View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5361_high_9 (Length: 325)
Name: NF5361_high_9
Description: NF5361
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5361_high_9 |
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| [»] chr1 (2 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 286; Significance: 1e-160; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 21 - 325
Target Start/End: Complemental strand, 5639137 - 5638832
Alignment:
| Q |
21 |
catcatcaaccaatcacttggttatgcacatcgctttatcatgcaaattttatagttcagacctgcaaattcaggtattaatgaaggaaacgtgggggaa |
120 |
Q |
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| T |
5639137 |
catcatcaaccaatcacttggttatgcacatcgctttatcatgcaaattttatagttcagacctgcaaattcaggtattaatgaaggaaacgtgggggaa |
5639038 |
T |
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| Q |
121 |
aaaatgaaagaagttccgtgaaaaacactccctctgaactcaaatttaagtaaaattaactaaatacgtactaagtaagaatattagttaagcttgctta |
220 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||| |
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| T |
5639037 |
aaaatgaaagaagttccgtgaaaaacactccctccgaactcaaatttaagtaaaattaactaaatacgtactaattaagaatattagttaaccttgctta |
5638938 |
T |
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| Q |
221 |
tttttcttggtgcaataagaaaattgcattctccgaactatcattctc-tcactaaatttcctttgaaacttgtttcatgagagcattaattgagtggtg |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5638937 |
tttttcttggtgcaataagaaaattgcattctccgaactatcattctcttcactaaatttcctttgaaacttgtttcatgagagcattaattgagtggtg |
5638838 |
T |
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| Q |
320 |
tttaac |
325 |
Q |
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|||||| |
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| T |
5638837 |
tttaac |
5638832 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 41 - 107
Target Start/End: Complemental strand, 22965327 - 22965261
Alignment:
| Q |
41 |
gttatgcacatcgctttatcatgcaaattttatagttcagacctgcaaattcaggtattaatgaagg |
107 |
Q |
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|||||||||||| ||| ||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
22965327 |
gttatgcacatcacttaatcatgcaaattttatagttcggacctgcaaattcaggtattaatgaagg |
22965261 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 41 - 105
Target Start/End: Original strand, 38954590 - 38954654
Alignment:
| Q |
41 |
gttatgcacatcgctttatcatgcaaattttatagttcagacctgcaaattcaggtattaatgaa |
105 |
Q |
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| T |
38954590 |
gttatgcacatcgcttaatcatgcaaattttatagtttggacctgcaaattcaggtattaatgaa |
38954654 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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