View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5362-Insertion-1 (Length: 632)
Name: NF5362-Insertion-1
Description: NF5362
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5362-Insertion-1 |
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Alignment Details
Target: chr5 (Bit Score: 296; Significance: 1e-166; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 296; E-Value: 1e-166
Query Start/End: Original strand, 125 - 481
Target Start/End: Complemental strand, 508752 - 508403
Alignment:
| Q |
125 |
cccgattgttgtttaacacaatgaaatccaaatataaaaatacttgaagtagccacaaatttaacatgttatcgaaaaatctaaatttctcttgattgat |
224 |
Q |
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| T |
508752 |
cccgattgttgtttaacacaatgaaatcgaaatataaaaatacttgaagtagccacaaatttaacatgttatcgaaaaatctaaatttgtcttgattgat |
508653 |
T |
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| Q |
225 |
gataaacacaaacaaagacaggtttgtttgttaccgtacgtgagtttctttgtaacttttgcatatagctatatatgtggagtgtggatatggagataga |
324 |
Q |
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| T |
508652 |
cataaacacaaacaaagacaggtttgtttgttaccgtacgtgagtttctttgtaacttttgcatatagctatatatgtggagtgtggatatggaga---- |
508557 |
T |
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| Q |
325 |
tagacgcaattttcttagtcctagatatatacgtacattgcatatattgctagccagcacacatacattaatttatca-ttaaatacaactattttcttt |
423 |
Q |
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| T |
508556 |
tagacgcaattttcttagtcctagatatatacgtacattgcatatattgctagccagcacacatac----atttatcatttaaatacaactattttcttt |
508461 |
T |
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| Q |
424 |
gcaacctaattgtctcgtgtgaatctgaaattatcaaattatttaggaggggtgtgcc |
481 |
Q |
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| T |
508460 |
gcaagttaattgtctcgtgtgaatctgaaattatcaaattatttaggaggggtgtgcc |
508403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 529 - 580
Target Start/End: Complemental strand, 508282 - 508231
Alignment:
| Q |
529 |
gacatgtaatctacctttgtctccaaggtctaaaacgttttcatcaaagatg |
580 |
Q |
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| T |
508282 |
gacatgtaatctacctttgtctccaaggtctaaaacgttttcatcaaagatg |
508231 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 60 - 102
Target Start/End: Complemental strand, 508815 - 508773
Alignment:
| Q |
60 |
atgatgttattttacttttaaacccgattgttgtttattcacc |
102 |
Q |
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| T |
508815 |
atgatgttattttacttttaaacccgattgttgtttattcacc |
508773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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