View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5363_high_3 (Length: 370)
Name: NF5363_high_3
Description: NF5363
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5363_high_3 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 22 - 360
Target Start/End: Original strand, 29534601 - 29534940
Alignment:
| Q |
22 |
atactttaatacacacaatataatgcccttctcatatttaattatttcctctcatgaaaacagtcaaattttaagcttgaacttactaaagcacatatac |
121 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29534601 |
atactttagtacacacaatataatgcccttctcatatttaattatttcctctcatgaaaacagtcaaattttaagcttgaacttactaaagcacatatac |
29534700 |
T |
|
| Q |
122 |
aaacctaaagactgaagactgatttaacaccagtaaaagtcatgtttagccggcctacaaacaccaccgctgaactggggaag-nnnnnnnnnctacatc |
220 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
29534701 |
aaacctaaagactgaagactgatttaacaccagtaaaagtcatgtttagccggcctacaaacaccaccgctgaactggggaagaaaaaaaaaactacatc |
29534800 |
T |
|
| Q |
221 |
agcaagagcactccatgacagaacctgcactcttgcaacactactgcataactatgttttcactaatgttgttctctttgtcatgctcataggacctaat |
320 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29534801 |
agcaagaccactccatgacagaacctgcactcttgcaacactactgcataactatgttttcattaatgttgttctctttgtcatgctcataggacctaat |
29534900 |
T |
|
| Q |
321 |
aggaaagactttgtttgcatccatgcccgtagtgtctctg |
360 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29534901 |
aggaaagactttgtttgcatccatgcccgtagtgtctctg |
29534940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 278; Significance: 1e-155; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 22 - 360
Target Start/End: Complemental strand, 54420185 - 54419845
Alignment:
| Q |
22 |
atactttaatacacacaatataatgcccttctcatatttaattatttcctctcatgaaaacagtcaaattttaagcttgaacttactaaagcacatatac |
121 |
Q |
| |
|
||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54420185 |
atactttaatacacacagtttaatgcccttctcatatttaattatttcctctcatgaaaacagtcaaattttaagcttgaacttactaaagcacatatac |
54420086 |
T |
|
| Q |
122 |
aaacctaaagactgaagactga-tttaacaccagtaaaagtcatgtttagccggcctacaaacaccaccgctgaactggggaag-nnnnnnnnnctacat |
219 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| |
|
|
| T |
54420085 |
aaacctaaagactgaagactgattttaacaccagtaaaagtcatgtttagccggcctacaaacaccaccgctgaaccggggaagaaaaaaaaaactacat |
54419986 |
T |
|
| Q |
220 |
cagcaagagcactccatgacagaacctgcactcttgcaacactactgcataactatgttttcactaatgttgttctctttgtcatgctcataggacctaa |
319 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
54419985 |
cagcaagaccactccatgacagaacctgcactcttgcaacactactgcataactatgttttcactaatgttgttctccttgtcatgctcataggacctaa |
54419886 |
T |
|
| Q |
320 |
taggaaagactttgtttgcatccatgcccgtagtgtctctg |
360 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54419885 |
taggaaagactttgtttgcatccatgcccgtagtgtctctg |
54419845 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 93
Target Start/End: Complemental strand, 1143443 - 1143368
Alignment:
| Q |
22 |
atactttaatacacacaatataatgcccttctcatattt----aattatttcctctcatgaaaacagtcaaatttt |
93 |
Q |
| |
|
||||||||||| ||||||| |||| |||||| ||||||| | ||||| ||||||||||||||| ||||||||| |
|
|
| T |
1143443 |
atactttaatatacacaatttaatacccttcccatatttattgatttattccctctcatgaaaacaatcaaatttt |
1143368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 230; Significance: 1e-127; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 22 - 334
Target Start/End: Complemental strand, 2841091 - 2840776
Alignment:
| Q |
22 |
atactttaatacacacaatataatgcccttctcatatttaattatttcctctcatgaaaacagtcaaattttaagcttgaacttactaaagcacatatac |
121 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
2841091 |
atactttaatacacacaatttaatgcccttctcatatttaattatttcctctcatgaaaacagtcaaattttaaacttgaacttactaaagcacatatac |
2840992 |
T |
|
| Q |
122 |
aaacctaaagactgaagactga-tttaacaccagtaaaagtcatgtttagccggcctacaaacaccaccgctgaactggggaag--nnnnnnnnnctaca |
218 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| ||||| |
|
|
| T |
2840991 |
aaacctaaagactgaagactgattttaacaccagtaaaagtcatgtttagccggcctacaaacaccaccgctgaatcgtggaagaaaaaaaaaaactaca |
2840892 |
T |
|
| Q |
219 |
tcagcaagagcactccatgacagaacctgcactcttgcaacactactgcataactatgttttcactaatgttgttctctttgtcatgctcataggaccta |
318 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||| |||| |||||||||||||||| |
|
|
| T |
2840891 |
tcagcaagaccactccatgacagaacctgcactcttgcaacactactgcataactgtgttttcactaatgtcgttctccttgttatgctcataggaccta |
2840792 |
T |
|
| Q |
319 |
ataggaaagactttgt |
334 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
2840791 |
ataggaaagactttgt |
2840776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 118; E-Value: 4e-60
Query Start/End: Original strand, 22 - 143
Target Start/End: Complemental strand, 2848474 - 2848353
Alignment:
| Q |
22 |
atactttaatacacacaatataatgcccttctcatatttaattatttcctctcatgaaaacagtcaaattttaagcttgaacttactaaagcacatatac |
121 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2848474 |
atactttaatacacacaatttaatgcccttctcatatttaattatttcctctcatgaaaacagtcaaattttaagcttgaacttactaaagcacatatac |
2848375 |
T |
|
| Q |
122 |
aaacctaaagactgaagactga |
143 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
2848374 |
aaacctaaagactgaagactga |
2848353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 132 - 169
Target Start/End: Complemental strand, 2848209 - 2848171
Alignment:
| Q |
132 |
actgaagactgattt-aacaccagtaaaagtcatgttta |
169 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
2848209 |
actgaagactgattttaacaccagtaaaagtcatgttta |
2848171 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 285 - 344
Target Start/End: Complemental strand, 31984458 - 31984397
Alignment:
| Q |
285 |
aatgttgttctctttgtcat--gctcataggacctaataggaaagactttgtttgcatccat |
344 |
Q |
| |
|
|||||| ||||||||||||| ||||| ||| ||||||| ||||||||||||||||||||| |
|
|
| T |
31984458 |
aatgttattctctttgtcatatgctcaaaggttctaatagcaaagactttgtttgcatccat |
31984397 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 22 - 360
Target Start/End: Complemental strand, 6981796 - 6981470
Alignment:
| Q |
22 |
atactttaatacacacaatataatgcccttctcatatttaattatttcctctcatgaaaacagtcaaattttaagcttgaacttactaaagcacatatac |
121 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
6981796 |
atactttaatacacacaatttaatgcccttctcatatttaattatttcttctcatgaaaacagtcaaattttaattttgaacttactaaagcacatatac |
6981697 |
T |
|
| Q |
122 |
aaacctaaagactgaagactga-tttaacaccagtaaaagtcatgtttagccggcctacaaacaccaccgctgaactggggaagnnnnnnnnnctacatc |
220 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||| |||||||| ||||||| |||||| |
|
|
| T |
6981696 |
aaacctaaagactgaagactgattttaacaccagtaaaagtcatgtttagctggcctacaaacaccatcgctgaaccggggaagaaaaaaaaa-tacatc |
6981598 |
T |
|
| Q |
221 |
agcaagagcactccatgacagaacctgcactcttgcaacactactgcataactatgttttcactaatgttgttctctttgtcatgctcataggacctaat |
320 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
6981597 |
agcaagaccactccatgacagaacctgcactcttgca------------aactatgttttcactaatgttgttctccttgtcatgctcataggacctaat |
6981510 |
T |
|
| Q |
321 |
aggaaagactttgtttgcatccatgcccgtagtgtctctg |
360 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6981509 |
aggaaagactttgtttgcatccatgcccgtagtgtctctg |
6981470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 257 - 343
Target Start/End: Original strand, 22291032 - 22291121
Alignment:
| Q |
257 |
aacactactgcataactatgttttcactaatgttgttctctt---tgtcatgctcataggacctaataggaaagactttgtttgcatcca |
343 |
Q |
| |
|
||||||| |||| |||| || ||||||||||||||||||| | || ||||||| |||| |||||||| ||||| ||||||| |||||| |
|
|
| T |
22291032 |
aacactattgcaaaactttgatttcactaatgttgttctcctcactgccatgctcgtaggtcctaatagcaaagaatttgtttacatcca |
22291121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 139; Significance: 1e-72; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 214 - 360
Target Start/End: Original strand, 51853322 - 51853468
Alignment:
| Q |
214 |
ctacatcagcaagagcactccatgacagaacctgcactcttgcaacactactgcataactatgttttcactaatgttgttctctttgtcatgctcatagg |
313 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
51853322 |
ctacatcagcaagaccactccatgacagaacctgcactcttgcaacactactgcataactatgttttcactaatgttgttctccttgtcatgctcatagg |
51853421 |
T |
|
| Q |
314 |
acctaataggaaagactttgtttgcatccatgcccgtagtgtctctg |
360 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51853422 |
acctaataggaaagactttgtttgcatccatgcccgtagtgtctctg |
51853468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University