View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5361_high_2 (Length: 802)
Name: NF5361_high_2
Description: NF5361
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5361_high_2 |
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Alignment Details
Target: chr6 (Bit Score: 85; Significance: 4e-40; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 193 - 293
Target Start/End: Original strand, 14029167 - 14029267
Alignment:
| Q |
193 |
tgtggtcctaattacttggaaagttatgtatcaatagctaaagaaatcctttttaatggtcctaataattacttaaaaatgataatttttctgttaacag |
292 |
Q |
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| T |
14029167 |
tgtggtcataattacttggaaagttatgtatcaatagcttaagaaatcctttttaatagtcctaataattacttaaaaatgataatttttttgttaacag |
14029266 |
T |
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| Q |
293 |
a |
293 |
Q |
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| T |
14029267 |
a |
14029267 |
T |
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Target: chr6; HSP #2
Raw Score: 69; E-Value: 2e-30
Query Start/End: Original strand, 110 - 209
Target Start/End: Original strand, 14029054 - 14029151
Alignment:
| Q |
110 |
aaggattctggtcctaataattatcacacaaattatcacgtatatatttttgttcctaattacttaaatatcaatgtattgtttgtggtcctaattactt |
209 |
Q |
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| T |
14029054 |
aaggattctgatcctaataattattacacaaattatcccgtata--tttttgttcctaattacttaaatatcaatttattgtttatggtcctaattactt |
14029151 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 63; E-Value: 6e-27
Query Start/End: Original strand, 110 - 188
Target Start/End: Original strand, 13936995 - 13937073
Alignment:
| Q |
110 |
aaggattctggtcctaataattatcacacaaattatcacgtatatatttttgttcctaattacttaaatatcaatgtat |
188 |
Q |
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| T |
13936995 |
aaggattatgatcctaataattatcacacaaattataccgtatatatttttgttcctaattacttaaatatcaatgtat |
13937073 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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