View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5360_low_3 (Length: 368)
Name: NF5360_low_3
Description: NF5360
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5360_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 18 - 347
Target Start/End: Original strand, 2761360 - 2761689
Alignment:
| Q |
18 |
agtttcatgatgaagacaaaacgtagagtacgcaggacaaaagataaggatacgaaataccacacatttcaaatacaaaatgtaacaatctgtttcttcc |
117 |
Q |
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| T |
2761360 |
agtttcatgatgaagacaaaacgtagagtacgcaggacaaaagataaggatacgaaataccacacatttcaaatacaaaatgtaacaatctgtttcttgc |
2761459 |
T |
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| Q |
118 |
ccaaactttttagatatgtcgtcaacaccaccatctttctcttttcctgcaccctcaacactataatcattcagagttgcaacaataaggagaatcaaaa |
217 |
Q |
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| T |
2761460 |
ccaaactttttagatatgtcgtcaacaccaacatctttctcttttcctgcaccttcaacactataatcattcagagttgcaacaataaggagaatcaaaa |
2761559 |
T |
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| Q |
218 |
ttagtgaagcagtgatggttttggccattgtgtaagtaagagtatttgcatggaataaattggctacaaatcattccaatttatagaacttgtgatttcc |
317 |
Q |
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| T |
2761560 |
ttagtgaagcagtgatggttttggccattgtgtaagtaagagtatttgcatggaataaattggctacaaataattccaatttatagaacttgtgatttcc |
2761659 |
T |
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| Q |
318 |
ttgaatgataagtgaacgtgttgaatttgg |
347 |
Q |
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| T |
2761660 |
ttgaatgataagtgaacgtattgaatttgg |
2761689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 262 - 333
Target Start/End: Original strand, 11952570 - 11952641
Alignment:
| Q |
262 |
tttgcatggaataaattggctacaaatcattccaatttatagaacttgtgatttccttgaatgataagtgaa |
333 |
Q |
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| T |
11952570 |
tttgcatggaataaaagggctctaaattagtctaatttatagaactagtgatttccttaaatgagaagtgaa |
11952641 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 164 - 245
Target Start/End: Original strand, 41814414 - 41814495
Alignment:
| Q |
164 |
ctgcaccctcaacactataatcattcagagttgcaacaataaggagaatcaaaattagtgaagcagtgatggttttggccat |
245 |
Q |
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| T |
41814414 |
ctgcaccctcaacactacaatcattgataattgccacaacaaggagaactaaaatcaatgaagtagtgatgatttttgccat |
41814495 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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