View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5360_low_8 (Length: 248)

Name: NF5360_low_8
Description: NF5360
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5360_low_8
NF5360_low_8
[»] scaffold0182 (2 HSPs)
scaffold0182 (154-238)||(1181-1265)
scaffold0182 (99-153)||(1099-1153)
[»] chr3 (4 HSPs)
chr3 (154-238)||(5882442-5882526)
chr3 (154-238)||(54943899-54943983)
chr3 (99-153)||(54943817-54943871)
chr3 (99-153)||(5882360-5882414)
[»] chr4 (2 HSPs)
chr4 (154-238)||(43945759-43945843)
chr4 (100-153)||(43945871-43945924)
[»] chr7 (2 HSPs)
chr7 (154-238)||(47931098-47931182)
chr7 (99-153)||(47931016-47931070)
[»] chr6 (2 HSPs)
chr6 (154-238)||(16858637-16858721)
chr6 (102-153)||(16858749-16858800)
[»] chr5 (2 HSPs)
chr5 (100-143)||(12831096-12831139)
chr5 (100-143)||(12863076-12863119)


Alignment Details
Target: scaffold0182 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 154 - 238
Target Start/End: Original strand, 1181 - 1265
Alignment:
Q  154 cagtttccaaggctaaatcaatcattgatccgtattgaccatcataaacgatgtcggcggtgtcattgtcgtagattgctctctg 238  Q
    ||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||    
T  1181 cagtttccaaggctaaatcaatccttgatccgtattcaccatcataaacgatgtcggcggtgttattgtcgtagattgctctctg 1265  T

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Target: scaffold0182; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 99 - 153
Target Start/End: Original strand, 1099 - 1153
Alignment:
Q  99 cacaactcaaaccctaaaaacattaaattttttaaatcataaaatccttctaccc 153  Q
    |||||||||||||||||||||||||||  ||||||||||||||||||||||||||    
T  1099 cacaactcaaaccctaaaaacattaaaaattttaaatcataaaatccttctaccc 1153  T

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Target: chr3 (Bit Score: 73; Significance: 2e-33; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 154 - 238
Target Start/End: Original strand, 5882442 - 5882526
Alignment:
Q  154 cagtttccaaggctaaatcaatcattgatccgtattgaccatcataaacgatgtcggcggtgtcattgtcgtagattgctctctg 238  Q
    ||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||    
T  5882442 cagtttccaaggctaaatcaatccttgatccgtattcaccatcataaacgatgtcggcggtgttattgtcgtagattgctctctg 5882526  T

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Target: chr3; HSP #2
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 154 - 238
Target Start/End: Original strand, 54943899 - 54943983
Alignment:
Q  154 cagtttccaaggctaaatcaatcattgatccgtattgaccatcataaacgatgtcggcggtgtcattgtcgtagattgctctctg 238  Q
    |||||||||||| |||||||||| |||||||||||| |||||||||||||||||||||| ||| |||||||||||||||||||||    
T  54943899 cagtttccaagggtaaatcaatccttgatccgtattcaccatcataaacgatgtcggcgctgttattgtcgtagattgctctctg 54943983  T

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Target: chr3; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 99 - 153
Target Start/End: Original strand, 54943817 - 54943871
Alignment:
Q  99 cacaactcaaaccctaaaaacattaaattttttaaatcataaaatccttctaccc 153  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  54943817 cacaactcaaaccctaaaaacattaaattttttaaatcataaaatccttctaccc 54943871  T

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Target: chr3; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 99 - 153
Target Start/End: Original strand, 5882360 - 5882414
Alignment:
Q  99 cacaactcaaaccctaaaaacattaaattttttaaatcataaaatccttctaccc 153  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  5882360 cacaactcaaaccctaaaaacattaaattttttaaatcataaaatccgtctaccc 5882414  T

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Target: chr4 (Bit Score: 69; Significance: 4e-31; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 154 - 238
Target Start/End: Complemental strand, 43945843 - 43945759
Alignment:
Q  154 cagtttccaaggctaaatcaatcattgatccgtattgaccatcataaacgatgtcggcggtgtcattgtcgtagattgctctctg 238  Q
    ||||||| ||||||||||||||| |||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||    
T  43945843 cagtttcaaaggctaaatcaatccttgatccgtattcaccatcataaacgatgtcggcggtgttattgtcgtagattgctctctg 43945759  T

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Target: chr4; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 100 - 153
Target Start/End: Complemental strand, 43945924 - 43945871
Alignment:
Q  100 acaactcaaaccctaaaaacattaaattttttaaatcataaaatccttctaccc 153  Q
    |||||||||| ||||||||| |||||||||||||||||||||||||||||||||    
T  43945924 acaactcaaatcctaaaaacgttaaattttttaaatcataaaatccttctaccc 43945871  T

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Target: chr7 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 154 - 238
Target Start/End: Original strand, 47931098 - 47931182
Alignment:
Q  154 cagtttccaaggctaaatcaatcattgatccgtattgaccatcataaacgatgtcggcggtgtcattgtcgtagattgctctctg 238  Q
    |||||||||||| |||||||||| |||||||||||| |||||||||||||||||||||| ||| |||||||||||||||||||||    
T  47931098 cagtttccaagggtaaatcaatccttgatccgtattcaccatcataaacgatgtcggcgctgttattgtcgtagattgctctctg 47931182  T

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Target: chr7; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 99 - 153
Target Start/End: Original strand, 47931016 - 47931070
Alignment:
Q  99 cacaactcaaaccctaaaaacattaaattttttaaatcataaaatccttctaccc 153  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47931016 cacaactcaaaccctaaaaacattaaattttttaaatcataaaatccttctaccc 47931070  T

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Target: chr6 (Bit Score: 65; Significance: 1e-28; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 154 - 238
Target Start/End: Complemental strand, 16858721 - 16858637
Alignment:
Q  154 cagtttccaaggctaaatcaatcattgatccgtattgaccatcataaacgatgtcggcggtgtcattgtcgtagattgctctctg 238  Q
    |||||||||||| |||||||||| |||||||||||| |||||||||||||||||||||||||| ||||| |||||||||||||||    
T  16858721 cagtttccaagggtaaatcaatccttgatccgtattcaccatcataaacgatgtcggcggtgtaattgttgtagattgctctctg 16858637  T

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Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 102 - 153
Target Start/End: Complemental strand, 16858800 - 16858749
Alignment:
Q  102 aactcaaaccctaaaaacattaaattttttaaatcataaaatccttctaccc 153  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  16858800 aactcaaaccctaaaaacattaaatattttaaatcataaaatccttctaccc 16858749  T

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Target: chr5 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 100 - 143
Target Start/End: Complemental strand, 12831139 - 12831096
Alignment:
Q  100 acaactcaaaccctaaaaacattaaattttttaaatcataaaat 143  Q
    |||||||||||||||||||| |||||||||||||||||||||||    
T  12831139 acaactcaaaccctaaaaacgttaaattttttaaatcataaaat 12831096  T

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Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 100 - 143
Target Start/End: Complemental strand, 12863119 - 12863076
Alignment:
Q  100 acaactcaaaccctaaaaacattaaattttttaaatcataaaat 143  Q
    |||||||||||||||||||| |||||||||||||||||||||||    
T  12863119 acaactcaaaccctaaaaacgttaaattttttaaatcataaaat 12863076  T

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