View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5361_high_1 (Length: 339)

Name: NF5361_high_1
Description: NF5361
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5361_high_1
NF5361_high_1
[»] chr8 (1 HSPs)
chr8 (18-335)||(29272101-29272418)
[»] chr6 (45 HSPs)
chr6 (18-335)||(27609383-27609700)
chr6 (18-335)||(27716762-27717079)
chr6 (18-335)||(27696852-27697169)
chr6 (18-335)||(27680564-27680881)
chr6 (161-335)||(27704669-27704843)
chr6 (22-335)||(31286158-31286468)
chr6 (18-335)||(27675870-27676194)
chr6 (141-335)||(27603080-27603275)
chr6 (141-335)||(27591401-27591595)
chr6 (155-325)||(28787865-28788035)
chr6 (155-325)||(28793986-28794156)
chr6 (190-335)||(26624864-26625009)
chr6 (198-335)||(26648072-26648209)
chr6 (190-335)||(26730841-26730986)
chr6 (198-335)||(26754040-26754177)
chr6 (22-335)||(26804060-26804382)
chr6 (22-92)||(26648278-26648348)
chr6 (22-92)||(26754246-26754316)
chr6 (18-265)||(27425872-27426125)
chr6 (33-92)||(25491578-25491637)
chr6 (239-315)||(26813171-26813247)
chr6 (18-86)||(28788089-28788157)
chr6 (18-86)||(28794210-28794278)
chr6 (22-128)||(26625031-26625139)
chr6 (22-128)||(26731008-26731116)
chr6 (188-325)||(26863183-26863320)
chr6 (268-335)||(26885684-26885751)
chr6 (49-92)||(26960920-26960963)
chr6 (49-92)||(27663492-27663535)
chr6 (192-286)||(27529741-27529838)
chr6 (55-92)||(26813339-26813376)
chr6 (55-92)||(26951591-26951628)
chr6 (55-92)||(26979230-26979267)
chr6 (22-87)||(27704511-27704576)
chr6 (49-92)||(26637410-26637453)
chr6 (49-92)||(26743376-26743419)
chr6 (219-335)||(27663671-27663783)
chr6 (233-335)||(25491785-25491887)
chr6 (18-92)||(27591273-27591347)
chr6 (233-333)||(26960729-26960825)
chr6 (50-92)||(26885915-26885957)
chr6 (50-92)||(27216300-27216342)
chr6 (55-92)||(26863439-26863476)
chr6 (49-89)||(26657820-26657860)
chr6 (49-89)||(26763791-26763831)
[»] scaffold0349 (1 HSPs)
scaffold0349 (174-335)||(1957-2119)
[»] chr1 (2 HSPs)
chr1 (34-335)||(266634-266929)
chr1 (55-92)||(28125981-28126018)
[»] scaffold1870 (2 HSPs)
scaffold1870 (155-325)||(393-563)
scaffold1870 (49-86)||(616-653)
[»] scaffold0419 (2 HSPs)
scaffold0419 (156-325)||(9111-9280)
scaffold0419 (49-86)||(9335-9372)
[»] scaffold0277 (4 HSPs)
scaffold0277 (155-324)||(3103-3272)
scaffold0277 (155-324)||(12066-12235)
scaffold0277 (49-86)||(3014-3051)
scaffold0277 (49-86)||(11977-12014)
[»] scaffold0003 (1 HSPs)
scaffold0003 (18-265)||(61238-61491)
[»] chr4 (7 HSPs)
chr4 (18-88)||(18075613-18075683)
chr4 (190-265)||(18075430-18075506)
chr4 (49-90)||(18653835-18653876)
chr4 (49-90)||(18677917-18677958)
chr4 (49-90)||(18687971-18688012)
chr4 (49-90)||(18722431-18722472)
chr4 (49-90)||(18729853-18729894)
[»] chr2 (1 HSPs)
chr2 (29-84)||(17991485-17991540)


Alignment Details
Target: chr8 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 18 - 335
Target Start/End: Original strand, 29272101 - 29272418
Alignment:
Q  18 tcttgtctatcacggattccatggaatggagattcatatatatcatttcaattttactagttcccttttaacaaagnnnnnnncatgaatcaaccacaat 117  Q
    ||||||||||||| ||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||    
T  29272101 tcttgtctatcacagattctatggaatggagattcgtatatatcatttcaattttactagttcccttttaacaaagaaaaaaatatgaatcaaccacaat 29272200  T
Q  118 aaaaataagatgtacaaatattaacatgcaattgagtgaaaagaaatgctagtatcagatgataatatttagtccaaaaagagcaaagtcgtattaaaac 217  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29272201 aaaaataagatgtacaaatattaacatgcaattgagtgaaaataaatgctagtatcagatgataatatttagtccaaaaagagcaaagtcgtattaaaac 29272300  T
Q  218 taaataacaaaatgatcatatatatcaatcttactcacagtgttttctcttaaaacacgaactatatcatcctggcagcataacctacttctttctccag 317  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  29272301 taaataacaaaatgatcatagatatcaatcttactcacagtgttttctcttaaaacacgaactagatcatcctggcagcataacctacttctttctccag 29272400  T
Q  318 gctctttaattgattctt 335  Q
    ||||||||||||||||||    
T  29272401 gctctttaattgattctt 29272418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 257; Significance: 1e-143; HSPs: 45)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 18 - 335
Target Start/End: Original strand, 27609383 - 27609700
Alignment:
Q  18 tcttgtctatcacggattccatggaatggagattcatatatatcatttcaattttactagttcccttttaacaaagnnnnnnncatgaatcaaccacaat 117  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||    
T  27609383 tcttgtctatcacggattccatggagtggagattcatatatatcatttcaattttactagttcccttttaacaaagataaaaacatgaatcaaccacaat 27609482  T
Q  118 aaaaataagatgtacaaatattaacatgcaattgagtgaaaagaaatgctagtatcagatgataatatttagtccaaaaagagcaaagtcgtattaaaac 217  Q
    ||||||||||  || | ||||||||||| |||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||    
T  27609483 aaaaataagacatagatatattaacatgtaattgagtgaaaagaaatgctagtatcagatgatcatatttagtgcaaaaagagcaaagtcgtattaaaac 27609582  T
Q  218 taaataacaaaatgatcatatatatcaatcttactcacagtgttttctcttaaaacacgaactatatcatcctggcagcataacctacttctttctccag 317  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  27609583 taaataacaaaatgatcatagatatcaatcttactcacagtgttttctcttaaaacacgaactatatcatcctgacagcataacctacttctttctccag 27609682  T
Q  318 gctctttaattgattctt 335  Q
    ||||||||||||||||||    
T  27609683 gctctttaattgattctt 27609700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 18 - 335
Target Start/End: Original strand, 27716762 - 27717079
Alignment:
Q  18 tcttgtctatcacggattccatggaatggagattcatatatatcatttcaattttactagttcccttttaacaaagnnnnnnncatgaatcaaccacaat 117  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||    
T  27716762 tcttgtctatcacggattccatggagtggagattcatatatatcatttcaattttactagttcccttttaacaaagataaaaacatgaatcaaccacaat 27716861  T
Q  118 aaaaataagatgtacaaatattaacatgcaattgagtgaaaagaaatgctagtatcagatgataatatttagtccaaaaagagcaaagtcgtattaaaac 217  Q
    ||||||||||| || ||||||||||||| ||||||||||||||||||||| || | ||||||| ||||||||| ||||||||||||||| ||||||||||    
T  27716862 aaaaataagatatagaaatattaacatgtaattgagtgaaaagaaatgctcgttttagatgatcatatttagttcaaaaagagcaaagttgtattaaaac 27716961  T
Q  218 taaataacaaaatgatcatatatatcaatcttactcacagtgttttctcttaaaacacgaactatatcatcctggcagcataacctacttctttctccag 317  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  27716962 taaataacaaaatgatcatagatatcaatcttactcacagtgttttctcttaaaacacgaactatatcatcctgacagcataacctacttctttctccag 27717061  T
Q  318 gctctttaattgattctt 335  Q
    ||||||||||||||||||    
T  27717062 gctctttaattgattctt 27717079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 18 - 335
Target Start/End: Original strand, 27696852 - 27697169
Alignment:
Q  18 tcttgtctatcacggattccatggaatggagattcatatatatcatttcaattttactagttcccttttaacaaagnnnnnnncatgaatcaaccacaat 117  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||    
T  27696852 tcttgtctatcacggattccatggagtggagattcatatatatcatttcaattttactagttcccttttaacaaagataaaaacatgaatcaaccacaat 27696951  T
Q  118 aaaaataagatgtacaaatattaacatgcaattgagtgaaaagaaatgctagtatcagatgataatatttagtccaaaaagagcaaagtcgtattaaaac 217  Q
    ||||||||||| || ||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||| |||| |||||||||||||||||||||    
T  27696952 aaaaataagatatagaaatattaacatgtaattgagtgaaaagaaatgctagtatcagatgatcatatttagtgcaaatagagcaaagtcgtattaaaac 27697051  T
Q  218 taaataacaaaatgatcatatatatcaatcttactcacagtgttttctcttaaaacacgaactatatcatcctggcagcataacctacttctttctccag 317  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||  |||||||||||| |||||||||||||||||||||||||    
T  27697052 taaataacaaaatgatcatagatatcaatcttactcacagtgttttctcttaaaacccgagttatatcatcctgacagcataacctacttctttctccag 27697151  T
Q  318 gctctttaattgattctt 335  Q
    |||||||| |||||||||    
T  27697152 gctctttagttgattctt 27697169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 18 - 335
Target Start/End: Complemental strand, 27680881 - 27680564
Alignment:
Q  18 tcttgtctatcacggattccatggaatggagattcatatatatcatttcaattttactagttcccttttaacaaagnnnnnnncatgaatcaaccacaat 117  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||    
T  27680881 tcttgtctatcacggattccatggagtggagattcatatatatcatttcaattttactagttcccttttaacaaagataaaaacatgaatcaaccacaat 27680782  T
Q  118 aaaaataagatgtacaaatattaacatgcaattgagtgaaaagaaatgctagtatcagatgataatatttagtccaaaaagagcaaagtcgtattaaaac 217  Q
    ||||||||||  || | ||||||||||| |||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||    
T  27680781 aaaaataagacatagatatattaacatgtaattgagtgaaaagaaatgctagtatcagatgatcatatttagtgcaaaaagagcaaagtcgtattaaaac 27680682  T
Q  218 taaataacaaaatgatcatatatatcaatcttactcacagtgttttctcttaaaacacgaactatatcatcctggcagcataacctacttctttctccag 317  Q
    |||||||||||||||||||| ||||||||| ||||||||||||||||| |||||||| ||| |||||| || || |  ||||||||||||| ||||||||    
T  27680681 taaataacaaaatgatcatagatatcaatcatactcacagtgttttcttttaaaacatgaattatatcttcttgacgccataacctacttcgttctccag 27680582  T
Q  318 gctctttaattgattctt 335  Q
    ||||||||  ||||||||    
T  27680581 gctctttaggtgattctt 27680564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 161 - 335
Target Start/End: Original strand, 27704669 - 27704843
Alignment:
Q  161 aaatgctagtatcagatgataatatttagtccaaaaagagcaaagtcgtattaaaactaaataacaaaatgatcatatatatcaatcttactcacagtgt 260  Q
    |||| ||||||| ||||| | |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  27704669 aaatactagtatgagatggtcatatttagtccaaaaagagcaaagtcatattaaaactaaataacaaaatgatcatagatatcaatcttactcacagtgt 27704768  T
Q  261 tttctcttaaaacacgaactatatcatcctggcagcataacctacttctttctccaggctctttaattgattctt 335  Q
    ||||| |||| |||  |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  27704769 tttcttttaagacattaactatatcatcatggcagcataacctacttctttctccaggctctttaattgattctt 27704843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 22 - 335
Target Start/End: Complemental strand, 31286468 - 31286158
Alignment:
Q  22 gtctatcacggattccatggaatggagattcatatatatcatttcaattttactagttcccttttaacaaagnnnnnnn------catgaatcaaccaca 115  Q
    |||||| |||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||              ||| |||||||||||    
T  31286468 gtctattacggattccatggagtggaaattcatatatatcatttcaattttactagttcccttttaacaaaaaaaaaaaaaagaacataaatcaaccaca 31286369  T
Q  116 ataaaaataagatgtacaaatattaacatgcaattgagtgaaaagaaatgctagtatcagatgataatatttagtccaaaaagagcaaagtcgtattaaa 215  Q
    ||||||||||||| |  | | ||| ||||| |||| ||| |||| |||| ||||||| ||||| | |||         |||||||||||||||| |||||    
T  31286368 ataaaaataagatatggagaaatttacatgtaattaagtaaaaataaatactagtatgagatggtcata---------aaaagagcaaagtcgttttaaa 31286278  T
Q  216 actaaataacaaaatgatcatatatatcaatcttactcacagtgttttctcttaaaacacgaactatatcatcctggcagcataacctacttctttctcc 315  Q
    ||||||||||||| ||| |||| ||||||||||||||||||||||||||  ||||| || ||||||||||||| || || |||| |||||||||||||||    
T  31286277 actaaataacaaattgaacatagatatcaatcttactcacagtgttttcatttaaagcatgaactatatcatcttgacaccatagcctacttctttctcc 31286178  T
Q  316 aggctctttaattgattctt 335  Q
     |||||||||  ||||||||    
T  31286177 tggctctttaggtgattctt 31286158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 18 - 335
Target Start/End: Original strand, 27675870 - 27676194
Alignment:
Q  18 tcttgtctatcacggattccatggaatggagattcatatatatcatttcaattttactagttcccttttaacaaagnnnnnnnca-----tgaatcaacc 112  Q
    |||||||||| |||||||||||||| || | ||||||| ||||||||||| |||||| |||||||||||||||||         |     || |||||||    
T  27675870 tcttgtctattacggattccatggagtgcaaattcatacatatcatttcagttttaccagttcccttttaacaaaaataaaaataaaaaatgcatcaacc 27675969  T
Q  113 acaataaaaataagatgtacaaatattaacatgcaattgagtg--aaaagaaatgctagtatcagatgataatatttagtccaaaaagagcaaagtcgta 210  Q
    |||||||||||    |  | | | ||| ||||| |||| ||||  |||| |||| ||| ||| ||||| | ||||||||||||||| ||||||| | |||    
T  27675970 acaataaaaatcttttacagagaaatttacatgtaattaagtggaaaaaaaaatactaatatgagatggtcatatttagtccaaaatgagcaaaattgta 27676069  T
Q  211 ttaaaactaaataacaaaatgatcatatatatcaatcttactcacagtgttttctcttaaaacacgaactatatcatcctggcagcataacctacttctt 310  Q
    |||||||||||||||||| ||| |||| ||||||||||||||||||||||||||| |||||||| ||||||||||||| ||  | |||||||| ||||||    
T  27676070 ttaaaactaaataacaaattgaacatagatatcaatcttactcacagtgttttctgttaaaacatgaactatatcatcttgagaccataacctgcttctt 27676169  T
Q  311 tctccaggctctttaattgattctt 335  Q
    |||||||||||||||  ||||||||    
T  27676170 tctccaggctctttaggtgattctt 27676194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 141 - 335
Target Start/End: Original strand, 27603080 - 27603275
Alignment:
Q  141 acatgcaattgagtgaaaagaaatgctagtatcagatgataatatttagtccaaaaagagcaaa-gtcgtattaaaactaaataacaaaatgatcatata 239  Q
    ||||| |||| |||| ||| ||||  |||||| ||||||| |||||||||||||||||| |||| ||| |||||||||||||||||||| ||||  ||||    
T  27603080 acatgtaattaagtggaaaaaaataatagtatgagatgatcatatttagtccaaaaagaccaaaagtcatattaaaactaaataacaaattgatattata 27603179  T
Q  240 tatcaatcttactcacagtgttttctcttaaaacacgaactatatcatcctggcagcataacctacttctttctccaggctctttaattgattctt 335  Q
    |||||||||||||||||||||||||| ||| |||| |||||||||| || || || ||||||||||||||||||||||||||||||  ||||||||    
T  27603180 tatcaatcttactcacagtgttttctgttagaacatgaactatatcgtcttgacaccataacctacttctttctccaggctctttaggtgattctt 27603275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 141 - 335
Target Start/End: Original strand, 27591401 - 27591595
Alignment:
Q  141 acatgcaattgagtgaaaagaaatgctagtatcagatgataatatttagtccaaaaagagcaaagtcgtattaaaactaaataacaaaatgatcatatat 240  Q
    ||||| |||| |||| ||| | || ||||||| ||||| | ||||||||||||||| ||||||||| ||||||||||||||||||||| ||| |||| ||    
T  27591401 acatgtaattaagtggaaaaatatactagtatgagatggtcatatttagtccaaaatgagcaaagttgtattaaaactaaataacaaattgaacatagat 27591500  T
Q  241 atcaatcttactcacagtgttttctcttaaaacacgaactatatcatcctggcagcataacctacttctttctccaggctctttaattgattctt 335  Q
    ||||||||||| ||||||||||||| |||||||| ||||||||||||| ||  | |||||||| |||||||||||||||||||||  ||||||||    
T  27591501 atcaatcttacgcacagtgttttcttttaaaacatgaactatatcatcttgagaccataacctgcttctttctccaggctctttaggtgattctt 27591595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 155 - 325
Target Start/End: Complemental strand, 28788035 - 28787865
Alignment:
Q  155 gaaaagaaatgctagtatcagatgataatatttagtccaaaaagagcaaagtcgtattaaaactaaataacaaaatgatcatatatatcaatcttactca 254  Q
    ||||| |||| ||||||| ||||| | |||||||||||||||||||||||||||||| |||| ||||||||||| ||| |||| ||||||||| ||||||    
T  28788035 gaaaacaaatactagtatgagatggtcatatttagtccaaaaagagcaaagtcgtatcaaaattaaataacaaattgaacataaatatcaatcatactca 28787936  T
Q  255 cagtgttttctcttaaaacacgaactatatcatcctggcagcataacctacttctttctccaggctcttta 325  Q
    | ||||||||| ||||||||  |||||||||||| || || ||||||||||||||||||||||||||||||    
T  28787935 cggtgttttcttttaaaacattaactatatcatcttgacaccataacctacttctttctccaggctcttta 28787865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 155 - 325
Target Start/End: Complemental strand, 28794156 - 28793986
Alignment:
Q  155 gaaaagaaatgctagtatcagatgataatatttagtccaaaaagagcaaagtcgtattaaaactaaataacaaaatgatcatatatatcaatcttactca 254  Q
    ||||| |||| ||||||| ||||| | |||||||||||||||||||||||||||||| |||| ||||||||||| ||| |||| ||||||||| ||||||    
T  28794156 gaaaacaaatactagtatgagatggtcatatttagtccaaaaagagcaaagtcgtatcaaaattaaataacaaattgaacataaatatcaatcatactca 28794057  T
Q  255 cagtgttttctcttaaaacacgaactatatcatcctggcagcataacctacttctttctccaggctcttta 325  Q
    | ||||||||| ||||||||  |||||||||||| || || ||||||||||||||||||||||||||||||    
T  28794056 cggtgttttcttttaaaacattaactatatcatcttgacaccataacctacttctttctccaggctcttta 28793986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 190 - 335
Target Start/End: Complemental strand, 26625009 - 26624864
Alignment:
Q  190 tccaaaaagagcaaagtcgtattaaaactaaataacaaaatgatcatatatatcaatcttactcacagtgttttctcttaaaacacgaactatatcatcc 289  Q
    ||||||||||||||||| ||||||||||||||||| ||| |||||||| |||||||||||||||||| |||||||| |||||||| ||| |||||||||     
T  26625009 tccaaaaagagcaaagtagtattaaaactaaataataaattgatcatagatatcaatcttactcacactgttttcttttaaaacatgaaatatatcatct 26624910  T
Q  290 tggcagcataacctacttctttctccaggctctttaattgattctt 335  Q
    || || ||||| ||||||| ||||||||||||||||  ||||||||    
T  26624909 tgacaccataatctacttcgttctccaggctctttaggtgattctt 26624864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 198 - 335
Target Start/End: Complemental strand, 26648209 - 26648072
Alignment:
Q  198 gagcaaagtcgtattaaaactaaataacaaaatgatcatatatatcaatcttactcacagtgttttctcttaaaacacgaactatatcatcctggcagca 297  Q
    ||||||||||||||||||||||||||||||| |||||||| |||| |||||||||||||||||||||| |||||||| ||||||| ||||| || || ||    
T  26648209 gagcaaagtcgtattaaaactaaataacaaattgatcatagatattaatcttactcacagtgttttcttttaaaacatgaactatttcatcttgacacca 26648110  T
Q  298 taacctacttctttctccaggctctttaattgattctt 335  Q
    ||||||||||  ||||||||||||||||  ||||||||    
T  26648109 taacctactttgttctccaggctctttacgtgattctt 26648072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 190 - 335
Target Start/End: Complemental strand, 26730986 - 26730841
Alignment:
Q  190 tccaaaaagagcaaagtcgtattaaaactaaataacaaaatgatcatatatatcaatcttactcacagtgttttctcttaaaacacgaactatatcatcc 289  Q
    ||||||||||||||||| ||||||||||||||||| ||| |||||||| |||||||||||||||||| |||||||| |||||||| ||| |||||||||     
T  26730986 tccaaaaagagcaaagtagtattaaaactaaataataaattgatcatagatatcaatcttactcacactgttttcttttaaaacatgaaatatatcatct 26730887  T
Q  290 tggcagcataacctacttctttctccaggctctttaattgattctt 335  Q
    || || ||||| ||||||| ||||||||||||||||  ||||||||    
T  26730886 tgacaccataatctacttcgttctccaggctctttaggtgattctt 26730841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 86; E-Value: 4e-41
Query Start/End: Original strand, 198 - 335
Target Start/End: Complemental strand, 26754177 - 26754040
Alignment:
Q  198 gagcaaagtcgtattaaaactaaataacaaaatgatcatatatatcaatcttactcacagtgttttctcttaaaacacgaactatatcatcctggcagca 297  Q
    ||||||||||||||||||||||||||||||| |||||||| |||| |||||||||||||||||||||| |||||||| ||||||| ||||| || || ||    
T  26754177 gagcaaagtcgtattaaaactaaataacaaattgatcatagatattaatcttactcacagtgttttcttttaaaacatgaactatttcatcttgacacca 26754078  T
Q  298 taacctacttctttctccaggctctttaattgattctt 335  Q
    ||||||||||  ||||||||||||||||  ||||||||    
T  26754077 taacctactttgttctccaggctctttacgtgattctt 26754040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 22 - 335
Target Start/End: Complemental strand, 26804382 - 26804060
Alignment:
Q  22 gtctatcacggattccatggaatggagattcatatatatcatttcaattttactagttcccttttaaca---------aagnnnnnnncatgaatcaacc 112  Q
    |||||| |||||||||||||| |||| |||||||| |||||||||||||||||||||||||||||||||         ||        ||| |||||| |    
T  26804382 gtctattacggattccatggagtggaaattcatatttatcatttcaattttactagttcccttttaacacaaaaaaaaaaaaaaataacat-aatcaatc 26804284  T
Q  113 acaataaaaataagatgtacaaatattaacatgcaattgagtgaaaagaaa-tgctagtatcagatgataatatttagtccaaaaagagcaaagtcgtat 211  Q
    ||||||| |||||||| || | | ||| | ||| |||| |||||||| ||| | ||||||| ||||| | |||| |||||| ||||  ||||||||||||    
T  26804283 acaataacaataagatatagagaaatttatatgtaattaagtgaaaaaaaaatactagtatgagatggtcatatgtagtcctaaaaatgcaaagtcgtat 26804184  T
Q  212 taaaactaaataacaaaatgatcatatatatcaatcttactcacagtgttttctcttaaaacacgaactatatcatcctggcagcataacctacttcttt 311  Q
      ||||||||||||||| ||| |||| |||||||||||||||||| |||||||| ||| |||| |||||||||| || || |  ||||||||||||| ||    
T  26804183 ctaaactaaataacaaattgaacataaatatcaatcttactcacaatgttttcttttataacatgaactatatcttcatgacgccataacctacttcgtt 26804084  T
Q  312 ctccaggctctttaattgattctt 335  Q
     | |||| ||||||  ||||||||    
T  26804083 tttcaggatctttaggtgattctt 26804060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 22 - 92
Target Start/End: Complemental strand, 26648348 - 26648278
Alignment:
Q  22 gtctatcacggattccatggaatggagattcatatatatcatttcaattttactagttcccttttaacaaa 92  Q
    |||||| |||||||||||||| |||| ||||||||||||||||||||||||||||||||||||| ||||||    
T  26648348 gtctattacggattccatggagtggaaattcatatatatcatttcaattttactagttccctttcaacaaa 26648278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 22 - 92
Target Start/End: Complemental strand, 26754316 - 26754246
Alignment:
Q  22 gtctatcacggattccatggaatggagattcatatatatcatttcaattttactagttcccttttaacaaa 92  Q
    |||||| |||||||||||||| |||| ||||||||||||||||||||||||||||||||||||| ||||||    
T  26754316 gtctattacggattccatggagtggaaattcatatatatcatttcaattttactagttccctttcaacaaa 26754246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 18 - 265
Target Start/End: Original strand, 27425872 - 27426125
Alignment:
Q  18 tcttgtctatcacggattccatggaatggagattcatatatatcatttcaattttactagttcccttttaac------aaagnnnnnnncatgaatcaac 111  Q
    |||||||||| ||||||||||| || || | ||||||||||||||||||||||||||| |||||||||||||      |||         ||||||||||    
T  27425872 tcttgtctattacggattccatagagtgcaaattcatatatatcatttcaattttactggttcccttttaacgaaaaaaaaaaaaaaaagatgaatcaac 27425971  T
Q  112 cacaataaaaataagatgtacaaatattaacatgcaattgagtgaaaagaaatgctagtatcagatgataatattta-gtccaaaaagagcaaagtcgta 210  Q
    ||||||| ||||||||  || | | ||| |  || |||| | ||||||||| |  |||||||||||| |  |||  |  |||||||||||||||||| |     
T  27425972 cacaatacaaataaga--tagagaaatttatgtgtaattaactgaaaagaattagtagtatcagatgcttgtatacatatccaaaaagagcaaagtcatg 27426069  T
Q  211 ttaaaa-ctaaataacaaaatgatcatatatatcaatcttactcacagtgttttct 265  Q
    |||||| |||||||||||| || || |  |||||||||||||||||||||||||||    
T  27426070 ttaaaagctaaataacaaattgttcctgcatatcaatcttactcacagtgttttct 27426125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 33 - 92
Target Start/End: Original strand, 25491578 - 25491637
Alignment:
Q  33 attccatggaatggagattcatatatatcatttcaattttactagttcccttttaacaaa 92  Q
    ||||||||||  ||| ||||||||||||||||||||||||||||||||||||||||||||    
T  25491578 attccatggaggggaaattcatatatatcatttcaattttactagttcccttttaacaaa 25491637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 239 - 315
Target Start/End: Complemental strand, 26813247 - 26813171
Alignment:
Q  239 atatcaatcttactcacagtgttttctcttaaaacacgaactatatcatcctggcagcataacctacttctttctcc 315  Q
    |||||||||||||||||| |||||||| |||||||| ||||||||||||| || || |||| |||||||| ||||||    
T  26813247 atatcaatcttactcacaatgttttcttttaaaacatgaactatatcatcttgacaccatagcctacttcgttctcc 26813171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 18 - 86
Target Start/End: Complemental strand, 28788157 - 28788089
Alignment:
Q  18 tcttgtctatcacggattccatggaatggagattcatatatatcatttcaattttactagttccctttt 86  Q
    |||||||||| |||||||||  |||  ||| ||||||||||||||||||||||||||||||||||||||    
T  28788157 tcttgtctattacggattcctcggaggggaaattcatatatatcatttcaattttactagttccctttt 28788089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 18 - 86
Target Start/End: Complemental strand, 28794278 - 28794210
Alignment:
Q  18 tcttgtctatcacggattccatggaatggagattcatatatatcatttcaattttactagttccctttt 86  Q
    |||||||||| |||||||||  |||  ||| ||||||||||||||||||||||||||||||||||||||    
T  28794278 tcttgtctattacggattcctcggaggggaaattcatatatatcatttcaattttactagttccctttt 28794210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 22 - 128
Target Start/End: Complemental strand, 26625139 - 26625031
Alignment:
Q  22 gtctatcacggattccatggaatggagattcatatatatcatttcaattttactagttccc-ttttaac-aaagnnnnnnncatgaatcaaccacaataa 119  Q
    |||||| ||||||||||| ||  | | |||||||||||||||||||||||||||||||||| ||||||| |||        |||||||||||||||||||    
T  26625139 gtctattacggattccatagagggaaaattcatatatatcatttcaattttactagttccctttttaacaaaaaagaaaaacatgaatcaaccacaataa 26625040  T
Q  120 aaataagat 128  Q
    |||||||||    
T  26625039 aaataagat 26625031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 22 - 128
Target Start/End: Complemental strand, 26731116 - 26731008
Alignment:
Q  22 gtctatcacggattccatggaatggagattcatatatatcatttcaattttactagttccc-ttttaac-aaagnnnnnnncatgaatcaaccacaataa 119  Q
    |||||| ||||||||||| ||  | | |||||||||||||||||||||||||||||||||| ||||||| |||        |||||||||||||||||||    
T  26731116 gtctattacggattccatagagggaaaattcatatatatcatttcaattttactagttccctttttaacaaaaaagaaaaacatgaatcaaccacaataa 26731017  T
Q  120 aaataagat 128  Q
    |||||||||    
T  26731016 aaataagat 26731008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 188 - 325
Target Start/End: Complemental strand, 26863320 - 26863183
Alignment:
Q  188 agtccaaaaagagcaaagtcgtattaaa-actaaataacaaaatgatcatatatatcaatcttactcacagtgttttctcttaaaacacgaactatatca 286  Q
    |||| |||| ||||||||| || ||||| ||||| ||||| | || ||||| |||||||||||||||||||||||||||  ||||||  | | |||||||    
T  26863320 agtctaaaacgagcaaagttgtgttaaagactaa-taacagattgttcataaatatcaatcttactcacagtgttttcttctaaaacgtggattatatca 26863222  T
Q  287 tcctggcagcataacctacttctttctccaggctcttta 325  Q
    || || || ||||||||||||| ||| || |||||||||    
T  26863221 tcatgacaccataacctacttcgttcacccggctcttta 26863183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 268 - 335
Target Start/End: Complemental strand, 26885751 - 26885684
Alignment:
Q  268 taaaacacgaactatatcatcctggcagcataacctacttctttctccaggctctttaattgattctt 335  Q
    ||||||| ||||||||||||| || || ||||||||||| | |||||||||||||||| |||||||||    
T  26885751 taaaacatgaactatatcatcgtgacaccataacctactacgttctccaggctctttacttgattctt 26885684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 49 - 92
Target Start/End: Complemental strand, 26960963 - 26960920
Alignment:
Q  49 attcatatatatcatttcaattttactagttcccttttaacaaa 92  Q
    ||||| ||||||||||||||||||||||||||||||||||||||    
T  26960963 attcaaatatatcatttcaattttactagttcccttttaacaaa 26960920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 49 - 92
Target Start/End: Original strand, 27663492 - 27663535
Alignment:
Q  49 attcatatatatcatttcaattttactagttcccttttaacaaa 92  Q
    ||||| ||||||||||||||||||||||||||||||||||||||    
T  27663492 attcagatatatcatttcaattttactagttcccttttaacaaa 27663535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 192 - 286
Target Start/End: Original strand, 27529741 - 27529838
Alignment:
Q  192 caaaaagagcaaagtcgtattaaaa-ctaaat--aacaaaatgatcatatatatcaatcttactcacagtgttttctcttaaaacacgaactatatca 286  Q
    |||||||||||| ||| | |||||| ||||||  |||||| || || || ||||||||||||||||||||||||| | |||||||| |||||||||||    
T  27529741 caaaaagagcaatgtcatgttaaaagctaaatttaacaaattgttcctagatatcaatcttactcacagtgtttttttttaaaacatgaactatatca 27529838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 55 - 92
Target Start/End: Complemental strand, 26813376 - 26813339
Alignment:
Q  55 atatatcatttcaattttactagttcccttttaacaaa 92  Q
    ||||||||||||||||||||||||||||||||||||||    
T  26813376 atatatcatttcaattttactagttcccttttaacaaa 26813339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 55 - 92
Target Start/End: Complemental strand, 26951628 - 26951591
Alignment:
Q  55 atatatcatttcaattttactagttcccttttaacaaa 92  Q
    ||||||||||||||||||||||||||||||||||||||    
T  26951628 atatatcatttcaattttactagttcccttttaacaaa 26951591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 55 - 92
Target Start/End: Complemental strand, 26979267 - 26979230
Alignment:
Q  55 atatatcatttcaattttactagttcccttttaacaaa 92  Q
    ||||||||||||||||||||||||||||||||||||||    
T  26979267 atatatcatttcaattttactagttcccttttaacaaa 26979230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 22 - 87
Target Start/End: Original strand, 27704511 - 27704576
Alignment:
Q  22 gtctatcacggattccatggaatggagattcatatatatcatttcaattttactagttccctttta 87  Q
    |||||| | |||||||||||| || | ||||||||| ||||||| |||||||||||||||||||||    
T  27704511 gtctattatggattccatggagtgaaaattcatatacatcatttgaattttactagttccctttta 27704576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 49 - 92
Target Start/End: Complemental strand, 26637453 - 26637410
Alignment:
Q  49 attcatatatatcatttcaattttactagttcccttttaacaaa 92  Q
    ||||| ||||||||||| ||||||||||||||||||||||||||    
T  26637453 attcagatatatcatttgaattttactagttcccttttaacaaa 26637410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 49 - 92
Target Start/End: Complemental strand, 26743419 - 26743376
Alignment:
Q  49 attcatatatatcatttcaattttactagttcccttttaacaaa 92  Q
    ||||| ||||||||||| ||||||||||||||||||||||||||    
T  26743419 attcagatatatcatttgaattttactagttcccttttaacaaa 26743376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 219 - 335
Target Start/End: Original strand, 27663671 - 27663783
Alignment:
Q  219 aaataacaaaatgatcatatatatcaatcttactcacagtgttttctcttaaaacacgaactatatcatcctggcagcataacctacttctttctccagg 318  Q
    |||||||||| || ||||| ||||||||||||||    ||||||| | |||||||| || |||||||||| || |  || |||||| | |  ||||||||    
T  27663671 aaataacaaattgttcatagatatcaatcttact----gtgttttgttttaaaacatgagctatatcatcatgacgccacaacctagtgcgctctccagg 27663766  T
Q  319 ctctttaattgattctt 335  Q
    |||||||||||||||||    
T  27663767 ctctttaattgattctt 27663783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 233 - 335
Target Start/End: Original strand, 25491785 - 25491887
Alignment:
Q  233 tcatatatatcaatcttactcacagtgttttctcttaaaacacgaactatatcatcctggcagcataacctacttctttctccaggctctttaattgatt 332  Q
    ||||| |||||||||||||| || |||||||||||||||||  |||| ||||||||  | || || |||||||| | ||||||||| || |||  |||||    
T  25491785 tcatagatatcaatcttacttaccgtgttttctcttaaaacttgaaccatatcatcgggacaccacaacctactacgttctccaggatcattacgtgatt 25491884  T
Q  333 ctt 335  Q
    |||    
T  25491885 ctt 25491887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #39
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 18 - 92
Target Start/End: Original strand, 27591273 - 27591347
Alignment:
Q  18 tcttgtctatcacggattccatggaatggagattcatatatatcatttcaattttactagttcccttttaacaaa 92  Q
    |||||||||| || |||||||| || || | ||||||| ||||||||||| |||||| |||||||| ||||||||    
T  27591273 tcttgtctattacagattccatagagtgcaaattcatacatatcatttcagttttaccagttccctgttaacaaa 27591347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #40
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 233 - 333
Target Start/End: Complemental strand, 26960825 - 26960729
Alignment:
Q  233 tcatatatatcaatcttactcacagtgttttctcttaaaacacgaactatatcatcctggcagcataacctacttctttctccaggctctttaattgatt 332  Q
    ||||||||||||||||||||     | ||||||  ||||||| |||||||||||||  | || || |||||||| | || ||||||||||||||||||||    
T  26960825 tcatatatatcaatcttactt----ttttttcttgtaaaacatgaactatatcatcacgacaccacaacctactgcgttttccaggctctttaattgatt 26960730  T

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Target: chr6; HSP #41
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 50 - 92
Target Start/End: Complemental strand, 26885957 - 26885915
Alignment:
Q  50 ttcatatatatcatttcaattttactagttcccttttaacaaa 92  Q
    |||| ||||||||||||||| || |||||||||||||||||||    
T  26885957 ttcagatatatcatttcaatgttgctagttcccttttaacaaa 26885915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #42
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 50 - 92
Target Start/End: Complemental strand, 27216342 - 27216300
Alignment:
Q  50 ttcatatatatcatttcaattttactagttcccttttaacaaa 92  Q
    |||| |||||||||||||||||| | |||||||||||||||||    
T  27216342 ttcaaatatatcatttcaattttccaagttcccttttaacaaa 27216300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #43
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 55 - 92
Target Start/End: Complemental strand, 26863476 - 26863439
Alignment:
Q  55 atatatcatttcaattttactagttcccttttaacaaa 92  Q
    ||||| |||||||||||||||||||||||||| |||||    
T  26863476 atataccatttcaattttactagttcccttttcacaaa 26863439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #44
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 49 - 89
Target Start/End: Complemental strand, 26657860 - 26657820
Alignment:
Q  49 attcatatatatcatttcaattttactagttcccttttaac 89  Q
    ||||| ||||||||||||||| ||||| |||||||||||||    
T  26657860 attcagatatatcatttcaatgttactggttcccttttaac 26657820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #45
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 49 - 89
Target Start/End: Complemental strand, 26763831 - 26763791
Alignment:
Q  49 attcatatatatcatttcaattttactagttcccttttaac 89  Q
    ||||| ||||||||||||||| ||||| |||||||||||||    
T  26763831 attcagatatatcatttcaatgttactggttcccttttaac 26763791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349 (Bit Score: 135; Significance: 3e-70; HSPs: 1)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 174 - 335
Target Start/End: Original strand, 1957 - 2119
Alignment:
Q  174 agatgataatatttagtc-caaaaagagcaaagtcgtattaaaactaaataacaaaatgatcatatatatcaatcttactcacagtgttttctcttaaaa 272  Q
    ||||||| |||||||||  ||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  1957 agatgatcatatttagttacaaaaagagcaaagttgtattaaaactaaataacaaaatgatcatagatatcaatcttactcacagtgttttctcttaaaa 2056  T
Q  273 cacgaactatatcatcctggcagcataacctacttctttctccaggctctttaattgattctt 335  Q
    ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  2057 cacgaactatatcatcctgacagcataacctacttctttctccaggctctttaattgattctt 2119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 116; Significance: 6e-59; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 34 - 335
Target Start/End: Original strand, 266634 - 266929
Alignment:
Q  34 ttccatggaatggagattcatatatatcatttcaattttactagttcccttttaacaaagnnnnnnn-catgaatcaaccacaataaaaataagatgtac 132  Q
    |||||| || |||| |||||||||||||||||||| |||||||||||||||||||||||         ||||||||||| |||||||||||||||| ||     
T  266634 ttccatcgagtggaaattcatatatatcatttcaactttactagttcccttttaacaaaacaaaaaaacatgaatcaacaacaataaaaataagatatag 266733  T
Q  133 aaatattaacatgcaattgagtgaaaagaaatgctagtatcagatgataatatttagtccaaaaagagcaaagtcgtattaaaactaaataacaaaatga 232  Q
    | | | | ||||| || |       || |||| ||||||| ||||| | |||||| |||||||||||||||||||||||||||||||||||||||| |||    
T  266734 ataaacttacatgtaaat-------aataaatactagtatgagatggtcatattttgtccaaaaagagcaaagtcgtattaaaactaaataacaaattga 266826  T
Q  233 tcatatatatcaatcttactcacagtgttttctcttaaaacacgaactatatcatcctggcagcataacctacttctttctccaggctctttaattgatt 332  Q
    ||||  |||||||||||||||||||||||||   |||||||| ||||||||||||| || || ||||||||||||| ||||||||||||||||  |||||    
T  266827 tcattgatatcaatcttactcacagtgtttttatttaaaacatgaactatatcatcttgacaccataacctacttcgttctccaggctctttaggtgatt 266926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 55 - 92
Target Start/End: Original strand, 28125981 - 28126018
Alignment:
Q  55 atatatcatttcaattttactagttcccttttaacaaa 92  Q
    ||||||||||||||| |||| |||||||||||||||||    
T  28125981 atatatcatttcaatgttaccagttcccttttaacaaa 28126018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1870 (Bit Score: 103; Significance: 3e-51; HSPs: 2)
Name: scaffold1870
Description:

Target: scaffold1870; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 155 - 325
Target Start/End: Complemental strand, 563 - 393
Alignment:
Q  155 gaaaagaaatgctagtatcagatgataatatttagtccaaaaagagcaaagtcgtattaaaactaaataacaaaatgatcatatatatcaatcttactca 254  Q
    ||||| |||| ||||||| ||||| | |||||||||||||||||||||||||| ||| |||||||||||||||| ||| |||| ||||||||||||||||    
T  563 gaaaaaaaatactagtatgagatggtcatatttagtccaaaaagagcaaagtcatatcaaaactaaataacaaattgaacatagatatcaatcttactca 464  T
Q  255 cagtgttttctcttaaaacacgaactatatcatcctggcagcataacctacttctttctccaggctcttta 325  Q
    ||||||||||| ||||||||  |||||||||||| || || |||||||||||||||||||| |||||||||    
T  463 cagtgttttcttttaaaacattaactatatcatcttgacaccataacctacttctttctcctggctcttta 393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1870; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 49 - 86
Target Start/End: Complemental strand, 653 - 616
Alignment:
Q  49 attcatatatatcatttcaattttactagttccctttt 86  Q
    |||||||||||||||||||||||| |||||||||||||    
T  653 attcatatatatcatttcaatttttctagttccctttt 616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0419 (Bit Score: 98; Significance: 3e-48; HSPs: 2)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 156 - 325
Target Start/End: Complemental strand, 9280 - 9111
Alignment:
Q  156 aaaagaaatgctagtatcagatgataatatttagtccaaaaagagcaaagtcgtattaaaactaaataacaaaatgatcatatatatcaatcttactcac 255  Q
    |||| |||| ||| ||| ||||| | |||||||||||||||||||||||||| ||| |||||||||||||||| ||| |||| |||||||||||||||||    
T  9280 aaaaaaaatactaatatgagatggtcatatttagtccaaaaagagcaaagtcatatcaaaactaaataacaaattgaacatagatatcaatcttactcac 9181  T
Q  256 agtgttttctcttaaaacacgaactatatcatcctggcagcataacctacttctttctccaggctcttta 325  Q
    |||||||||| ||||||||  |||||||||||| || || |||||||||||||||||||| |||||||||    
T  9180 agtgttttcttttaaaacattaactatatcatcttgacaccataacctacttctttctcctggctcttta 9111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0419; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 49 - 86
Target Start/End: Complemental strand, 9372 - 9335
Alignment:
Q  49 attcatatatatcatttcaattttactagttccctttt 86  Q
    |||||||||||||||||||||||| |||||||||||||    
T  9372 attcatatatatcatttcaatttttctagttccctttt 9335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277 (Bit Score: 98; Significance: 3e-48; HSPs: 4)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 155 - 324
Target Start/End: Original strand, 3103 - 3272
Alignment:
Q  155 gaaaagaaatgctagtatcagatgataatatttagtccaaaaagagcaaagtcgtattaaaactaaataacaaaatgatcatatatatcaatcttactca 254  Q
    ||||| |||| ||||||| ||||| | |||||||||||||||||||||||||| ||| |||||||||||||||| ||| |||| ||||||||||||||||    
T  3103 gaaaaaaaatactagtatgagatggtcatatttagtccaaaaagagcaaagtcatatcaaaactaaataacaaattgaacatagatatcaatcttactca 3202  T
Q  255 cagtgttttctcttaaaacacgaactatatcatcctggcagcataacctacttctttctccaggctcttt 324  Q
    ||||||||||| ||||||||  |||||||||||| |  || ||||| |||||||||||||||||||||||    
T  3203 cagtgttttcttttaaaacattaactatatcatcttcacaccataatctacttctttctccaggctcttt 3272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 155 - 324
Target Start/End: Original strand, 12066 - 12235
Alignment:
Q  155 gaaaagaaatgctagtatcagatgataatatttagtccaaaaagagcaaagtcgtattaaaactaaataacaaaatgatcatatatatcaatcttactca 254  Q
    ||||| |||| ||||||| ||||| | |||||||||||||||||||||||||| ||| |||||||||||||||| ||| |||| ||||||||||||||||    
T  12066 gaaaaaaaatactagtatgagatggtcatatttagtccaaaaagagcaaagtcatatcaaaactaaataacaaattgaacatagatatcaatcttactca 12165  T
Q  255 cagtgttttctcttaaaacacgaactatatcatcctggcagcataacctacttctttctccaggctcttt 324  Q
    ||||||||||| ||||||||  |||||||||||| |  || ||||| |||||||||||||||||||||||    
T  12166 cagtgttttcttttaaaacattaactatatcatcttcacaccataatctacttctttctccaggctcttt 12235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 49 - 86
Target Start/End: Original strand, 3014 - 3051
Alignment:
Q  49 attcatatatatcatttcaattttactagttccctttt 86  Q
    ||||||||||||||||||||||||||||||||||||||    
T  3014 attcatatatatcatttcaattttactagttccctttt 3051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0277; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 49 - 86
Target Start/End: Original strand, 11977 - 12014
Alignment:
Q  49 attcatatatatcatttcaattttactagttccctttt 86  Q
    ||||||||||||||||||||||||||||||||||||||    
T  11977 attcatatatatcatttcaattttactagttccctttt 12014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 18 - 265
Target Start/End: Complemental strand, 61491 - 61238
Alignment:
Q  18 tcttgtctatcacggattccatggaatggagattcatatatatcatttcaattttactagttcccttttaac------aaagnnnnnnncatgaatcaac 111  Q
    |||||||||| ||||||||||| || || | ||||||||||||||||||||||||||| |||||||||||||      |||         ||||||||||    
T  61491 tcttgtctattacggattccatagagtgcaaattcatatatatcatttcaattttactggttcccttttaacgaaaaaaaaaaaaaaaagatgaatcaac 61392  T
Q  112 cacaataaaaataagatgtacaaatattaacatgcaattgagtgaaaagaaatgctagtatcagatgataatattta-gtccaaaaagagcaaagtcgta 210  Q
    ||||||| ||||||||  || | | ||| |  || |||| | ||||||||| |  |||||||||||| |  |||  |  |||||||||||||||||| |     
T  61391 cacaatacaaataaga--tagagaaatttatgtgtaattaactgaaaagaattagtagtatcagatgcttgtatacatatccaaaaagagcaaagtcatg 61294  T
Q  211 ttaaaa-ctaaataacaaaatgatcatatatatcaatcttactcacagtgttttct 265  Q
    |||||| |||||||||||| || || |  |||||||||||||||||||||||||||    
T  61293 ttaaaagctaaataacaaattgttcctgcatatcaatcttactcacagtgttttct 61238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 8e-18; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 18 - 88
Target Start/End: Complemental strand, 18075683 - 18075613
Alignment:
Q  18 tcttgtctatcacggattccatggaatggagattcatatatatcatttcaattttactagttcccttttaa 88  Q
    |||||||||| ||||||||||| || || | ||||||||||||||||||||||||||| ||||||||||||    
T  18075683 tcttgtctattacggattccatagagtgcaaattcatatatatcatttcaattttactggttcccttttaa 18075613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 190 - 265
Target Start/End: Complemental strand, 18075506 - 18075430
Alignment:
Q  190 tccaaaaagagcaaagtcgtattaaaa-ctaaataacaaaatgatcatatatatcaatcttactcacagtgttttct 265  Q
    |||||||||||||||||| | |||||| |||||||||||| || || |  |||||||||||||||||||||||||||    
T  18075506 tccaaaaagagcaaagtcatgttaaaagctaaataacaaattgttcctgcatatcaatcttactcacagtgttttct 18075430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 90
Target Start/End: Original strand, 18653835 - 18653876
Alignment:
Q  49 attcatatatatcatttcaattttactagttcccttttaaca 90  Q
    ||||| ||||||||| ||||||||||| ||||||||||||||    
T  18653835 attcagatatatcatctcaattttacttgttcccttttaaca 18653876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 90
Target Start/End: Original strand, 18677917 - 18677958
Alignment:
Q  49 attcatatatatcatttcaattttactagttcccttttaaca 90  Q
    ||||| ||||||||| ||||||||||| ||||||||||||||    
T  18677917 attcagatatatcatctcaattttacttgttcccttttaaca 18677958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 90
Target Start/End: Original strand, 18687971 - 18688012
Alignment:
Q  49 attcatatatatcatttcaattttactagttcccttttaaca 90  Q
    ||||| ||||||||| ||||||||||| ||||||||||||||    
T  18687971 attcagatatatcatctcaattttacttgttcccttttaaca 18688012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 90
Target Start/End: Original strand, 18722431 - 18722472
Alignment:
Q  49 attcatatatatcatttcaattttactagttcccttttaaca 90  Q
    ||||| ||||||||| ||||||||||| ||||||||||||||    
T  18722431 attcagatatatcatctcaattttacttgttcccttttaaca 18722472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 49 - 90
Target Start/End: Original strand, 18729853 - 18729894
Alignment:
Q  49 attcatatatatcatttcaattttactagttcccttttaaca 90  Q
    ||||| ||||||||| ||||||||||| ||||||||||||||    
T  18729853 attcagatatatcatctcaattttacttgttcccttttaaca 18729894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 29 - 84
Target Start/End: Original strand, 17991485 - 17991540
Alignment:
Q  29 acggattccatggaatggagattcatatatatcatttcaattttactagttccctt 84  Q
    ||||||| |||||||| || |||| |||||||||||||||||||||||||||||||    
T  17991485 acggatttcatggaatcgaaattcgtatatatcatttcaattttactagttccctt 17991540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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