View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5362_high_3 (Length: 380)
Name: NF5362_high_3
Description: NF5362
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5362_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 183; Significance: 7e-99; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 183; E-Value: 7e-99
Query Start/End: Original strand, 2 - 223
Target Start/End: Original strand, 6608105 - 6608337
Alignment:
| Q |
2 |
ttataccctagcagtgcatttgtatcaagtataatgagtatttagttttttgttattgaatttaattctgccaattattgttttagacaaatgaaaatga |
101 |
Q |
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| T |
6608105 |
ttataccctagcagtgcatttgtatcaagtataatgagtatttagttttttgttatagaatttaattctgacaattattgttttagacaaatgaaaatga |
6608204 |
T |
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| Q |
102 |
gaaatctaataggaggaggattgagaag-----------gaagcgtcttgacttgtaccagaaggaaaaagaagatatcaaagagaaatgtccttatttc |
190 |
Q |
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| T |
6608205 |
gaaatctaataggaggaggattgagaaggagttcaaccagaagcgccttgacttgtaccagaaggaaaaagaagatatcaaagagaaatgtccttatttc |
6608304 |
T |
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| Q |
191 |
tggacaaatccaaacacacataacatatttata |
223 |
Q |
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| T |
6608305 |
tggacaaatccaaacacacataacatatttata |
6608337 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 256 - 373
Target Start/End: Original strand, 6608333 - 6608450
Alignment:
| Q |
256 |
ttatagtactaaactttttaaaatcaaagaaagagaaaatacaaatgcagatcatatatctagttaacaaccctacaatttttccttatttgaccctgtt |
355 |
Q |
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| T |
6608333 |
ttatagtactaaactttttaaaatcaaaggaagagaaaatacaaatgcagatcatatatctagttaacaaccctacaatttttccttatttgaccctgtt |
6608432 |
T |
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| Q |
356 |
gtcccgtcagaacaccaa |
373 |
Q |
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| T |
6608433 |
gtcccgtcaaaacaccaa |
6608450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 316 - 361
Target Start/End: Original strand, 6600980 - 6601025
Alignment:
| Q |
316 |
tagttaacaaccctacaatttttccttatttgaccctgttgtcccg |
361 |
Q |
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| T |
6600980 |
tagttaacagccctacaatttttccttatttgaccctgctgtcccg |
6601025 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 217 - 281
Target Start/End: Original strand, 6600901 - 6600965
Alignment:
| Q |
217 |
atttatatcatcatttgaggcaggcacggtttcatacaattatagtactaaactttttaaaatca |
281 |
Q |
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||||||||||| |||||||||| || | ||||||||||| || | ||||||| |||||||||||| |
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| T |
6600901 |
atttatatcattatttgaggcaagcccagtttcatacaaatacattactaaattttttaaaatca |
6600965 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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