View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5363_low_8 (Length: 266)

Name: NF5363_low_8
Description: NF5363
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5363_low_8
NF5363_low_8
[»] chr8 (4 HSPs)
chr8 (18-266)||(45548181-45548429)
chr8 (37-83)||(11988308-11988354)
chr8 (37-82)||(29713289-29713334)
chr8 (40-88)||(2669763-2669811)
[»] chr7 (5 HSPs)
chr7 (18-88)||(44613509-44613579)
chr7 (18-88)||(28759876-28759946)
chr7 (18-83)||(48021683-48021748)
chr7 (39-83)||(22515564-22515608)
chr7 (40-88)||(44613396-44613444)
[»] chr4 (8 HSPs)
chr4 (21-88)||(8057127-8057194)
chr4 (18-88)||(212984-213053)
chr4 (18-88)||(41228883-41228953)
chr4 (37-88)||(46175902-46175953)
chr4 (30-80)||(948060-948110)
chr4 (21-83)||(23297423-23297485)
chr4 (18-88)||(46704306-46704375)
chr4 (22-83)||(29877624-29877685)
[»] chr6 (5 HSPs)
chr6 (18-88)||(2040222-2040292)
chr6 (18-88)||(6758607-6758677)
chr6 (18-83)||(23239232-23239297)
chr6 (32-85)||(29623527-29623580)
chr6 (40-88)||(23239362-23239410)
[»] chr2 (6 HSPs)
chr2 (18-88)||(34913426-34913496)
chr2 (18-83)||(21788442-21788507)
chr2 (40-88)||(21788572-21788620)
chr2 (21-83)||(33321351-33321413)
chr2 (19-83)||(755779-755843)
chr2 (15-79)||(15155802-15155866)
[»] chr3 (4 HSPs)
chr3 (32-83)||(33946592-33946643)
chr3 (21-83)||(40581116-40581178)
chr3 (16-81)||(10448761-10448826)
chr3 (18-83)||(34707749-34707814)
[»] chr5 (1 HSPs)
chr5 (21-83)||(22201975-22202037)
[»] chr1 (3 HSPs)
chr1 (18-88)||(46689586-46689656)
chr1 (16-81)||(49971238-49971303)
chr1 (40-88)||(9572707-9572755)


Alignment Details
Target: chr8 (Bit Score: 237; Significance: 1e-131; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 18 - 266
Target Start/End: Original strand, 45548181 - 45548429
Alignment:
Q  18 ttaacaagcttgtgaataaaaaataaaagcgtatttattttcattagttattttgcataagctcaatccaatcggccaaaaggctttctctggtatttac 117  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |    
T  45548181 ttaacaagcttgtgaataaaaaataaaagcgtatttattttcattagttattttgcataagctcaatccaatcggccaaaaggctttctccggtatttcc 45548280  T
Q  118 acgctatttctttcatggatggctttgagatccgacttcaagtctgggactgggaggtgcatgtaacgccacctgcgggcgtagttttgtctatttgaaa 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  45548281 acgctatttctttcatggatggctttgagatccgacttcaagtctgggactgggagatgcatgtaacgccacctgcgggcgtagttttgtctatttgaaa 45548380  T
Q  218 ttgtctttggataactcaaatatgagaaagtaatgtcgataaatcattt 266  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  45548381 ttgtctttggataactcaaatatgagaaagtaatgtcgataaatcattt 45548429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 37 - 83
Target Start/End: Original strand, 11988308 - 11988354
Alignment:
Q  37 aaaataaaagcgtatttattttcattagttattttgcataagctcaa 83  Q
    ||||||||||| ||||||||| ||| ||||||||| |||||||||||    
T  11988308 aaaataaaagcatatttatttacataagttatttttcataagctcaa 11988354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 37 - 82
Target Start/End: Original strand, 29713289 - 29713334
Alignment:
Q  37 aaaataaaagcgtatttattttcattagttattttgcataagctca 82  Q
    ||||||||||| ||||||||| ||| ||||||||| ||||||||||    
T  29713289 aaaataaaagcttatttatttacataagttatttttcataagctca 29713334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 40 - 88
Target Start/End: Original strand, 2669763 - 2669811
Alignment:
Q  40 ataaaagcgtatttattttcattagttattttgcataagctcaatccaa 88  Q
    |||||||| ||||||||||||| || | |||| ||||||||||||||||    
T  2669763 ataaaagcttatttattttcataagctctttttcataagctcaatccaa 2669811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 18 - 88
Target Start/End: Original strand, 44613509 - 44613579
Alignment:
Q  18 ttaacaagcttgtgaataaaaaataaaagcgtatttattttcattagttattttgcataagctcaatccaa 88  Q
    ||||||||||| ||||||| |||||||||| ||||||||| ||| || | |||||||||||||||||||||    
T  44613509 ttaacaagcttatgaataataaataaaagcttatttatttgcataagctgttttgcataagctcaatccaa 44613579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 88
Target Start/End: Original strand, 28759876 - 28759946
Alignment:
Q  18 ttaacaagcttgtgaataaaaaataaaagcgtatttattttcattagttattttgcataagctcaatccaa 88  Q
    ||||||||||| ||||||| |||||||| | | ||| ||||||| |||| |||| ||||| ||||||||||    
T  28759876 ttaacaagcttatgaataataaataaaaactttttttttttcataagttgttttacataaactcaatccaa 28759946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 18 - 83
Target Start/End: Original strand, 48021683 - 48021748
Alignment:
Q  18 ttaacaagcttgtgaataaaaaataaaagcgtatttattttcattagttattttgcataagctcaa 83  Q
    ||||||||||| ||||||| |||||| ||| ||||||||| ||| | || ||||| ||||||||||    
T  48021683 ttaacaagcttatgaataataaataagagcttatttatttgcataaattgttttgtataagctcaa 48021748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 39 - 83
Target Start/End: Original strand, 22515564 - 22515608
Alignment:
Q  39 aataaaagcgtatttattttcattagttattttgcataagctcaa 83  Q
    ||||||||| ||||||||||||| |  ||||||||||||||||||    
T  22515564 aataaaagcttatttattttcataatatattttgcataagctcaa 22515608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 40 - 88
Target Start/End: Complemental strand, 44613444 - 44613396
Alignment:
Q  40 ataaaagcgtatttattttcattagttattttgcataagctcaatccaa 88  Q
    |||||||| ||||||||| ||| || |||||| ||||||||||||||||    
T  44613444 ataaaagcttatttatttgcataagctatttttcataagctcaatccaa 44613396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 21 - 88
Target Start/End: Original strand, 8057127 - 8057194
Alignment:
Q  21 acaagcttgtgaataaaaaataaaagcgtatttattttcattagttattttgcataagctcaatccaa 88  Q
    |||||||| ||||||| |||||||| | ||||| ||| ||||||||||||| ||||||||||||||||    
T  8057127 acaagcttatgaataataaataaaaacttatttttttgcattagttatttttcataagctcaatccaa 8057194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 18 - 88
Target Start/End: Original strand, 212984 - 213053
Alignment:
Q  18 ttaacaagcttgtgaataaaaaataaaagcgtatttattttcattagttattttgcataagctcaatccaa 88  Q
    ||||||||||| ||||||| |||||||| | ||||||||| ||| |||| |||||||||||||||||||||    
T  212984 ttaacaagcttatgaataataaataaaa-cttatttatttgcataagttgttttgcataagctcaatccaa 213053  T

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Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 18 - 88
Target Start/End: Complemental strand, 41228953 - 41228883
Alignment:
Q  18 ttaacaagcttgtgaataaaaaataaaagcgtatttattttcattagttattttgcataagctcaatccaa 88  Q
    ||||||||||| ||||||| |||||||||| ||||||  | ||| || | |||||||||||||||||||||    
T  41228953 ttaacaagcttatgaataataaataaaagcctatttacctgcataagctgttttgcataagctcaatccaa 41228883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 37 - 88
Target Start/End: Complemental strand, 46175953 - 46175902
Alignment:
Q  37 aaaataaaagcgtatttattttcattagttattttgcataagctcaatccaa 88  Q
    |||||||| || ||||||||| ||| ||||||||| ||||||||||||||||    
T  46175953 aaaataaatgcttatttatttacataagttatttttcataagctcaatccaa 46175902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 80
Target Start/End: Complemental strand, 948110 - 948060
Alignment:
Q  30 tgaataaaaaataaaagcgtatttattttcattagttattttgcataagct 80  Q
    ||||||| | |||||||| ||||||||||||| || |||||||||||||||    
T  948110 tgaataatacataaaagcttatttattttcataagctattttgcataagct 948060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 83
Target Start/End: Complemental strand, 23297485 - 23297423
Alignment:
Q  21 acaagcttgtgaataaaaaataaaagcgtatttattttcattagttattttgcataagctcaa 83  Q
    |||| ||| ||||||| | |||||||| ||||||||| ||| || ||||||||||||||||||    
T  23297485 acaaacttatgaataatacataaaagcttatttatttgcataagctattttgcataagctcaa 23297423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 88
Target Start/End: Original strand, 46704306 - 46704375
Alignment:
Q  18 ttaacaagcttgtgaataaaaaataaaagcgtatttattttcattagttattttgcataagctcaatccaa 88  Q
    ||||||||||  ||||||| |||||||||| |||| |||| ||| |||| |||| ||||||||||||||||    
T  46704306 ttaacaagctcatgaataataaataaaagcttatt-atttgcataagttgttttacataagctcaatccaa 46704375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 22 - 83
Target Start/End: Complemental strand, 29877685 - 29877624
Alignment:
Q  22 caagcttgtgaataaaaaataaaagcgtatttattttcattagttattttgcataagctcaa 83  Q
    ||||||| ||||||| | |||||||| ||||||||| ||| | || ||||||||||||||||    
T  29877685 caagcttatgaataatacataaaagcttatttatttgcataaattgttttgcataagctcaa 29877624  T

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Target: chr6 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 18 - 88
Target Start/End: Original strand, 2040222 - 2040292
Alignment:
Q  18 ttaacaagcttgtgaataaaaaataaaagcgtatttattttcattagttattttgcataagctcaatccaa 88  Q
    ||||||| ||| ||||||| |||||||||| |||||||||  || |||| |||||||||||||||||||||    
T  2040222 ttaacaaacttatgaataataaataaaagcttatttatttatataagttgttttgcataagctcaatccaa 2040292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 18 - 88
Target Start/End: Complemental strand, 6758677 - 6758607
Alignment:
Q  18 ttaacaagcttgtgaataaaaaataaaagcgtatttattttcattagttattttgcataagctcaatccaa 88  Q
    ||||||||||| || |||| ||| |||||| ||||||||| ||| |||| |||||||||||||||||||||    
T  6758677 ttaacaagcttatggataataaacaaaagcttatttatttgcataagttgttttgcataagctcaatccaa 6758607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 83
Target Start/End: Complemental strand, 23239297 - 23239232
Alignment:
Q  18 ttaacaagcttgtgaataaaaaataaaagcgtatttattttcattagttattttgcataagctcaa 83  Q
    ||||||||||| ||||||| |||||||||| |||||||||  || ||||||||| |||||||||||    
T  23239297 ttaacaagcttatgaataataaataaaagcttatttatttgtataagttatttttcataagctcaa 23239232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 32 - 85
Target Start/End: Original strand, 29623527 - 29623580
Alignment:
Q  32 aataaaaaataaaagcgtatttattttcattagttattttgcataagctcaatc 85  Q
    ||||| |||||||||  ||||||||| ||| |||| ||||||||||||||||||    
T  29623527 aataataaataaaaggttatttatttgcataagttgttttgcataagctcaatc 29623580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 40 - 88
Target Start/End: Original strand, 23239362 - 23239410
Alignment:
Q  40 ataaaagcgtatttattttcattagttattttgcataagctcaatccaa 88  Q
    |||||||| ||||||||| ||| || |||||| ||||||||||||||||    
T  23239362 ataaaagcttatttatttgcataagctatttttcataagctcaatccaa 23239410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.00000000009; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 18 - 88
Target Start/End: Original strand, 34913426 - 34913496
Alignment:
Q  18 ttaacaagcttgtgaataaaaaataaaagcgtatttattttcattagttattttgcataagctcaatccaa 88  Q
    ||||||| ||| ||||||| | |||||||| ||||||||| ||| || | |||||||||||||||||||||    
T  34913426 ttaacaaacttatgaataatacataaaagcttatttatttgcataagctgttttgcataagctcaatccaa 34913496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 18 - 83
Target Start/End: Complemental strand, 21788507 - 21788442
Alignment:
Q  18 ttaacaagcttgtgaataaaaaataaaagcgtatttattttcattagttattttgcataagctcaa 83  Q
    ||||||||||| ||||||| |||||||||| ||||||||| ||| || | |||||||||| |||||    
T  21788507 ttaacaagcttatgaataataaataaaagcttatttatttgcataagatgttttgcataaactcaa 21788442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 40 - 88
Target Start/End: Original strand, 21788572 - 21788620
Alignment:
Q  40 ataaaagcgtatttattttcattagttattttgcataagctcaatccaa 88  Q
    |||||||| ||||||||| ||| ||||||||| ||||||||||||||||    
T  21788572 ataaaagcttatttatttgcataagttatttttcataagctcaatccaa 21788620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 83
Target Start/End: Original strand, 33321351 - 33321413
Alignment:
Q  21 acaagcttgtgaataaaaaataaaagcgtatttattttcattagttattttgcataagctcaa 83  Q
    |||||||| ||||||| | |||||||| ||||||||| ||  |||| ||||||||||||||||    
T  33321351 acaagcttatgaataagacataaaagcttatttatttgcacaagttgttttgcataagctcaa 33321413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 83
Target Start/End: Original strand, 755779 - 755843
Alignment:
Q  19 taacaagcttgtgaataaaaaataaaagcgtatttattttcattagttattttgcataagctcaa 83  Q
    |||||||||| ||||||| | |||||||| || |||||| | | |||| ||||||||||||||||    
T  755779 taacaagcttctgaataatacataaaagcttaattatttgcgtaagttgttttgcataagctcaa 755843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 15 - 79
Target Start/End: Complemental strand, 15155866 - 15155802
Alignment:
Q  15 tcattaacaagcttgtgaataaaaaataaaagcgtatttattttcattagttattttgcataagc 79  Q
    ||||||||||| || | ||||| | |||||||| ||||||||||||| |||| |||| |||||||    
T  15155866 tcattaacaagattataaataatacataaaagcatatttattttcataagttgttttacataagc 15155802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 32 - 83
Target Start/End: Original strand, 33946592 - 33946643
Alignment:
Q  32 aataaaaaataaaagcgtatttattttcattagttattttgcataagctcaa 83  Q
    ||||| |||||||||| ||||||||| ||| || ||||||||||||||||||    
T  33946592 aataataaataaaagcttatttatttgcataagctattttgcataagctcaa 33946643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 83
Target Start/End: Original strand, 40581116 - 40581178
Alignment:
Q  21 acaagcttgtgaataaaaaataaaagcgtatttattttcattagttattttgcataagctcaa 83  Q
    |||||||| | ||||| | |||||||| ||||||||| ||| |||| ||||||||||||||||    
T  40581116 acaagcttattaataatacataaaagcttatttatttgcataagttgttttgcataagctcaa 40581178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 16 - 81
Target Start/End: Complemental strand, 10448826 - 10448761
Alignment:
Q  16 cattaacaagcttgtgaataaaaaataaaagcgtatttattttcattagttattttgcataagctc 81  Q
    ||||||||||||| | ||||| | ||||| || ||||||||| ||| |||| ||||||||||||||    
T  10448826 cattaacaagcttataaataatacataaaggcatatttatttgcataagttgttttgcataagctc 10448761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 18 - 83
Target Start/End: Original strand, 34707749 - 34707814
Alignment:
Q  18 ttaacaagcttgtgaataaaaaataaaagcgtatttattttcattagttattttgcataagctcaa 83  Q
    ||||||||||| ||||||| | |||||||| ||| ||||| | | |||| ||||||||||||||||    
T  34707749 ttaacaagcttatgaataatacataaaagcttatatatttacgtaagttgttttgcataagctcaa 34707814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 83
Target Start/End: Original strand, 22201975 - 22202037
Alignment:
Q  21 acaagcttgtgaataaaaaataaaagcgtatttattttcattagttattttgcataagctcaa 83  Q
    |||||||| ||||||| | |||||||| ||||||||| ||| || | ||||||||||||||||    
T  22201975 acaagcttatgaataatacataaaagcttatttatttacataagctgttttgcataagctcaa 22202037  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 88
Target Start/End: Original strand, 46689586 - 46689656
Alignment:
Q  18 ttaacaagcttgtgaataaaaaataaaagcgtatttattttcattagttattttgcataagctcaatccaa 88  Q
    ||||||||||  ||||||| |||||||||| | ||||||| ||| |  | |||||||||||||||||||||    
T  46689586 ttaacaagctcatgaataataaataaaagcttttttatttgcataaactgttttgcataagctcaatccaa 46689656  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 16 - 81
Target Start/End: Complemental strand, 49971303 - 49971238
Alignment:
Q  16 cattaacaagcttgtgaataaaaaataaaagcgtatttattttcattagttattttgcataagctc 81  Q
    ||||||||||||| | ||||| ||||||| |  ||||||||| ||| |||| ||||||||||||||    
T  49971303 cattaacaagcttataaataataaataaaggaatatttatttgcataagttgttttgcataagctc 49971238  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 40 - 88
Target Start/End: Complemental strand, 9572755 - 9572707
Alignment:
Q  40 ataaaagcgtatttattttcattagttattttgcataagctcaatccaa 88  Q
    |||||||| ||||||||| ||| || |||||| ||||||||||||||||    
T  9572755 ataaaagcttatttatttgcataagctatttttcataagctcaatccaa 9572707  T

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