View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5363_low_2 (Length: 471)
Name: NF5363_low_2
Description: NF5363
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5363_low_2 |
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Alignment Details
Target: chr6 (Bit Score: 417; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 25 - 461
Target Start/End: Complemental strand, 24335133 - 24334697
Alignment:
| Q |
25 |
agtttcttggactttgcaaaatgatgattgaagcaactttaatctttttgtgatcttgtattgtaaattggaacactttagaagcattgaagctttgaag |
124 |
Q |
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| T |
24335133 |
agtttcttggactttgcaaagtgatgattgaagcaactttaatctttttgtgatcttgtattgtaaattggaacactttagaagcattgaagctttgaag |
24335034 |
T |
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| Q |
125 |
cttttttgagttcaagttcaaaagctgaaaccaaacacacctttgattagtgtatgtatatctttcttactcaaattcttctattttatgttagtttaat |
224 |
Q |
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| T |
24335033 |
cttttttgagttcaagttcaaaagctgaaaccaaacatacctttgattagtgtatgtatatctttcttactcaaattcttctattttatgttagtttaat |
24334934 |
T |
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| Q |
225 |
ttatatggtttctgtgattttttgcatgaagaatttgttggagtaagacattaatctgtgtaaacaaagtttagtttttaattatttgttttgatgaaaa |
324 |
Q |
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| T |
24334933 |
ttatatggtttctgtgattttttgcatgacgaatttgttggagtaagacattaatctgtgtaaacaaagtttagtttttaattatttgttttgatgaaaa |
24334834 |
T |
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| Q |
325 |
tttcaatttttcaagtgatataacagtttggattggattcacataaggggtttgaactttgatcttgcaccaattggtggatcatgtatggcccactttg |
424 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24334833 |
tttcaatttttcaagtgatataacagtttggattggattcgcataaggggtttgaactttgatcttgcaccaattggtggatcatgtatggcccactttg |
24334734 |
T |
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| Q |
425 |
tgtttctcacgttcttctttgatatgctactagaatt |
461 |
Q |
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| T |
24334733 |
tgtttctcatgttcttctttgatatgctactagaatt |
24334697 |
T |
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