View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5363-Insertion-5 (Length: 386)
Name: NF5363-Insertion-5
Description: NF5363
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5363-Insertion-5 |
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Alignment Details
Target: chr6 (Bit Score: 222; Significance: 1e-122; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 12 - 282
Target Start/End: Complemental strand, 12196375 - 12196105
Alignment:
| Q |
12 |
gatagagtgttcagattgagcaaagccttatatggtttgaaacaagcaactagagcctggaataaaagaattgacaaattctgcaatgatgaatttatgt |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||| ||||||||||||||||||| ||||| |
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| T |
12196375 |
gatagagtgttcagattgagcaaagccttatatggtttgaaacaagcacctagagcctgaaataaaagaattgataaattctgcaatgatgaatctatgt |
12196276 |
T |
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| Q |
112 |
tctcctctccgttctctctaacaacaagtttaagatgtgtaagatatctctgaattgtgtattacatctatttatatataagtnnnnnnngtgcatattt |
211 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
12196275 |
tctcctctccgttctctctaacaacaagtttaagatgcgtaagatatctctgaattgtgtattacatctatttatatataagtaaaaaaagtgcatattt |
12196176 |
T |
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| Q |
212 |
tcctagaaaaatttgctcgtctagcgatcttaggtttcttcaggtggtgggaaaagcgagctcatccaaag |
282 |
Q |
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| T |
12196175 |
tcctagaaaaatttgctcgtctagcgatcttaagtttcttcaggtggagggaaaagcgagctcatccaaag |
12196105 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 278 - 385
Target Start/End: Complemental strand, 12195353 - 12195246
Alignment:
| Q |
278 |
caaagggtcactaacaccgccttacttggctaggagaaatgttgttttcctatcgaatgttcacttgcttcttccatgaaactctcttcaattcctttct |
377 |
Q |
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| T |
12195353 |
caaagggtcactaacaccgccttacttggctaggagaaatgttgtttgcctatcgaatgttcacttgcttcttccatgaaaccctcttcaattcctttct |
12195254 |
T |
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| Q |
378 |
ttgacctc |
385 |
Q |
| |
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|||||||| |
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| T |
12195253 |
ttgacctc |
12195246 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 40 - 88
Target Start/End: Original strand, 17162981 - 17163029
Alignment:
| Q |
40 |
tatatggtttgaaacaagcaactagagcctggaataaaagaattgacaa |
88 |
Q |
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| T |
17162981 |
tatatggtttgaagcaagcaccaagagcctggaacaagagaattgacaa |
17163029 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 242 - 385
Target Start/End: Original strand, 22253673 - 22253816
Alignment:
| Q |
242 |
taggtttcttcaggtggtgggaaaagcgagctcatccaaagggtcactaacaccgccttacttggctaggagaaatgttgttttcctatcgaatgttcac |
341 |
Q |
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||||||||||||| ||| | ||||||| | |||||||||| ||||||||||| ||||||| || || |||||||||||| | ||| ||||| | | | |
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| T |
22253673 |
taggtttcttcagatggagtgaaaagccaactcatccaaaaggtcactaacatcgccttatttttcttggagaaatgttgatcgcctcgcgaatctgctc |
22253772 |
T |
|
| Q |
342 |
ttgcttcttccatgaaactctcttcaattcctttctttgacctc |
385 |
Q |
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| T |
22253773 |
ttgcttcttccctgaaactctctagaactcctcgctttgacctc |
22253816 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 12 - 93
Target Start/End: Original strand, 14640022 - 14640103
Alignment:
| Q |
12 |
gatagagtgttcagattgagcaaagccttatatggtttgaaacaagcaactagagcctggaataaaagaattgacaaattct |
93 |
Q |
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|||||||| |||| ||| | ||||| || ||||| |||||||||||| ||||||| ||||||||||||||||| ||||||| |
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| T |
14640022 |
gatagagttttcaaattaaataaagctttgtatggattgaaacaagcacctagagcgtggaataaaagaattgaaaaattct |
14640103 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 12 - 93
Target Start/End: Original strand, 39735149 - 39735230
Alignment:
| Q |
12 |
gatagagtgttcagattgagcaaagccttatatggtttgaaacaagcaactagagcctggaataaaagaattgacaaattct |
93 |
Q |
| |
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|||||||| || | ||||| |||||| || |||| |||||||||||| |||||||||||||||||| ||| |||| ||||| |
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| T |
39735149 |
gatagagtatttaaattgaacaaagctttgtatgacttgaaacaagcacctagagcctggaataaaaaaatcgacatattct |
39735230 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 12 - 89
Target Start/End: Original strand, 33684718 - 33684795
Alignment:
| Q |
12 |
gatagagtgttcagattgagcaaagccttatatggtttgaaacaagcaactagagcctggaataaaagaattgacaaa |
89 |
Q |
| |
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||||||||||||||| ||| |||| | || ||||| || ||||||||| | |||||||| |||||||||||||||||| |
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| T |
33684718 |
gatagagtgttcagactgaacaaaactttgtatggcttaaaacaagcaccaagagcctgaaataaaagaattgacaaa |
33684795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 12 - 89
Target Start/End: Original strand, 33701772 - 33701849
Alignment:
| Q |
12 |
gatagagtgttcagattgagcaaagccttatatggtttgaaacaagcaactagagcctggaataaaagaattgacaaa |
89 |
Q |
| |
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||||||||||||||| ||| |||| | || ||||| || ||||||||| | |||||||| |||||||||||||||||| |
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| T |
33701772 |
gatagagtgttcagactgaacaaaactttgtatggcttaaaacaagcaccaagagcctgaaataaaagaattgacaaa |
33701849 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 33 - 71
Target Start/End: Original strand, 9667042 - 9667080
Alignment:
| Q |
33 |
aaagccttatatggtttgaaacaagcaactagagcctgg |
71 |
Q |
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| T |
9667042 |
aaagccttatatggtttgaaacaagctcctagagcctgg |
9667080 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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