View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5363_low_6 (Length: 328)
Name: NF5363_low_6
Description: NF5363
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5363_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 272; Significance: 1e-152; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 272; E-Value: 1e-152
Query Start/End: Original strand, 17 - 323
Target Start/End: Original strand, 12105820 - 12106129
Alignment:
| Q |
17 |
actttgtgcacaaattaagaaaaatttatccttaattgatttagctttttacttgcatgatctttttgcagatttggtttattgacattagttatttgct |
116 |
Q |
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| T |
12105820 |
actttgtgctcaaattaagaaaaatttatccttaattgatttagctttttacttgcatgatctttttgaagatttggtttattgacattagttatttgct |
12105919 |
T |
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| Q |
117 |
gcataaggaatgaataaccggttaattttaaaacggtagtgtagcaggcattggcagacaagatttaggtttgttggtcaattttgaaatgtcgatgaag |
216 |
Q |
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| T |
12105920 |
gcataaggaatgaataaccggttaattttaaaacggtagtgtagcaggcattggcagacaagatttaggtttgttggtcaattttgaaatgtcgatgaag |
12106019 |
T |
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| Q |
217 |
gacccttaaattagtattattaattaagagataaatagaaaacatgtt---gaaggtagacactaagtatatgtttagatcagcggtgagtttgatagaa |
313 |
Q |
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| T |
12106020 |
gacccttaaattagtattattaattaagagataaacagaaaacatgttgaagaaggtagacactaagtgcatgtttagatcagcggtgagtttggtagaa |
12106119 |
T |
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| Q |
314 |
tttctgtgtt |
323 |
Q |
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| T |
12106120 |
tttctgtgtt |
12106129 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 190 - 300
Target Start/End: Complemental strand, 10676046 - 10675933
Alignment:
| Q |
190 |
ttggtcaattttgaaatgtcgatgaaggacccttaaattagtattattaattaagagataaatagaaaacatgtt---gaaggtagacactaagtatatg |
286 |
Q |
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| T |
10676046 |
ttggtcacttttgcaatgtcagtgaaggacccttaaattattatcattaattaagagataaatagaaaacatgttgaagaaggtagacactaagtacatg |
10675947 |
T |
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| Q |
287 |
tttagatcagcggt |
300 |
Q |
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| T |
10675946 |
tttagatcagcggt |
10675933 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 111 - 167
Target Start/End: Complemental strand, 10675579 - 10675523
Alignment:
| Q |
111 |
tttgctgcataaggaatgaataaccggttaattttaaaacggtagtgtagcaggcat |
167 |
Q |
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| T |
10675579 |
tttgctgcacaaggaatgtataatcagttaattttaaaagggtagtgttgtaggcat |
10675523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 21 - 83
Target Start/End: Complemental strand, 10116103 - 10116043
Alignment:
| Q |
21 |
tgtgcacaaattaagaaaaatttatccttaattgatttagctttttacttgcatgatcttttt |
83 |
Q |
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| T |
10116103 |
tgtgcacaaattaagaaaaatgtatc-ttaattgatttag-tttttacttgcatgatcttttt |
10116043 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 155 - 225
Target Start/End: Original strand, 405155 - 405225
Alignment:
| Q |
155 |
gtgtagcaggcattggcagacaagatttaggtttgttggtcaattttgaaatgtcgatgaaggacccttaa |
225 |
Q |
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| T |
405155 |
gtgtagtaggcatatgcagacaagcttttggttttttggtcatttttgaaatgtggatgaaggatccttaa |
405225 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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