View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5363-Insertion-2 (Length: 885)
Name: NF5363-Insertion-2
Description: NF5363
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5363-Insertion-2 |
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| [»] chr7 (1 HSPs) |
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| [»] scaffold0047 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 792; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 792; E-Value: 0
Query Start/End: Original strand, 8 - 885
Target Start/End: Complemental strand, 30170018 - 30169155
Alignment:
| Q |
8 |
ctctcaactaactcttattgtgttacactttcatttatgttacagttcacatgcattgcttttcactgtattaactaatacatttcgttgcttttgtcga |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30170018 |
ctctcaactaactcttattgtgttacactttcatttatgttacagttcacatgcattgcttttcactgtattaactaatacatttcgttgcttttgtcga |
30169919 |
T |
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| Q |
108 |
agcagttgattttcctgacccaaataggaaacctatctacacgctcactcgtcatactggtcaggtttctgctttgtaaattgttatttatgtttctctt |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30169918 |
agcagttgattttcctgacccaaataggaaacctatctacacgctcactcgtcatactggtcaggtttctgctttgtaaattgttatttatgtttctctt |
30169819 |
T |
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| Q |
208 |
tatgtggttcttattcttattcagtgtaaaatttgtatatactttcgttgccttttcaattgaatgcttctatttttctgttcacttttctttcacattg |
307 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30169818 |
tatgctgttcttattcttattcagtgtaaaatttgtatatactttcgttgccttttcaattgaatgcttctatttttctgttcacttttctttcacattg |
30169719 |
T |
|
| Q |
308 |
tgaagtcatgtatcatatgtgttcaaggtgttttttgaaattcctgttgcttcttgtgtagatcaagtatactcacttgcatgcagcccaatcgatgcaa |
407 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| |
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| T |
30169718 |
tgaagtcatgtatcatatgtgttcaaggtgttttttgaaattcctgttgcttcttgtgtagatcaagtatactca--tgcatgcagcccaatagatgcaa |
30169621 |
T |
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| Q |
408 |
ctttggtggctacagggggtggggtgatgccagaggaattttatggaagattggccaaggaaatagggcttctgagcttcaaggtattttcatgatacat |
507 |
Q |
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| T |
30169620 |
ctttggtggctacagggggt--ggtgatgccagaggaattttatggaagattggccaaggaaatagggcttctgagcttcaaggtattttcatgatacat |
30169523 |
T |
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| Q |
508 |
aagctactaattaattgattggatatttatttatcgatcttggataattgatgttatttatctacttctgtgcaggtcattctgattctgtatctagttt |
607 |
Q |
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| T |
30169522 |
aagctactaattaattgattggatatttatttatcgatcttggataattgatgttatttatctacttctgtgcaggtcattctgattctgtatctagttt |
30169423 |
T |
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| Q |
608 |
agcttttagctatgatgggaagtttcttgcatctggaagcatggatggaattgttcaagtttgggatgtatatggaaatttgagtagtgtgcttaatggt |
707 |
Q |
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| T |
30169422 |
agcttttagctatgatgggaagtttcttgcatctggaagcatggatggaattgttcaagtttgggatgtatatggaaatttgagtagtgtgcttaatggt |
30169323 |
T |
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| Q |
708 |
cctaatgatggcattgaggtaaaatgagattcttaactttcccatgaaatctttcactttcagtggctcagatggaatccgagagatggtggtagtgtga |
807 |
Q |
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| T |
30169322 |
cctaatggtggcattgaggtaaaatgagattcttaactttcccatgaaatctttcactt--------tcagatggaatccgagagatggtggtagtgtga |
30169231 |
T |
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| Q |
808 |
cctgcggtgatttcacccccgatggtactaatttctctcttcatattttcttgatgcatcttcctttatctattatta |
885 |
Q |
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| T |
30169230 |
cctgcggtgatttcacccctcatggtactaatt--tctcttcatattttcttgatgcatcttcctttatctattatta |
30169155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000005; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 597 - 682
Target Start/End: Complemental strand, 27744386 - 27744301
Alignment:
| Q |
597 |
gtatctagtttagcttttagctatgatgggaagtttcttgcatctggaagcatggatggaattgttcaagtttgggatgtatatgg |
682 |
Q |
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| T |
27744386 |
gtatctagtttagcttttagctacgatggacagtttcttgcatcaggaagcatcgatagggttgtttaagtctaagatgtatatgg |
27744301 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 404 - 496
Target Start/End: Complemental strand, 27744579 - 27744489
Alignment:
| Q |
404 |
gcaactttggtggctacagggggtggggtgatgccagaggaattttatggaagattggccaaggaaatagggcttctgagcttcaaggtattt |
496 |
Q |
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| T |
27744579 |
gcaacgttggtggctacaggtggtag--tgattccggaggatttctctggaagatcggccaatgaaataaagattctgagcttcaaggtattt |
27744489 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0047 (Bit Score: 31; Significance: 0.00000008; HSPs: 1)
Name: scaffold0047
Description:
Target: scaffold0047; HSP #1
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 793 - 880
Target Start/End: Complemental strand, 56114 - 56028
Alignment:
| Q |
793 |
atggtggtagtgtgacctgcggtgatttcacccccgatggtactaatttctctcttcatattttct---tgatgcatcttcctttatctat |
880 |
Q |
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|||||| ||||||||||| |||||||||| ||| |||||||||||| || ||||||||||||| || ||||||||||||||||||| |
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| T |
56114 |
atggtgttagtgtgacctctggtgatttca-ccctgatggtactaat---tcccttcatattttcttcgtgttgcatcttcctttatctat |
56028 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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