View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5360_low_6 (Length: 268)

Name: NF5360_low_6
Description: NF5360
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5360_low_6
NF5360_low_6
[»] chr6 (30 HSPs)
chr6 (75-252)||(26980182-26980359)
chr6 (93-252)||(26961884-26962043)
chr6 (1-73)||(27074160-27074232)
chr6 (91-159)||(26952484-26952552)
chr6 (201-252)||(27602062-27602113)
chr6 (101-236)||(26649265-26649400)
chr6 (101-236)||(26755233-26755368)
chr6 (122-236)||(27674834-27674948)
chr6 (111-244)||(26886890-26887023)
chr6 (124-236)||(26638191-26638303)
chr6 (124-236)||(26744157-26744269)
chr6 (97-145)||(31290316-31290364)
chr6 (203-245)||(25547760-25547802)
chr6 (204-250)||(26625907-26625953)
chr6 (204-250)||(26731884-26731930)
chr6 (96-158)||(27657975-27658037)
chr6 (204-249)||(26851286-26851331)
chr6 (102-245)||(28789165-28789305)
chr6 (102-245)||(28795189-28795329)
chr6 (203-244)||(31287360-31287401)
chr6 (201-235)||(27608459-27608493)
chr6 (204-246)||(27681736-27681778)
chr6 (203-245)||(27695932-27695974)
chr6 (203-236)||(25485779-25485812)
chr6 (203-236)||(25513664-25513697)
chr6 (203-236)||(26145786-26145819)
chr6 (203-236)||(27590467-27590500)
chr6 (1-50)||(27681897-27681946)
chr6 (194-235)||(27715832-27715873)
chr6 (109-161)||(27695838-27695890)
[»] chr1 (3 HSPs)
chr1 (127-244)||(28129920-28130037)
chr1 (127-252)||(28124889-28125014)
chr1 (201-245)||(265670-265714)
[»] scaffold0277 (2 HSPs)
scaffold0277 (102-258)||(1931-2084)
scaffold0277 (102-245)||(10894-11034)
[»] chr4 (9 HSPs)
chr4 (111-159)||(18652772-18652820)
chr4 (111-159)||(18676854-18676902)
chr4 (111-159)||(18686903-18686951)
chr4 (111-159)||(18696697-18696745)
chr4 (111-159)||(18721368-18721416)
chr4 (204-236)||(18676947-18676979)
chr4 (204-236)||(18721461-18721493)
chr4 (204-236)||(18726380-18726412)
chr4 (204-236)||(18728883-18728915)
[»] scaffold0419 (1 HSPs)
scaffold0419 (102-159)||(10401-10455)
[»] scaffold0349 (1 HSPs)
scaffold0349 (194-235)||(16072-16113)
[»] chr8 (1 HSPs)
chr8 (203-252)||(22024049-22024098)


Alignment Details
Target: chr6 (Bit Score: 178; Significance: 4e-96; HSPs: 30)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 75 - 252
Target Start/End: Complemental strand, 26980359 - 26980182
Alignment:
Q  75 caccaaacctgactcaattatatatcaaatactatatattgcaaaataaaacaacaacaaacctgactcaatagccttcttctacattccaaacttaatg 174  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26980359 caccaaacctgactcaattatatatcaaatactatatattgcaaaataaaacaacaacaaacctgactcaatagccttcttctacattccaaacttaatg 26980260  T
Q  175 atacacatttgattgccgaaatctcattaagatttggtggaaaccctctaatttcctcaagaaacttgcagccatcca 252  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26980259 atacacatttgattgccgaaatctcattaagatttggtggaaaccctctaatttcctcaagaaacttgcagccatcca 26980182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 93 - 252
Target Start/End: Complemental strand, 26962043 - 26961884
Alignment:
Q  93 tatatatcaaatactatatattgcaaaataaaacaacaacaaacctgactcaatagccttcttctacattccaaacttaatgatacacatttgattgccg 192  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| ||||| | | ||| |    
T  26962043 tatatatcaaatactatatattgcaagataaaacaacaacaaacctgactcaatagccttcttctactttccaaactcaatgattcacatctcaatgcag 26961944  T
Q  193 aaatctcattaagatttggtggaaaccctctaatttcctcaagaaacttgcagccatcca 252  Q
    ||| |     |||||||||||||| |||||||||||||||||||||||||||| ||||||    
T  26961943 aaagccgtccaagatttggtggaatccctctaatttcctcaagaaacttgcagtcatcca 26961884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 1 - 73
Target Start/End: Complemental strand, 27074232 - 27074160
Alignment:
Q  1 tgtagttcctgttagtttatacaaatgaataataattacacaatgaattatatataaaatgcaagacaaaaca 73  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27074232 tgtagttcctgttggtttatacaaatgaataataattacacaatgaattatatataaaatgcaagacaaaaca 27074160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 91 - 159
Target Start/End: Complemental strand, 26952552 - 26952484
Alignment:
Q  91 attatatatcaaatactatatattgcaaaataaaacaacaacaaacctgactcaatagccttcttctac 159  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||    
T  26952552 attatatatcaaatactatatattgcaagataaaacaacaacaaacctgactcaatagcattcttctac 26952484  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 201 - 252
Target Start/End: Original strand, 27602062 - 27602113
Alignment:
Q  201 ttaagatttggtggaaaccctctaatttcctcaagaaacttgcagccatcca 252  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27602062 ttaagatttggtggaaaccctctaatttcctcaagaaacttgcagccatcca 27602113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 101 - 236
Target Start/End: Complemental strand, 26649400 - 26649265
Alignment:
Q  101 aaatactatatattgcaaaataaaacaacaacaaacctgactcaatagccttcttctacattccaaacttaatgatacacatttgattgccgaaatctca 200  Q
    |||||| ||||||||||| ||||||||||||| |||||||||||||| | ||||||||| |    |||| |||||| ||||| | | ||| |||| |       
T  26649400 aaataccatatattgcaagataaaacaacaacgaacctgactcaataacattcttctacttgaggaactcaatgattcacatctcaatgcagaaagccat 26649301  T
Q  201 ttaagatttggtggaaaccctctaatttcctcaaga 236  Q
    |||||||||||||||| ||| |||||||||||||||    
T  26649300 ttaagatttggtggaatccccctaatttcctcaaga 26649265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 101 - 236
Target Start/End: Complemental strand, 26755368 - 26755233
Alignment:
Q  101 aaatactatatattgcaaaataaaacaacaacaaacctgactcaatagccttcttctacattccaaacttaatgatacacatttgattgccgaaatctca 200  Q
    |||||| ||||||||||| ||||||||||||| |||||||||||||| | ||||||||| |    |||| |||||| ||||| | | ||| |||| |       
T  26755368 aaataccatatattgcaagataaaacaacaacgaacctgactcaataacattcttctacttgaggaactcaatgattcacatctcaatgcagaaagccat 26755269  T
Q  201 ttaagatttggtggaaaccctctaatttcctcaaga 236  Q
    |||||||||||||||| ||| |||||||||||||||    
T  26755268 ttaagatttggtggaatccccctaatttcctcaaga 26755233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 122 - 236
Target Start/End: Original strand, 27674834 - 27674948
Alignment:
Q  122 aaaacaacaacaaacctgactcaatagccttcttctacattccaaacttaatgatacacatttgat-tgccgaaatctcattaagatttggtggaaaccc 220  Q
    ||||||||||| ||||||||||| || | |||||||||||    |||| ||||||  ||||| ||| ||| |||| ||| |||||||||||||||| |||    
T  27674834 aaaacaacaactaacctgactcattaacattcttctacatgaggaactcaatgatttacatt-gatatgcggaaagctctttaagatttggtggaatccc 27674932  T
Q  221 tctaatttcctcaaga 236  Q
    ||||||||||||||||    
T  27674933 tctaatttcctcaaga 27674948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 111 - 244
Target Start/End: Complemental strand, 26887023 - 26886890
Alignment:
Q  111 tattgcaaaataaaacaacaacaaacctgactcaatagccttcttctacattccaaacttaatgatacacatttgattgccgaaatctcattaagatttg 210  Q
    |||||||| ||| ||||| |||||||||||||||||| | ||||||||| |    |||| |||||    ||||| || || ||||  || ||||||||||    
T  26887023 tattgcaagatagaacaaaaacaaacctgactcaataacattcttctacttgaggaactcaatgaatggcattttatagcagaaaggtctttaagatttg 26886924  T
Q  211 gtggaaaccctctaatttcctcaagaaacttgca 244  Q
    |||| | ||||||||||||||||||| |||||||    
T  26886923 gtggtatccctctaatttcctcaagagacttgca 26886890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 124 - 236
Target Start/End: Complemental strand, 26638303 - 26638191
Alignment:
Q  124 aacaacaacaaacctgactcaatagccttcttctacattccaaacttaatgatacacatttgattgccgaaatctcattaagatttggtggaaaccctct 223  Q
    |||||||||||||||||||||||||||||||||||| |    |||| |||||  | ||||  ||||| || |  | ||| ||||||||||||| ||||||    
T  26638303 aacaacaacaaacctgactcaatagccttcttctacttgaggaactcaatgaatcgcattccattgcagacaagtaatttagatttggtggaatccctct 26638204  T
Q  224 aatttcctcaaga 236  Q
    |||||| ||||||    
T  26638203 aatttcttcaaga 26638191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 124 - 236
Target Start/End: Complemental strand, 26744269 - 26744157
Alignment:
Q  124 aacaacaacaaacctgactcaatagccttcttctacattccaaacttaatgatacacatttgattgccgaaatctcattaagatttggtggaaaccctct 223  Q
    |||||||||||||||||||||||||||||||||||| |    |||| |||||  | ||||  ||||| || |  | ||| ||||||||||||| ||||||    
T  26744269 aacaacaacaaacctgactcaatagccttcttctacttgaggaactcaatgaatcgcattccattgcagacaagtaatttagatttggtggaatccctct 26744170  T
Q  224 aatttcctcaaga 236  Q
    |||||| ||||||    
T  26744169 aatttcttcaaga 26744157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 97 - 145
Target Start/End: Complemental strand, 31290364 - 31290316
Alignment:
Q  97 tatcaaatactatatattgcaaaataaaacaacaacaaacctgactcaa 145  Q
    ||||||| |||||||||||||| ||||||||||||| ||||||||||||    
T  31290364 tatcaaacactatatattgcaagataaaacaacaactaacctgactcaa 31290316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 203 - 245
Target Start/End: Complemental strand, 25547802 - 25547760
Alignment:
Q  203 aagatttggtggaaaccctctaatttcctcaagaaacttgcag 245  Q
    |||||||||||||| ||||||||||||||||||||| ||||||    
T  25547802 aagatttggtggaatccctctaatttcctcaagaaaattgcag 25547760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 204 - 250
Target Start/End: Complemental strand, 26625953 - 26625907
Alignment:
Q  204 agatttggtggaaaccctctaatttcctcaagaaacttgcagccatc 250  Q
    ||||||||||||| ||||||||||||||||||| ||| |||||||||    
T  26625953 agatttggtggaatccctctaatttcctcaagagactcgcagccatc 26625907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 204 - 250
Target Start/End: Complemental strand, 26731930 - 26731884
Alignment:
Q  204 agatttggtggaaaccctctaatttcctcaagaaacttgcagccatc 250  Q
    ||||||||||||| ||||||||||||||||||| ||| |||||||||    
T  26731930 agatttggtggaatccctctaatttcctcaagagactcgcagccatc 26731884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 96 - 158
Target Start/End: Original strand, 27657975 - 27658037
Alignment:
Q  96 atatcaaatactatatattgcaaaataaaacaacaacaaacctgactcaatagccttcttcta 158  Q
    |||||||||| |||||| ||||| | ||||||||||||||||||||| |||| | ||||||||    
T  27657975 atatcaaataatatatactgcaacacaaaacaacaacaaacctgactaaataacattcttcta 27658037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 204 - 249
Target Start/End: Complemental strand, 26851331 - 26851286
Alignment:
Q  204 agatttggtggaaaccctctaatttcctcaagaaacttgcagccat 249  Q
    ||||| ||||||| ||||||||||||||||||||| ||||||||||    
T  26851331 agattcggtggaatccctctaatttcctcaagaaaattgcagccat 26851286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 102 - 245
Target Start/End: Complemental strand, 28789305 - 28789165
Alignment:
Q  102 aatactatatattgcaaaataaaacaacaacaaacctgactcaatagccttcttctacattccaaacttaatgatacacatttgattgccgaaatctcat 201  Q
    ||||||||||||||||| ||||||||   ||||||||||||||||||| || |||||| |    |||| ||||||   |||  |||||| |||| |        
T  28789305 aatactatatattgcaagataaaaca---acaaacctgactcaatagcatttttctacttgaggaactcaatgatttgcatccgattgcagaaagccttg 28789209  T
Q  202 taagatttggtggaaaccctctaatttcctcaagaaacttgcag 245  Q
     |||||||||||||| ||||||||||||||| ||| ||||||||    
T  28789208 caagatttggtggaatccctctaatttcctccagagacttgcag 28789165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 102 - 245
Target Start/End: Complemental strand, 28795329 - 28795189
Alignment:
Q  102 aatactatatattgcaaaataaaacaacaacaaacctgactcaatagccttcttctacattccaaacttaatgatacacatttgattgccgaaatctcat 201  Q
    |||||| |||||||||| ||||||||||||   ||||||||||||||| ||||||||| |    |||| ||||||   |||   ||||| |||| |   |    
T  28795329 aatactctatattgcaagataaaacaacaa---acctgactcaatagcattcttctacttgaggaactcaatgatttgcatcccattgcagaaagccttt 28795233  T
Q  202 taagatttggtggaaaccctctaatttcctcaagaaacttgcag 245  Q
     |||||||||||||| ||||||||||||||| ||| ||||||||    
T  28795232 caagatttggtggaatccctctaatttcctcgagagacttgcag 28795189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 203 - 244
Target Start/End: Complemental strand, 31287401 - 31287360
Alignment:
Q  203 aagatttggtggaaaccctctaatttcctcaagaaacttgca 244  Q
    |||||||||||||| ||||||||||||||||||| |||||||    
T  31287401 aagatttggtggaatccctctaatttcctcaagagacttgca 31287360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 201 - 235
Target Start/End: Original strand, 27608459 - 27608493
Alignment:
Q  201 ttaagatttggtggaaaccctctaatttcctcaag 235  Q
    |||||||||||||||| ||||||||||||||||||    
T  27608459 ttaagatttggtggaatccctctaatttcctcaag 27608493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 204 - 246
Target Start/End: Complemental strand, 27681778 - 27681736
Alignment:
Q  204 agatttggtggaaaccctctaatttcctcaagaaacttgcagc 246  Q
    ||||||||||||| ||||||||||||||||||| ||| |||||    
T  27681778 agatttggtggaatccctctaatttcctcaagagactcgcagc 27681736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 203 - 245
Target Start/End: Original strand, 27695932 - 27695974
Alignment:
Q  203 aagatttggtggaaaccctctaatttcctcaagaaacttgcag 245  Q
    |||||||||||||| ||||||||||||||||||  ||||||||    
T  27695932 aagatttggtggaatccctctaatttcctcaagggacttgcag 27695974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 203 - 236
Target Start/End: Complemental strand, 25485812 - 25485779
Alignment:
Q  203 aagatttggtggaaaccctctaatttcctcaaga 236  Q
    |||||||||||||| |||||||||||||||||||    
T  25485812 aagatttggtggaatccctctaatttcctcaaga 25485779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 203 - 236
Target Start/End: Complemental strand, 25513697 - 25513664
Alignment:
Q  203 aagatttggtggaaaccctctaatttcctcaaga 236  Q
    |||||||||||||| |||||||||||||||||||    
T  25513697 aagatttggtggaatccctctaatttcctcaaga 25513664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 203 - 236
Target Start/End: Complemental strand, 26145819 - 26145786
Alignment:
Q  203 aagatttggtggaaaccctctaatttcctcaaga 236  Q
    |||||||||||||| |||||||||||||||||||    
T  26145819 aagatttggtggaatccctctaatttcctcaaga 26145786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 203 - 236
Target Start/End: Original strand, 27590467 - 27590500
Alignment:
Q  203 aagatttggtggaaaccctctaatttcctcaaga 236  Q
    |||||||||||||| |||||||||||||||||||    
T  27590467 aagatttggtggaatccctctaatttcctcaaga 27590500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 27681946 - 27681897
Alignment:
Q  1 tgtagttcctgttagtttatacaaatgaataataattacacaatgaatta 50  Q
    ||||||| ||||| |||||||||||  |||||||||||||| ||||||||    
T  27681946 tgtagtttctgtttgtttatacaaaataataataattacactatgaatta 27681897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 194 - 235
Target Start/End: Original strand, 27715832 - 27715873
Alignment:
Q  194 aatctcattaagatttggtggaaaccctctaatttcctcaag 235  Q
    |||||| || ||||||||||||| ||||||||||||||||||    
T  27715832 aatctcttttagatttggtggaatccctctaatttcctcaag 27715873  T

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Target: chr6; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 109 - 161
Target Start/End: Original strand, 27695838 - 27695890
Alignment:
Q  109 tatattgcaaaataaaacaacaacaaacctgactcaatagccttcttctacat 161  Q
    |||| ||||| | ||||||||||||||||||||||| || | |||||||||||    
T  27695838 tatagtgcaataaaaaacaacaacaaacctgactcattaacattcttctacat 27695890  T

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Target: chr1 (Bit Score: 46; Significance: 3e-17; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 127 - 244
Target Start/End: Original strand, 28129920 - 28130037
Alignment:
Q  127 aacaacaaacctgactcaatagccttcttctacattccaaacttaatgatacacatttgattgccgaaatctcattaagatttggtggaaaccctctaat 226  Q
    ||||||||||||||||||||||| |||||||||||    || |||||||| |||||   ||||| |||| |   || || ||||||||||||||||||||    
T  28129920 aacaacaaacctgactcaatagcattcttctacatgaggaagttaatgattcacatcgcattgcagaaaaccgttttaggtttggtggaaaccctctaat 28130019  T
Q  227 ttcctcaagaaacttgca 244  Q
    |||||||||| |||||||    
T  28130020 ttcctcaagagacttgca 28130037  T

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Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 127 - 252
Target Start/End: Original strand, 28124889 - 28125014
Alignment:
Q  127 aacaacaaacctgactcaatagccttcttctacattccaaacttaatgatacacatttgattgccgaaatctcattaagatttggtggaaaccctctaat 226  Q
    ||||||||||||| ||||||||| |||||||||||    || |||||||| |||||   ||||| |||| |   || || |||||||||| |||||||||    
T  28124889 aacaacaaacctggctcaatagcattcttctacatgaggaagttaatgattcacatcgcattgcagaaaaccattttaggtttggtggaatccctctaat 28124988  T
Q  227 ttcctcaagaaacttgcagccatcca 252  Q
    |||||||||| |||||||| ||||||    
T  28124989 ttcctcaagagacttgcagtcatcca 28125014  T

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Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 201 - 245
Target Start/End: Original strand, 265670 - 265714
Alignment:
Q  201 ttaagatttggtggaaaccctctaatttcctcaagaaacttgcag 245  Q
    |||||||||||||||| ||||||||||||||||||| ||||||||    
T  265670 ttaagatttggtggaatccctctaatttcctcaagatacttgcag 265714  T

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Target: scaffold0277 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 102 - 258
Target Start/End: Original strand, 1931 - 2084
Alignment:
Q  102 aatactatatattgcaaaataaaacaacaacaaacctgactcaatagccttcttctacattccaaacttaatgatacacatttgattgccgaaatctcat 201  Q
    ||||||||||||||||| ||||||||   ||||||||||||||||||| ||||||||| |    |||| ||||||   |||   ||||| |||| |   |    
T  1931 aatactatatattgcaagataaaaca---acaaacctgactcaatagcattcttctacttgaagaactcaatgatttgcatcccattgcagaaagcattt 2027  T
Q  202 taagatttggtggaaaccctctaatttcctcaagaaacttgcagccatccagtataa 258  Q
     |||||||||||||| ||||||||||||||| ||| ||||||||  ||||| |||||    
T  2028 caagatttggtggaatccctctaatttcctccagagacttgcagttatccaatataa 2084  T

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Target: scaffold0277; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 102 - 245
Target Start/End: Original strand, 10894 - 11034
Alignment:
Q  102 aatactatatattgcaaaataaaacaacaacaaacctgactcaatagccttcttctacattccaaacttaatgatacacatttgattgccgaaatctcat 201  Q
    ||||||||||||||||| ||||   ||||||||||||||||||||||| || |||||| |    |||| ||||||   |||  |||||| |||| |        
T  10894 aatactatatattgcaagataa---aacaacaaacctgactcaatagcatttttctacttgaggaactcaatgatttgcatccgattgcagaaagccttg 10990  T
Q  202 taagatttggtggaaaccctctaatttcctcaagaaacttgcag 245  Q
     |||||||||||||| ||||||||||||||| ||| ||||||||    
T  10991 caagatttggtggaatccctctaatttcctccagagacttgcag 11034  T

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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 111 - 159
Target Start/End: Original strand, 18652772 - 18652820
Alignment:
Q  111 tattgcaaaataaaacaacaacaaacctgactcaatagccttcttctac 159  Q
    |||||||| | |||||||||||||||||||||||||| | |||||||||    
T  18652772 tattgcaagaaaaaacaacaacaaacctgactcaataacattcttctac 18652820  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 111 - 159
Target Start/End: Original strand, 18676854 - 18676902
Alignment:
Q  111 tattgcaaaataaaacaacaacaaacctgactcaatagccttcttctac 159  Q
    |||||||| | |||||||||||||||||||||||||| | |||||||||    
T  18676854 tattgcaagaaaaaacaacaacaaacctgactcaataacattcttctac 18676902  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 111 - 159
Target Start/End: Original strand, 18686903 - 18686951
Alignment:
Q  111 tattgcaaaataaaacaacaacaaacctgactcaatagccttcttctac 159  Q
    |||||||| | |||||||||||||||||||||||||| | |||||||||    
T  18686903 tattgcaagaaaaaacaacaacaaacctgactcaataacattcttctac 18686951  T

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Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 111 - 159
Target Start/End: Original strand, 18696697 - 18696745
Alignment:
Q  111 tattgcaaaataaaacaacaacaaacctgactcaatagccttcttctac 159  Q
    |||||||| | |||||||||||||||||||||||||| | |||||||||    
T  18696697 tattgcaagaaaaaacaacaacaaacctgactcaataacattcttctac 18696745  T

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Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 111 - 159
Target Start/End: Original strand, 18721368 - 18721416
Alignment:
Q  111 tattgcaaaataaaacaacaacaaacctgactcaatagccttcttctac 159  Q
    |||||||| | |||||||||||||||||||||||||| | |||||||||    
T  18721368 tattgcaagaaaaaacaacaacaaacctgactcaataacattcttctac 18721416  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 204 - 236
Target Start/End: Original strand, 18676947 - 18676979
Alignment:
Q  204 agatttggtggaaaccctctaatttcctcaaga 236  Q
    ||||| |||||||||||||||||||||||||||    
T  18676947 agattcggtggaaaccctctaatttcctcaaga 18676979  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 204 - 236
Target Start/End: Original strand, 18721461 - 18721493
Alignment:
Q  204 agatttggtggaaaccctctaatttcctcaaga 236  Q
    ||||| |||||||||||||||||||||||||||    
T  18721461 agattcggtggaaaccctctaatttcctcaaga 18721493  T

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Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 204 - 236
Target Start/End: Original strand, 18726380 - 18726412
Alignment:
Q  204 agatttggtggaaaccctctaatttcctcaaga 236  Q
    ||||| |||||||||||||||||||||||||||    
T  18726380 agattcggtggaaaccctctaatttcctcaaga 18726412  T

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Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 204 - 236
Target Start/End: Original strand, 18728883 - 18728915
Alignment:
Q  204 agatttggtggaaaccctctaatttcctcaaga 236  Q
    ||||| |||||||||||||||||||||||||||    
T  18728883 agattcggtggaaaccctctaatttcctcaaga 18728915  T

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Target: scaffold0419 (Bit Score: 32; Significance: 0.000000006; HSPs: 1)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 102 - 159
Target Start/End: Complemental strand, 10455 - 10401
Alignment:
Q  102 aatactatatattgcaaaataaaacaacaacaaacctgactcaatagccttcttctac 159  Q
    |||||| |||||||||| ||||||||||||   ||||||||||||||| |||||||||    
T  10455 aatactctatattgcaagataaaacaacaa---acctgactcaatagcattcttctac 10401  T

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Target: scaffold0349 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 194 - 235
Target Start/End: Complemental strand, 16113 - 16072
Alignment:
Q  194 aatctcattaagatttggtggaaaccctctaatttcctcaag 235  Q
    |||||| || ||||||||||||| ||||||||||||||||||    
T  16113 aatctcttttagatttggtggaatccctctaatttcctcaag 16072  T

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Target: chr8 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 203 - 252
Target Start/End: Complemental strand, 22024098 - 22024049
Alignment:
Q  203 aagatttggtggaaaccctctaatttcctcaagaaacttgcagccatcca 252  Q
    |||||||||||||| ||||||||||||||||| | | ||||||| |||||    
T  22024098 aagatttggtggaatccctctaatttcctcaacagatttgcagcgatcca 22024049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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