View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5363_low_11 (Length: 257)
Name: NF5363_low_11
Description: NF5363
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5363_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 17 - 249
Target Start/End: Original strand, 3550082 - 3550314
Alignment:
| Q |
17 |
cacaatcttcattggatataagcaaaatccaattcaacggggtaagaatatttcctgtatgcatcttgatctcttcaattacaatgttgcataaactttt |
116 |
Q |
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| T |
3550082 |
cacaatcttcattggatataagcaaaatccaattcaacggggtaagaatatttcctgcacgcatcttgatctcttcaattacaatgttgcataaactttt |
3550181 |
T |
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| Q |
117 |
ggcaattcttaaaataaaatcatactattaatataacaagtattatcggagatgtaggcacaaccgcactttttgtttgtgtttataaatacgttttctt |
216 |
Q |
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| T |
3550182 |
ggcaattctcaaaataaaatcatactattaatataacaagtattatcggagatgtaggcacaaccacactttttgtttgtgtttattaatacgttttctt |
3550281 |
T |
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| Q |
217 |
aagagccggattttctgttctaacaagtattat |
249 |
Q |
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||||||||||||||||||||||||||||||||| |
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| T |
3550282 |
aagagccggattttctgttctaacaagtattat |
3550314 |
T |
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Target: chr2 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 19 - 64
Target Start/End: Complemental strand, 43811325 - 43811280
Alignment:
| Q |
19 |
caatcttcattggatataagcaaaatccaattcaacggggtaagaa |
64 |
Q |
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| T |
43811325 |
caatcttcattggatataagcaaaatccaattcaacagggtaagaa |
43811280 |
T |
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