View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5363-Insertion-4 (Length: 490)
Name: NF5363-Insertion-4
Description: NF5363
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5363-Insertion-4 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 256; Significance: 1e-142; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 231 - 490
Target Start/End: Complemental strand, 39809421 - 39809162
Alignment:
| Q |
231 |
atgtatgttgatgaatgaaaattggcaatcaagtttgataataattgaatgataaaaaccttcttcttcttgcgagcaagatgccaaatacgccaacaca |
330 |
Q |
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| T |
39809421 |
atgtatattgatgaatgaaaattggcaatcaagtttgataataattgaatgataaaaaccttcttcttcttgcgagcaagatgccaaatacgccaacaca |
39809322 |
T |
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| Q |
331 |
tgttctcaagtcttgagctacgttcccttgtattacgagtggcaacaaccttaagccatgtacgatgaagatcagactcatcaacagcactcactacttc |
430 |
Q |
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| T |
39809321 |
tgttctcaagtcttgagctacgttcccttgtattacgagtggcaacaaccttaagccatgtacgatgaagatcagactcatcaacagcactcactacttc |
39809222 |
T |
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| Q |
431 |
ttcaacaaagtactttgttggattgaaatgatcaccactttctctcgctgcagccgccac |
490 |
Q |
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| T |
39809221 |
ttcaacaaagtactttgttggattgaaatgatcaccactttctctcgctgcagccgccac |
39809162 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 8 - 147
Target Start/End: Complemental strand, 39809593 - 39809454
Alignment:
| Q |
8 |
atgctaacctttgaagttcctctccttccacctacaaagtatgcctcattagtactctactagtttcaccaaacaaatcaagtgtttgagctgaaacact |
107 |
Q |
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| T |
39809593 |
atgctaacctttgaagttcctctccttccacctacaaagtatgcctcattagtactctactagtttcaccaaacaaatcaagtgtttgagctgaaacact |
39809494 |
T |
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| Q |
108 |
caaaaaatgtagaagactaattaagagttcaaactttggt |
147 |
Q |
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| T |
39809493 |
caaaaaatgtagaagactaattaagagttcaaactttggt |
39809454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 54; Significance: 8e-22; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 287 - 460
Target Start/End: Complemental strand, 15794985 - 15794812
Alignment:
| Q |
287 |
aaccttcttcttcttgcgagcaagatgccaaatacgccaacacatgttctcaagtcttgagctacgttcccttgtattacgagtggcaacaaccttaagc |
386 |
Q |
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| T |
15794985 |
aacctgcttcttctttcgtgcaagatgccaaatacgccaacacatgttctccaaccttgaacttctttcccttgtgttgcgtgttgcaaccaccttaacc |
15794886 |
T |
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| Q |
387 |
catgtacgatgaagatcagactcatcaacagcactcactacttcttcaacaaagtactttgttggattgaaatg |
460 |
Q |
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| T |
15794885 |
caagtgcgatataaatcagattcatcaacacttgccacaacctcttccacaaaatactttgttggattgaaatg |
15794812 |
T |
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