View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5361_high_8 (Length: 327)
Name: NF5361_high_8
Description: NF5361
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5361_high_8 |
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Alignment Details
Target: chr7 (Bit Score: 274; Significance: 1e-153; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 1 - 322
Target Start/End: Complemental strand, 19343369 - 19343053
Alignment:
| Q |
1 |
taaataaaagaatttagaagaactaaaagattatggaaagcaatatcccatacaaacaagtttatgctccataccattctccactggccctcaaccgctt |
100 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
19343369 |
taaataaaagaatttagaagaactaaaagattatcgaaagcaatatcccatacaaacaagtttatgctccataccattctccactggccctcgaccgctt |
19343270 |
T |
|
| Q |
101 |
ctctaccaaaatagtctgctaccgtattctccttatacctagaaattgcaaacaaccttggaaagcacgtacataacggagtttcacatatccaagggtc |
200 |
Q |
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||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
19343269 |
ctctaccaaaatagtctgctaccatatt-----tatacctagaaattgcaaacaaccttggaaagcacgtacataacgaagtttcacatatccaagggtc |
19343175 |
T |
|
| Q |
201 |
tttccgaaactttgtatttagatggccactgctatttgaaccagcttgatgccaccacttgatctaaaggaaaaatatctttccacctccttgacgaatt |
300 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19343174 |
tttccgaaactttgtatttagatggccactcctatttgaaccagcttgatatcaccacttgatctaaaggaaaaatatctttccacctccttgacgaatt |
19343075 |
T |
|
| Q |
301 |
agatagtgacacaacaccatac |
322 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
19343074 |
agatagtgacacaacaccatac |
19343053 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 260; E-Value: 1e-145
Query Start/End: Original strand, 1 - 320
Target Start/End: Original strand, 19375824 - 19376142
Alignment:
| Q |
1 |
taaataaaagaatttagaagaactaaaagattatggaaagcaatatcccatacaaacaagtttatgctccataccattctccactggccctcaaccgctt |
100 |
Q |
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|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
19375824 |
taaataaaagaatttagaagaactaaaagattatcgaaagcaatatcccatacaaacaagtttatgctccataccattctccactggccctcgtccgctt |
19375923 |
T |
|
| Q |
101 |
ctctaccaaaatagtctgctaccgtattctccttatacctagaaattgcaaacaaccttggaaagcacgtacataacggagtttcacatatccaagggtc |
200 |
Q |
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||| ||||||||||| ||||||| ||||||||||||| | ||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||| |
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| T |
19375924 |
ctccaccaaaatagt-tgctaccatattctccttatagccagaaattgcaaacaaccttggaaagcacgtacatagcgaagtttcacatatccaagggtc |
19376022 |
T |
|
| Q |
201 |
tttccgaaactttgtatttagatggccactgctatttgaaccagcttgatgccaccacttgatctaaaggaaaaatatctttccacctccttgacgaatt |
300 |
Q |
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|||||||||||| ||||||||||||||||| ||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19376023 |
tttccgaaacttcgtatttagatggccactcctatttgaaccagcttggtaccaccacttgatctaaaggaaaaatatctttccacctccttgacgaatt |
19376122 |
T |
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| Q |
301 |
agatagtgacacaacaccat |
320 |
Q |
| |
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|||||||||||||||||||| |
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| T |
19376123 |
agatagtgacacaacaccat |
19376142 |
T |
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