View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5362_high_2 (Length: 449)
Name: NF5362_high_2
Description: NF5362
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5362_high_2 |
 | |
|
| [»] chr5 (2 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 377; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 1 - 449
Target Start/End: Complemental strand, 20649219 - 20648771
Alignment:
| Q |
1 |
cttcactcttctgcataactttagtgtttctctaaatgtagattactttaacatagcatatttaatgaaagaattcattgtgcatgtaaaaggaaatagt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20649219 |
cttcactcttctgcataactttagtgtttctctaaatgtagattactttaacttagcatatttaatgaaagaattcattgtgcatgtaaaaggaaatagt |
20649120 |
T |
|
| Q |
101 |
ttggaacttactttcactccatcatcaaatgattctgatgcatatgcatttgtgaatggtattgaagttgtttcaataccaaatggtttatacattggtg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20649119 |
ttggaacttactttcactccatcatcaaatgattctgatgcatatgcatttgtgaatggtattgaagttgtttcaataccaaatggtttatacattggtg |
20649020 |
T |
|
| Q |
201 |
gtgatgattcccctattgctttagttggccaggatgcaaatgttgtttacatttataatgattcagctatggaaactttgtatagattgaatgtaggagg |
300 |
Q |
| |
|
||||||||||||||||| ||||||||||||| ||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20649019 |
gtgatgattcccctattcctttagttggccacgatacaaaagttgtttacatttataatgattcagctatggaaactttgtatagattgaatgtaggagg |
20648920 |
T |
|
| Q |
301 |
ggaacaaattctaccgaaatttgatactggtatgtttcgcaattgggatatcgatgatggttacatctttatgagatatggtattaaacgcttcaataag |
400 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| | | ||| ||||||| |||||||| | |
|
|
| T |
20648919 |
ggaacaaattctaccgaaatatgatactggtatgtttcgcaattgggatatcgatgatggttacatctttggggtagatgaaattaaacccttcaatagg |
20648820 |
T |
|
| Q |
401 |
agcattgaagttttgtatactgatcatgttcccgagtatactgctcctg |
449 |
Q |
| |
|
||||| ||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
20648819 |
agcatgaaagttttgtatactgatcatgttccggagtatactgctcctg |
20648771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 1 - 449
Target Start/End: Complemental strand, 20633120 - 20632675
Alignment:
| Q |
1 |
cttcactcttctgcataactttagtgtttctctaaatgtagattactttaacatagcatatttaatgaaagaattcattgtgcatgtaaaaggaaatagt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20633120 |
cttcactcttctgcataactttagtgtttctctaaatgtagattactttaacttagcatatttaatgaaagaattcattgtgcatgtaaaaggaaatagt |
20633021 |
T |
|
| Q |
101 |
ttggaacttactttcactccatcatcaaatgattctgatgcatatgcatttgtgaatggtattgaagttgtttcaataccaaatggtttatacattggtg |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20633020 |
ttggaacttactttcactccatcatcaaatgattctgatgcatatgcatttgtgaatggtattgaagttgtttcaataccaaatggtttatacattggtg |
20632921 |
T |
|
| Q |
201 |
gtgatgattcccctattgctttagttggccaggatgcaaatgttgtttacatttataatgattcagctatggaaactttgtatagattgaatgtaggagg |
300 |
Q |
| |
|
||||||||||||||||| |||| | |||||| ||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20632920 |
gtgatgattcccctattcctttcgctggccacgatacaa---ttgtttacatttataatgattcagctatggaaactttgtatagattgaatgtaggagg |
20632824 |
T |
|
| Q |
301 |
ggaacaaattctaccgaaatttgatactggtatgtttcgcaattgggatatcgatgatggttacatctttatgagatatggtattaaacgcttcaataag |
400 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| | |||||| |||||||||| |
|
|
| T |
20632823 |
ggaacaaattctaccgaaatatgatactggtatgtttcgcaattgggatatcgatgatggttacatctttgggggatatgattttaaacacttcaataag |
20632724 |
T |
|
| Q |
401 |
agcattgaagttttgtatactgatcatgttcccgagtatactgctcctg |
449 |
Q |
| |
|
||||| ||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
20632723 |
agcatgaaagttttgtatactgatcatgttccggagtatactgctcctg |
20632675 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University