View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5363-Insertion-6 (Length: 300)

Name: NF5363-Insertion-6
Description: NF5363
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5363-Insertion-6
NF5363-Insertion-6
[»] chr3 (1 HSPs)
chr3 (8-300)||(52272865-52273157)


Alignment Details
Target: chr3 (Bit Score: 285; Significance: 1e-160; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 8 - 300
Target Start/End: Complemental strand, 52273157 - 52272865
Alignment:
Q  8 acatcaatattttgtttcagcatgcacttaattgggatatttttactttagataaacactaatggatacttgggttgggtttcagatctaatgtttcttt 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52273157 acatcaatattttgtttcagcatgcacttaattgggatatttttactttagataaacactaatggatacttgggttgggtttcagatctaatgtttcttt 52273058  T
Q  108 tcatgacaatgatggcttccatgtggatattgattctgagcctcgccccagtgaagagataactaataagattgaaaatgctgaatccgaagaaacacca 207  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52273057 tcatgacaatgatggcttccatgtggatattgattctgatcctcgccctagtgaagagataactaataagattgaaaatgctgaatccgaagaaacacca 52272958  T
Q  208 gctacacgccctgcagagaatgatttaagcacactgcatattgatggttccaccgatgctgcagatcattcgagccgtgaaagtattccttct 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52272957 gctacacgccctgcagagaatgatttaagcacactgcatattgatggttccaccgatgctgcagatcattcgagccgtgaaagtattccttct 52272865  T

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