View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5363_low_3 (Length: 375)
Name: NF5363_low_3
Description: NF5363
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5363_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 9 - 369
Target Start/End: Complemental strand, 15006111 - 15005751
Alignment:
| Q |
9 |
gaacaatgtacaccaccattaagatatattgaagcaactcatattgaaactaggaagataaatagtaactctttgtagaacaatagatttgcaaaaataa |
108 |
Q |
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| T |
15006111 |
gaacaatatacaccaccattaagatatattgaagcaactcatattgaagccaggaagataaatagtaactctttgtagaacaatagatttgcaaaaataa |
15006012 |
T |
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| Q |
109 |
aatttgaatataaatgcatttaaagaaatcctaatagattaagttcagacgctaaataatagctcacaaaaatcacatgtaataaactcttaaatttact |
208 |
Q |
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| T |
15006011 |
aatttgaatataaatgcatttaaagaaatcctaatagattaagttcagacgctaaataacagctcacaaaaatcacatgtaataaacacttaaatttact |
15005912 |
T |
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| Q |
209 |
cgatcaaaattcaacctccattcatgaatgacaaatttcagcctaagagttttccttgcccatgatgtgattgttcaaatgcaccaactaacaccttgaa |
308 |
Q |
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| T |
15005911 |
cgatcaaaattcaacctccattcatgaatgacaaatttcagcctaagagttttccttgcccatgatgtgattgttcaaatgcaccaactaacaccttgaa |
15005812 |
T |
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| Q |
309 |
ccaatacctgcactaaaacaaattgattaaacagatgaccaaaataatgacacacaaaaat |
369 |
Q |
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| T |
15005811 |
ccaatacctgcactaaaacaaattgattaaacagatgaccaaaataatgacacacaaaaat |
15005751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 203 - 323
Target Start/End: Complemental strand, 52590016 - 52589896
Alignment:
| Q |
203 |
tttactcgatcaaaattcaacctccattcatgaatgacaaatttcagcctaagagttttccttgcccatgatgtgattgttcaaatgcaccaactaacac |
302 |
Q |
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| T |
52590016 |
tttactcaaacaaaattcaacctccattcatgaatgacaatctccagcaaaagagttttccttgcccaagatgtgattgttcaaatgcaccaagtaactc |
52589917 |
T |
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| Q |
303 |
cttgaaccaatacctgcacta |
323 |
Q |
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| T |
52589916 |
attgaaccaatacttgcacta |
52589896 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 93 - 185
Target Start/End: Original strand, 38971119 - 38971210
Alignment:
| Q |
93 |
agatttgcaaaaataaaatttgaatataaatgcatttaaagaaatcctaatagattaagttcagacgctaaataatagctcacaaaaatcaca |
185 |
Q |
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| T |
38971119 |
agatatgcaaaattaaaata-gaatataaaaacatttaaagaaatgcaaatagattaagtccataagctcaagaacagctcacaaaaatcaca |
38971210 |
T |
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