       
T  12865968 atataatctctaattcttaactacttaaaatcaaggcagatttacatctaatagcatgcaaatgcgcttttgcttcatcaaacccaactccaaaaataaa 12866067  T
Q  106 nnnnnnntctttgcaaaaataatcttattttaacaataaaaaatgaccaacattttctttttatttatgttacaaaatttaaacaaacccgtgc 199  Q
           |||||||||||||| ||||||||||| |||||||||||| |||||||||||||| |||||||||| ||||||||| |||||||||||    
T  12866068 ataaaaatctttgcaaaaatactcttattttaaaaataaaaaatgatcaacattttcttttcatttatgttaaaaaatttaatcaaacccgtgc 12866161  T

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Target: chr6 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 8 - 166
Target Start/End: Original strand, 16859165 - 16859324
Alignment:
Q  8 atataatcactaatgcttaactacttaaaatcaaggcatagttacatataatagcatgcaaatgcccttttgcttcatcaaacccaactccacaatt-nn 106  Q
    |||||||| |||||  |||||||||||||||||||| | | |||||| ||||||||||||||||| |||||||||||||||||||||||||| ||||       
T  16859165 atataatctctaatttttaactacttaaaatcaaggaaaatttacatctaatagcatgcaaatgcgcttttgcttcatcaaacccaactccaaaattaaa 16859264  T
Q  107 nnnnnntctttgcaaaaataatcttattttaacaataaaaaatgaccaacattttctttt 166  Q
          |||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  16859265 aaaaaatctttgcaaaaataatcttattttaaaaataaaaaatgaccaacattttctttt 16859324  T

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