View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5363_low_10 (Length: 258)
Name: NF5363_low_10
Description: NF5363
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5363_low_10 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 31 - 258
Target Start/End: Original strand, 12196422 - 12196650
Alignment:
| Q |
31 |
gtctcttctaatgtaccattcagaaatgcaaactttactagttgctaacgctataaccaatctgatagtttcatgtcttgcaactg-tgagaaaacttta |
129 |
Q |
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| T |
12196422 |
gtctcttctaatgtaccattcagaaatgcaaactttactagttgctaatactataaccaatctgatagtttcatgtcttgcatctggtgagaaaacttta |
12196521 |
T |
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| Q |
130 |
gtgtaatcaaaactttccttctaaataaacctctagccaaaagccttgctttgtgcttcacaatcttcccttcttgattaaattttaacttgaaaaccaa |
229 |
Q |
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| T |
12196522 |
gtgtaatcaaaaccttccttctaaataaacctctagccaaaagccttgcttcgtgattcacaatcttcccttcttgattaaattttaacttgaaaaccaa |
12196621 |
T |
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| Q |
230 |
ttttatatctattgccttctttccatctc |
258 |
Q |
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| T |
12196622 |
ttttatatctattgccttttttccatctc |
12196650 |
T |
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Target: chr7 (Bit Score: 56; Significance: 3e-23; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 89 - 257
Target Start/End: Original strand, 6372476 - 6372647
Alignment:
| Q |
89 |
aatctgatagtttcatgtctt-gcaactg-tgagaaaactttagtgtaatcaaaactttccttcta-aataaacctctagccaaaagccttgctttgtgc |
185 |
Q |
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| T |
6372476 |
aatctgatagtttcatgtttttgcaattggtgagaaaacttcagtgtaatcaaagccttcattctataagaaacctctagccacaagtcttgctttttga |
6372575 |
T |
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| Q |
186 |
ttcacaatcttcccttcttgattaaattttaacttgaaaaccaattttatatctattgccttctttccatct |
257 |
Q |
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| T |
6372576 |
ttcacaatcttcccgtcagggttcaatttaaacttgaagacccatttgacatctattgctttctttcaatct |
6372647 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 92 - 254
Target Start/End: Complemental strand, 10332894 - 10332730
Alignment:
| Q |
92 |
ctgatagtttcatgtcttgcaactg-tgagaaaactttagtgtaatcaaaactttccttcta-aataaacctctagccaaaagccttgctttgtgcttca |
189 |
Q |
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| T |
10332894 |
ctgatggtttcatgtcatgcaactggtgagaaaactttagtatagttaaatccttccttccataagaattctttagctacaagcctggctttgtgcttca |
10332795 |
T |
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| Q |
190 |
caatcttcccttcttgattaaattttaacttgaaaaccaattttatatctattgccttctttcca |
254 |
Q |
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| T |
10332794 |
caatcttcccttcaaggttcaatttcagcttaaaaacccatttgaaatcaattgctttctttcca |
10332730 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 91 - 256
Target Start/End: Complemental strand, 14639886 - 14639719
Alignment:
| Q |
91 |
tctgatagtttcatgtcttgcaactg-tgagaaaactttagtgtaatcaaaactttccttcta-aataaacctctagccaaaagccttgctttgtgcttc |
188 |
Q |
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|||||| ||||||||||||| ||||| |||||| |||| ||| |||||||| | |||||||| || ||| ||||||||| ||| || |||||||||||| |
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| T |
14639886 |
tctgatggtttcatgtcttggaactggtgagaacacttcagtataatcaaagccttccttcttcaagaaaactctagccacaagtctagctttgtgcttc |
14639787 |
T |
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| Q |
189 |
acaatcttcccttcttgattaaattttaacttgaaaaccaattttatatctattgccttctttccatc |
256 |
Q |
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| T |
14639786 |
acaatcttcccttcaggattcaatttcaacttaaagacccatttaacatctattgctttcttaccatc |
14639719 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 45; Significance: 1e-16; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 80 - 151
Target Start/End: Complemental strand, 33684593 - 33684521
Alignment:
| Q |
80 |
gctataaccaatctgatagtttcatgtcttgcaact-gtgagaaaactttagtgtaatcaaaactttccttct |
151 |
Q |
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| T |
33684593 |
gctataatcaatctgatagtttcatgccttgcaactggtgagaaaacttcagtgtaatcaaaaccttctttct |
33684521 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 80 - 151
Target Start/End: Complemental strand, 33701647 - 33701575
Alignment:
| Q |
80 |
gctataaccaatctgatagtttcatgtcttgcaact-gtgagaaaactttagtgtaatcaaaactttccttct |
151 |
Q |
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||||||| |||||||||||||||||| ||||||||| |||||||||||| |||||||||||||| ||| |||| |
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| T |
33701647 |
gctataatcaatctgatagtttcatgccttgcaactggtgagaaaacttcagtgtaatcaaaaccttctttct |
33701575 |
T |
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