View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5363-Insertion-3 (Length: 522)
Name: NF5363-Insertion-3
Description: NF5363
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5363-Insertion-3 |
 | |
|
| [»] chr4 (1 HSPs) |
| |
|
Alignment Details
Target: chr4 (Bit Score: 374; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 374; E-Value: 0
Query Start/End: Original strand, 18 - 522
Target Start/End: Original strand, 43033044 - 43033530
Alignment:
| Q |
18 |
atatggggttcaatttgtaaaggagaatgacatggttcaatatattacattgatatggatactgtctattagtaatatgatagagtacttaacccaattg |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| ||||||| ||||||||| | | ||||||| ||||| |
|
|
| T |
43033044 |
atatggggttcaatttgtaaaggagaatgacagggttcaatatattacattgatataaatactatctattattaatatgatgggctgcttaacctaattg |
43033143 |
T |
|
| Q |
118 |
tgcttttcataataataaaaatcatcaataagattattggctcttattaaatagagcagtaaaatgagaagattgctttctcaattagcaaacttattga |
217 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43033144 |
tgcttttcataataataaaaatcatctataagattattgactcttattaaatagagcagtaaaatgagaagattgctttctcaattagcaaacttattga |
43033243 |
T |
|
| Q |
218 |
ttacacagtatgcgctaaatatcttttaagatactccaggatataccatagtgatgtattgttaacactctccctctaaggtatagcttgttattgttaa |
317 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43033244 |
ttacacagtatacgctaaatatcttttaagatactccaagatataccatagtgatgtattgttaacactctccctctaaggtatagcttgttattgttaa |
43033343 |
T |
|
| Q |
318 |
tccttaagttatctggagagacactcttgttagggtgtgcaatggcagaggtctgatgcagttgcaagggtgttcaattggagaggaggtaaataggatt |
417 |
Q |
| |
|
|| |||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43033344 |
tctttaagttatccggagagacactcttgttaggg------------------tgatgcagttgcaagggtgttcaattggagaggaggtaaataggatt |
43033425 |
T |
|
| Q |
418 |
taaagtaaagccaatctgcataaaagacaagacctaaataaaatcaatctgcgtaacaagatggagtagagccaacacgctctaagataggtttaaagta |
517 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
43033426 |
tcaagtaaagccaatctgcataaaagacaagacctaaataaaatcaatctgcgtaacaagatggagtagagccaacacgctctaagataggtataaagta |
43033525 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University