View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5360_low_9 (Length: 242)

Name: NF5360_low_9
Description: NF5360
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5360_low_9
NF5360_low_9
[»] chr6 (35 HSPs)
chr6 (1-226)||(27074231-27074456)
chr6 (1-197)||(26962086-26962282)
chr6 (5-138)||(26952597-26952730)
chr6 (27-140)||(26805536-26805649)
chr6 (2-114)||(26887781-26887893)
chr6 (5-131)||(27715542-27715668)
chr6 (48-132)||(26851563-26851647)
chr6 (52-140)||(27695603-27695691)
chr6 (27-122)||(27590180-27590275)
chr6 (1-140)||(27681945-27682084)
chr6 (11-123)||(26826879-26826991)
chr6 (43-122)||(27674609-27674688)
chr6 (4-138)||(25491184-25491318)
chr6 (27-117)||(28789380-28789470)
chr6 (26-122)||(28795403-28795499)
chr6 (48-107)||(28246415-28246474)
chr6 (52-140)||(27608143-27608231)
chr6 (48-102)||(26058948-26059002)
chr6 (48-102)||(26078918-26078972)
chr6 (1-122)||(26638392-26638516)
chr6 (1-122)||(26744358-26744482)
chr6 (49-107)||(28328652-28328710)
chr6 (49-107)||(28506288-28506346)
chr6 (78-131)||(26649540-26649593)
chr6 (78-131)||(26755508-26755561)
chr6 (52-184)||(26659014-26659146)
chr6 (52-184)||(26764985-26765117)
chr6 (1-117)||(26876548-26876664)
chr6 (48-107)||(28525285-28525344)
chr6 (48-102)||(25486399-25486453)
chr6 (48-102)||(25548009-25548063)
chr6 (48-102)||(25582736-25582790)
chr6 (43-132)||(25077043-25077132)
chr6 (43-122)||(26626159-26626241)
chr6 (43-122)||(26732136-26732218)
[»] scaffold0349 (1 HSPs)
scaffold0349 (5-131)||(16277-16403)
[»] chr1 (1 HSPs)
chr1 (27-117)||(265381-265471)
[»] chr2 (1 HSPs)
chr2 (48-125)||(17990184-17990261)
[»] scaffold0277 (2 HSPs)
scaffold0277 (26-117)||(1763-1854)
scaffold0277 (26-117)||(10729-10820)
[»] scaffold0419 (1 HSPs)
scaffold0419 (27-117)||(10530-10620)
[»] scaffold0038 (1 HSPs)
scaffold0038 (48-107)||(46577-46636)
[»] chr8 (1 HSPs)
chr8 (52-135)||(29270874-29270957)
[»] scaffold0019 (1 HSPs)
scaffold0019 (48-107)||(55294-55353)
[»] chr4 (2 HSPs)
chr4 (27-124)||(18696499-18696596)
chr4 (48-125)||(18721163-18721240)


Alignment Details
Target: chr6 (Bit Score: 206; Significance: 1e-113; HSPs: 35)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 27074231 - 27074456
Alignment:
Q  1 catgaggctggatgcacctggattagtttcccaaacagaagtgaggagattccagattggtttgagcaccgaagcatgggaaacacaatttctttttggt 100  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||    
T  27074231 catgaggctggatgcacctggattagtttcccaaatagaagtgaggagattccagattggtttgagcaccgaagcatgggaaatgcaatttctttttggt 27074330  T
Q  101 ttagtaaagagatccctactataacatgtatttttcttctcccgcgatcagcgttgtttccgaaattcaatttgtttctcaatgacaaagaaattgatat 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||    
T  27074331 ttagtaaagagatccctactataacatgtatttttcttctcccgcgatcagcattgtttccaaaattcaatttgtttctcaatgacaaagaaattgatat 27074430  T
Q  201 tcttgagtgttcatttttgtgtgatg 226  Q
    ||||||||||||||||||||||||||    
T  27074431 tcttgagtgttcatttttgtgtgatg 27074456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 113; E-Value: 2e-57
Query Start/End: Original strand, 1 - 197
Target Start/End: Original strand, 26962086 - 26962282
Alignment:
Q  1 catgaggctggatgcacctggattagtttcccaaacagaagtgaggagattccagattggtttgagcaccgaagcatgggaaacacaatttctttttggt 100  Q
    ||||||||||||||||||  |||||||||||||||| ||||||||| ||||||||||||||||||||||| ||| | |||| ||||| ||||||| ||||    
T  26962086 catgaggctggatgcaccaagattagtttcccaaacggaagtgaggggattccagattggtttgagcaccaaagaaagggagacacattttctttctggt 26962185  T
Q  101 ttagtaaagagatccctactataacatgtatttttcttctcccgcgatcagcgttgtttccgaaattcaatttgtttctcaatgacaaagaaattga 197  Q
     | | ||| ||||||||||||||||||||||||||||| ||||| |||| |||||| ||||| |||||||||||||| ||||||| |||||||||||    
T  26962186 atcgcaaaaagatccctactataacatgtatttttcttgtcccgggatctgcgttgcttccggaattcaatttgtttgtcaatgataaagaaattga 26962282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 5 - 138
Target Start/End: Original strand, 26952597 - 26952730
Alignment:
Q  5 aggctggatgcacctggattagtttcccaaacagaagtgaggagattccagattggtttgagcaccgaagcatgggaaacacaatttctttttggtttag 104  Q
    |||||||||||||||  |||  ||||||||||| ||  |||| ||||||||||||||||||||||| || || |||| ||||||||||||| |||||| |    
T  26952597 aggctggatgcacctatattcatttcccaaacaaaacagaggggattccagattggtttgagcaccaaaccaggggagacacaatttctttctggtttcg 26952696  T
Q  105 taaagagatccctactataacatgtatttttctt 138  Q
    || | |||||||| ||||||| ||||||||||||    
T  26952697 tagaaagatcccttctataacttgtatttttctt 26952730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 27 - 140
Target Start/End: Original strand, 26805536 - 26805649
Alignment:
Q  27 tttcccaaacagaagtgaggagattccagattggtttgagcaccgaagcatgggaaacacaatttctttttggtttagtaaagagatccctactataaca 126  Q
    |||||||||| |||  |||| ||| ||||||||||||||||||| ||||| ||||  |||||||||||| |||||| ||||||| |||||| ||||||||    
T  26805536 tttcccaaacggaacagaggggataccagattggtttgagcaccaaagcaagggacccacaatttctttctggtttcgtaaagaaatcccttctataaca 26805635  T
Q  127 tgtatttttcttct 140  Q
    ||||||||| ||||    
T  26805636 tgtatttttattct 26805649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 2 - 114
Target Start/End: Original strand, 26887781 - 26887893
Alignment:
Q  2 atgaggctggatgcacctggattagtttcccaaacagaagtgaggagattccagattggtttgagcaccgaagcatgggaaacacaatttctttttggtt 101  Q
    ||||||||||||||||   | ||  |||||||||| |||| |||| ||||||||||||||||||||||| ||||| |||| ||||| ||||||| |||||    
T  26887781 atgaggctggatgcacagagtttcttttcccaaacggaagagaggggattccagattggtttgagcaccaaagcaggggacacacactttctttctggtt 26887880  T
Q  102 tagtaaagagatc 114  Q
    | |||||||||||    
T  26887881 tcgtaaagagatc 26887893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 5 - 131
Target Start/End: Complemental strand, 27715668 - 27715542
Alignment:
Q  5 aggctggatgcacctggattagtttcccaaacagaagtgaggagattccagattggtttgagcaccgaagcatgggaaacacaatttctttttggtttag 104  Q
    |||||||||||||||  ||||  ||||||||| |||  || | ||| ||||||||||||||||||| ||||| ||||  |||||||||||| |||||| |    
T  27715668 aggctggatgcacctatattaaattcccaaacggaacagatgggataccagattggtttgagcaccaaagcaggggacccacaatttctttctggtttcg 27715569  T
Q  105 taaagagatccctactataacatgtat 131  Q
    |||||| |||||| ||||||| |||||    
T  27715568 taaagaaatcccttctataacttgtat 27715542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 48 - 132
Target Start/End: Original strand, 26851563 - 26851647
Alignment:
Q  48 gattccagattggtttgagcaccgaagcatgggaaacacaatttctttttggtttagtaaagagatccctactataacatgtatt 132  Q
    ||||||||||||||| ||||||| ||||| || |||||||||||| || |||||| ||||| |||||||| ||||||||||||||    
T  26851563 gattccagattggttcgagcaccaaagcagggaaaacacaatttccttctggtttcgtaaaaagatcccttctataacatgtatt 26851647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 52 - 140
Target Start/End: Complemental strand, 27695691 - 27695603
Alignment:
Q  52 ccagattggtttgagcaccgaagcatgggaaacacaatttctttttggtttagtaaagagatccctactataacatgtatttttcttct 140  Q
    ||||||||||||||||||| ||||| |||| ||||||||||||||||||||  |||||| |||||| ||||| | ||||||||| ||||    
T  27695691 ccagattggtttgagcaccaaagcaggggagacacaatttctttttggtttcataaagaaatcccttctatatcttgtatttttattct 27695603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 27 - 122
Target Start/End: Complemental strand, 27590275 - 27590180
Alignment:
Q  27 tttcccaaacagaagtgaggagattccagattggtttgagcaccgaagcatgggaaacacaatttctttttggtttagtaaagagatccctactat 122  Q
    |||||||||| |||  |||| ||| ||||||||||||||||||| ||||| |||| ||||||||||||| |||||| ||||||| |||||| ||||    
T  27590275 tttcccaaacggaacagaggggataccagattggtttgagcaccaaagcaggggagacacaatttctttctggtttcgtaaagaaatcccttctat 27590180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 140
Target Start/End: Original strand, 27681945 - 27682084
Alignment:
Q  1 catgaggctggatgcacctggattagtttcccaaacagaagtgaggagattccagattggtttgagcaccgaagcatgggaaacacaatttctttttggt 100  Q
    |||||||| |||||||||  ||||  |||||||||  |||| |||| ||| ||||||||||||||||||| ||||| ||||  || ||||||||| ||||    
T  27681945 catgaggcgggatgcaccaagatttatttcccaaatggaagagaggggataccagattggtttgagcaccaaagcaggggacccataatttctttctggt 27682044  T
Q  101 ttagtaaagagatccctactataacatgtatttttcttct 140  Q
    || ||||||| |||||| | ||||| ||||| ||| ||||    
T  27682045 ttcgtaaagaaatcccttcaataacttgtatatttattct 27682084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 11 - 123
Target Start/End: Original strand, 26826879 - 26826991
Alignment:
Q  11 gatgcacctggattagtttcccaaacagaagtgaggagattccagattggtttgagcaccgaagcatgggaaacacaatttctttttggtttagtaaaga 110  Q
    ||||||||  |||| |||| | ||||| |||||||| |||||||||| |||||||||||| |||||  ||| ||||||||||||| |||||| ||||| |    
T  26826879 gatgcaccaagatttgtttgctaaacaaaagtgaggggattccagatcggtttgagcaccaaagcagaggagacacaatttctttctggtttcgtaaaaa 26826978  T
Q  111 gatccctactata 123  Q
     |||||| |||||    
T  26826979 aatcccttctata 26826991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 43 - 122
Target Start/End: Complemental strand, 27674688 - 27674609
Alignment:
Q  43 gaggagattccagattggtttgagcaccgaagcatgggaaacacaatttctttttggtttagtaaagagatccctactat 122  Q
    |||| ||| ||||||||||||||||||| ||||| |||| ||||||||||||| |||||| ||||||| |||||| ||||    
T  27674688 gaggggataccagattggtttgagcaccaaagcaggggagacacaatttctttctggtttcgtaaagaaatcccttctat 27674609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 4 - 138
Target Start/End: Complemental strand, 25491318 - 25491184
Alignment:
Q  4 gaggctggatgcacctggattagtttcccaaacagaagtgaggagattccagattggtttgagcaccgaagcatgggaaacacaatttctttttggttta 103  Q
    |||||||||||||||  |||| |||| ||||||| ||||||||  |||||||||||||| ||||||| ||  | ||||   ||||||||||| ||||||     
T  25491318 gaggctggatgcaccgagatttgtttgccaaacacaagtgagggaattccagattggttcgagcaccaaattaggggacggacaatttctttctggtttt 25491219  T
Q  104 gtaaagagatccctactataacatgtatttttctt 138  Q
    ||||||| |||||| | ||||  |||||| |||||    
T  25491218 gtaaagaaatcccttcaataagttgtattgttctt 25491184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 27 - 117
Target Start/End: Original strand, 28789380 - 28789470
Alignment:
Q  27 tttcccaaacagaagtgaggagattccagattggtttgagcaccgaagcatgggaaacacaatttctttttggtttagtaaagagatccct 117  Q
    ||||||||||   ||||| | ||||||||||||||| ||||||| ||||| |||| ||||||||||||| |||||| ||||| ||||||||    
T  28789380 tttcccaaacttcagtgatgggattccagattggttcgagcaccaaagcaggggagacacaatttctttctggtttcgtaaaaagatccct 28789470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 26 - 122
Target Start/End: Original strand, 28795403 - 28795499
Alignment:
Q  26 gtttcccaaacagaagtgaggagattccagattggtttgagcaccgaagcatgggaaacacaatttctttttggtttagtaaagagatccctactat 122  Q
    |||||||||||   ||||| | ||||||||||||||| ||||||| ||||| |||| |||||||||| || |||||| ||||| |||||||| ||||    
T  28795403 gtttcccaaacttcagtgatgggattccagattggttcgagcaccaaagcaggggagacacaatttccttctggttttgtaaaaagatcccttctat 28795499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 48 - 107
Target Start/End: Original strand, 28246415 - 28246474
Alignment:
Q  48 gattccagattggtttgagcaccgaagcatgggaaacacaatttctttttggtttagtaa 107  Q
    |||||||||||||||||| |||| |||||||||| | |||||||||||||||||| ||||    
T  28246415 gattccagattggtttgatcaccaaagcatgggacatacaatttctttttggtttcgtaa 28246474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 52 - 140
Target Start/End: Complemental strand, 27608231 - 27608143
Alignment:
Q  52 ccagattggtttgagcaccgaagcatgggaaacacaatttctttttggtttagtaaagagatccctactataacatgtatttttcttct 140  Q
    ||||||||||||||||||| ||||| ||||  |||| ||||||| |||||| ||||||| |||||| | ||||| ||||| ||| ||||    
T  27608231 ccagattggtttgagcaccaaagcaggggactcacactttctttctggtttcgtaaagaaatcccttcaataacttgtatatttattct 27608143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 48 - 102
Target Start/End: Original strand, 26058948 - 26059002
Alignment:
Q  48 gattccagattggtttgagcaccgaagcatgggaaacacaatttctttttggttt 102  Q
    |||||| |||||||||||||||| ||||| |||| ||||||||||||| ||||||    
T  26058948 gattcctgattggtttgagcaccaaagcaggggagacacaatttctttctggttt 26059002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 48 - 102
Target Start/End: Original strand, 26078918 - 26078972
Alignment:
Q  48 gattccagattggtttgagcaccgaagcatgggaaacacaatttctttttggttt 102  Q
    |||||| |||||||||||||||| ||||| |||| ||||||||||||| ||||||    
T  26078918 gattcctgattggtttgagcaccaaagcaggggagacacaatttctttctggttt 26078972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 26638392 - 26638516
Alignment:
Q  1 catgaggctggatgcacctggattagtttcccaaacagaagtgaggagattccagattggtttgagcaccgaagcatgggaaa---cacaatttcttttt 97  Q
    ||||| |||||||||||    ||| |||| |||| |||||  |||||||||||||||||||| ||||| | ||||| |||| |   |||||||||||| |    
T  26638392 catgaagctggatgcactgatattcgttttccaaccagaacagaggagattccagattggttcgagcatcaaagcaggggacatggcacaatttctttct 26638491  T
Q  98 ggtttagtaaagagatccctactat 122  Q
    ||||| ||||| |||||||| ||||    
T  26638492 ggtttcgtaaaaagatcccttctat 26638516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 26744358 - 26744482
Alignment:
Q  1 catgaggctggatgcacctggattagtttcccaaacagaagtgaggagattccagattggtttgagcaccgaagcatgggaaa---cacaatttcttttt 97  Q
    ||||| |||||||||||    ||| |||| |||| |||||  |||||||||||||||||||| ||||| | ||||| |||| |   |||||||||||| |    
T  26744358 catgaagctggatgcactgatattcgttttccaaccagaacagaggagattccagattggttcgagcatcaaagcaggggacatggcacaatttctttct 26744457  T
Q  98 ggtttagtaaagagatccctactat 122  Q
    ||||| ||||| |||||||| ||||    
T  26744458 ggtttcgtaaaaagatcccttctat 26744482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 49 - 107
Target Start/End: Original strand, 28328652 - 28328710
Alignment:
Q  49 attccagattggtttgagcaccgaagcatgggaaacacaatttctttttggtttagtaa 107  Q
    |||||||| ||||||||||||| ||  |||||||| |||||||||||||||||| ||||    
T  28328652 attccagagtggtttgagcaccaaaatatgggaaatacaatttctttttggtttcgtaa 28328710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 49 - 107
Target Start/End: Original strand, 28506288 - 28506346
Alignment:
Q  49 attccagattggtttgagcaccgaagcatgggaaacacaatttctttttggtttagtaa 107  Q
    |||||||| ||||||||||||| ||  |||||||| |||||||||||||||||| ||||    
T  28506288 attccagagtggtttgagcaccaaaatatgggaaatacaatttctttttggtttcgtaa 28506346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 78 - 131
Target Start/End: Original strand, 26649540 - 26649593
Alignment:
Q  78 gggaaacacaatttctttttggtttagtaaagagatccctactataacatgtat 131  Q
    |||| |||||||||||||||||||| ||||| | |||||| |||||||||||||    
T  26649540 gggagacacaatttctttttggtttcgtaaaaatatcccttctataacatgtat 26649593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 78 - 131
Target Start/End: Original strand, 26755508 - 26755561
Alignment:
Q  78 gggaaacacaatttctttttggtttagtaaagagatccctactataacatgtat 131  Q
    |||| |||||||||||||||||||| ||||| | |||||| |||||||||||||    
T  26755508 gggagacacaatttctttttggtttcgtaaaaatatcccttctataacatgtat 26755561  T

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Target: chr6; HSP #26
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 52 - 184
Target Start/End: Original strand, 26659014 - 26659146
Alignment:
Q  52 ccagattggtttgagcaccgaagcatgggaaacacaatttctttttggtttagtaaagagatccctactataacatgtatttttcttctcccgcgatcag 151  Q
    ||||||||||| ||||||| || || |||| | ||| ||||||| |||||| ||||| |||||||| |||| |  |||||| ||||||| ||| ||||      
T  26659014 ccagattggttcgagcaccaaatcaggggacaaacagtttctttctggtttcgtaaaaagatcccttctattatttgtattcttcttcttccgggatcta 26659113  T
Q  152 cgttgtttccgaaattcaatttgtttctcaatg 184  Q
     | || |||| | ||||||||||||| ||||||    
T  26659114 agctgattccaagattcaatttgtttatcaatg 26659146  T

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Target: chr6; HSP #27
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 52 - 184
Target Start/End: Original strand, 26764985 - 26765117
Alignment:
Q  52 ccagattggtttgagcaccgaagcatgggaaacacaatttctttttggtttagtaaagagatccctactataacatgtatttttcttctcccgcgatcag 151  Q
    ||||||||||| ||||||| || || |||| | ||| ||||||| |||||| ||||| |||||||| |||| |  |||||| ||||||| ||| ||||      
T  26764985 ccagattggttcgagcaccaaatcaggggacaaacagtttctttctggtttcgtaaaaagatcccttctattatttgtattcttcttcttccgggatcta 26765084  T
Q  152 cgttgtttccgaaattcaatttgtttctcaatg 184  Q
     | || |||| | ||||||||||||| ||||||    
T  26765085 agctgattccaagattcaatttgtttatcaatg 26765117  T

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Target: chr6; HSP #28
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 26876548 - 26876664
Alignment:
Q  1 catgaggctggatgcacctggattagtttcccaaacagaagtgaggagattccagattggtttgagcaccgaagcatgggaaacacaatttctttttggt 100  Q
    |||||||||||||||||||  |||  | |||||||| |||  |||| ||||||||| |||||  | |||| || || |||| | ||||||||||| ||||    
T  26876548 catgaggctggatgcacctatattcttctcccaaacggaacagaggggattccagactggttccaacaccaaatcacgggacaaacaatttctttctggt 26876647  T
Q  101 ttagtaaagagatccct 117  Q
    || ||||| ||||||||    
T  26876648 ttcgtaaaaagatccct 26876664  T

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Target: chr6; HSP #29
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 48 - 107
Target Start/End: Original strand, 28525285 - 28525344
Alignment:
Q  48 gattccagattggtttgagcaccgaagcatgggaaacacaatttctttttggtttagtaa 107  Q
    ||||||||| |||||||| |||| || ||||||| | |||||||||||||||||| ||||    
T  28525285 gattccagagtggtttgatcaccaaaacatgggacatacaatttctttttggtttcgtaa 28525344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 102
Target Start/End: Original strand, 25486399 - 25486453
Alignment:
Q  48 gattccagattggtttgagcaccgaagcatgggaaacacaatttctttttggttt 102  Q
    |||||| |||||||||||||||| ||||| ||||  |||||||||||| ||||||    
T  25486399 gattcctgattggtttgagcaccaaagcaggggaggcacaatttctttctggttt 25486453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 102
Target Start/End: Original strand, 25548009 - 25548063
Alignment:
Q  48 gattccagattggtttgagcaccgaagcatgggaaacacaatttctttttggttt 102  Q
    |||||| |||||||||||||||| ||||| |||| | ||||||||||| ||||||    
T  25548009 gattcctgattggtttgagcaccaaagcaggggagagacaatttctttctggttt 25548063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 48 - 102
Target Start/End: Original strand, 25582736 - 25582790
Alignment:
Q  48 gattccagattggtttgagcaccgaagcatgggaaacacaatttctttttggttt 102  Q
    |||||| |||||||||||||||| ||||| |||| | ||||||||||| ||||||    
T  25582736 gattcctgattggtttgagcaccaaagcaggggagagacaatttctttctggttt 25582790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 43 - 132
Target Start/End: Original strand, 25077043 - 25077132
Alignment:
Q  43 gaggagattccagattggtttgagcaccgaagcatgggaaacacaatttctttttggtttagtaaagagatccctactataacatgtatt 132  Q
    |||| ||||||||||||||| ||||||| ||    |||| ||||||||||||| |||||| | ||| |||||||| |||| || ||||||    
T  25077043 gaggggattccagattggttcgagcaccaaatggagggagacacaatttctttctggtttcgcaaaaagatcccttctattacttgtatt 25077132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 122
Target Start/End: Original strand, 26626159 - 26626241
Alignment:
Q  43 gaggagattccagattggtttgagcaccgaagcatggga---aacacaatttctttttggtttagtaaagagatccctactat 122  Q
    |||| ||||||||||||||| ||||| | || || ||||   |||||||||||||| |||||| ||||| |||||||| ||||    
T  26626159 gaggggattccagattggttcgagcatcaaatcaggggacacaacacaatttctttctggtttcgtaaaaagatcccttctat 26626241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 43 - 122
Target Start/End: Original strand, 26732136 - 26732218
Alignment:
Q  43 gaggagattccagattggtttgagcaccgaagcatggga---aacacaatttctttttggtttagtaaagagatccctactat 122  Q
    |||| ||||||||||||||| ||||| | || || ||||   |||||||||||||| |||||| ||||| |||||||| ||||    
T  26732136 gaggggattccagattggttcgagcatcaaatcaggggacacaacacaatttctttctggtttcgtaaaaagatcccttctat 26732218  T

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Target: scaffold0349 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 5 - 131
Target Start/End: Original strand, 16277 - 16403
Alignment:
Q  5 aggctggatgcacctggattagtttcccaaacagaagtgaggagattccagattggtttgagcaccgaagcatgggaaacacaatttctttttggtttag 104  Q
    |||||||||||||||  ||||  ||||||||| |||  || | ||| ||||||||||||||||||| ||||| ||||  |||||||||||| |||||| |    
T  16277 aggctggatgcacctatattaaattcccaaacggaacagatgggataccagattggtttgagcaccaaagcaggggacccacaatttctttctggtttcg 16376  T
Q  105 taaagagatccctactataacatgtat 131  Q
    |||||| |||||| ||||||| |||||    
T  16377 taaagaaatcccttctataacttgtat 16403  T

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Target: chr1 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 27 - 117
Target Start/End: Complemental strand, 265471 - 265381
Alignment:
Q  27 tttcccaaacagaagtgaggagattccagattggtttgagcaccgaagcatgggaaacacaatttctttttggtttagtaaagagatccct 117  Q
    |||||||||| |||  |||| ||| ||||||||||||||||||| ||||| |||||||||||||||||| |||||| ||||| ||||||||    
T  265471 tttcccaaacggaacagaggggataccagattggtttgagcaccaaagcaagggaaacacaatttctttctggtttcgtaaaaagatccct 265381  T

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Target: chr2 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 48 - 125
Target Start/End: Complemental strand, 17990261 - 17990184
Alignment:
Q  48 gattccagattggtttgagcaccgaagcatgggaaacacaatttctttttggtttagtaaagagatccctactataac 125  Q
    ||||||||||||||||||||||| ||||| |||  ||||||||||||| |||||| ||||||| |||||| |||||||    
T  17990261 gattccagattggtttgagcaccaaagcagggggcacacaatttctttctggtttcgtaaagaaatcccttctataac 17990184  T

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Target: scaffold0277 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 26 - 117
Target Start/End: Complemental strand, 1854 - 1763
Alignment:
Q  26 gtttcccaaacagaagtgaggagattccagattggtttgagcaccgaagcatgggaaacacaatttctttttggtttagtaaagagatccct 117  Q
    |||||||||||   ||||| | ||||||||||||||| ||||||| ||||| |||| ||||||||||||| |||||| ||||| ||||||||    
T  1854 gtttcccaaacttcagtgatgggattccagattggttcgagcaccaaagcaggggagacacaatttctttctggtttcgtaaaaagatccct 1763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 26 - 117
Target Start/End: Complemental strand, 10820 - 10729
Alignment:
Q  26 gtttcccaaacagaagtgaggagattccagattggtttgagcaccgaagcatgggaaacacaatttctttttggtttagtaaagagatccct 117  Q
    |||||||||||   ||||| | ||||||||||||||| ||||||| ||||| |||| ||||||||||||| |||||| ||||| ||||||||    
T  10820 gtttcccaaacttcagtgatgggattccagattggttcgagcaccaaagcaggggagacacaatttctttctggtttcgtaaaaagatccct 10729  T

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Target: scaffold0419 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 27 - 117
Target Start/End: Original strand, 10530 - 10620
Alignment:
Q  27 tttcccaaacagaagtgaggagattccagattggtttgagcaccgaagcatgggaaacacaatttctttttggtttagtaaagagatccct 117  Q
    ||||||||||   ||||| | ||||||||||||||| ||||||| ||||| |||| ||||||||||||| |||||| ||||| ||||||||    
T  10530 tttcccaaacttcagtgatgggattccagattggttcgagcaccaaagcaggggagacacaatttctttctggtttcgtaaaaagatccct 10620  T

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Target: scaffold0038 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 48 - 107
Target Start/End: Original strand, 46577 - 46636
Alignment:
Q  48 gattccagattggtttgagcaccgaagcatgggaaacacaatttctttttggtttagtaa 107  Q
    |||||||||||||||||| |||| |||||||||| | |||||||||||||||||| ||||    
T  46577 gattccagattggtttgatcaccaaagcatgggacatacaatttctttttggtttcgtaa 46636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 52 - 135
Target Start/End: Complemental strand, 29270957 - 29270874
Alignment:
Q  52 ccagattggtttgagcaccgaagcatgggaaacacaatttctttttggtttagtaaagagatccctactataacatgtattttt 135  Q
    ||||||||||| || |||| ||||| ||||  |||||||||||| |||||| ||||||| |||||| |||| || |||||||||    
T  29270957 ccagattggttcgaacaccaaagcaggggacccacaatttctttctggtttcgtaaagaaatcccttctattacttgtattttt 29270874  T

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Target: scaffold0019 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 48 - 107
Target Start/End: Complemental strand, 55353 - 55294
Alignment:
Q  48 gattccagattggtttgagcaccgaagcatgggaaacacaatttctttttggtttagtaa 107  Q
    ||||||||| ||||||||||||| || ||||||| | || ||||||||||||||| ||||    
T  55353 gattccagagtggtttgagcaccaaaacatgggacatacgatttctttttggtttcgtaa 55294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 27 - 124
Target Start/End: Complemental strand, 18696596 - 18696499
Alignment:
Q  27 tttcccaaacagaagtgaggagattccagattggtttgagcaccgaagcatgggaaacacaatttctttttggtttagtaaagagatccctactataa 124  Q
    |||||||||| |||  |||| ||||||||||||||| ||||| | ||||| |||  |  |||||||||| |||||  ||||| |||||||| ||||||    
T  18696596 tttcccaaacggaacagaggggattccagattggttcgagcatcaaagcaggggtcaatcaatttctttctggttccgtaaaaagatcccttctataa 18696499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 48 - 125
Target Start/End: Complemental strand, 18721240 - 18721163
Alignment:
Q  48 gattccagattggtttgagcaccgaagcatgggaaacacaatttctttttggtttagtaaagagatccctactataac 125  Q
    ||||||||||||||| ||||||| ||||| |||  |  |||||||||| |||||  ||||| |||||||| |||||||    
T  18721240 gattccagattggttcgagcaccaaagcaggggtcattcaatttctttctggttctgtaaaaagatcccttctataac 18721163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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