View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5364-Insertion-1 (Length: 1078)

Name: NF5364-Insertion-1
Description: NF5364
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5364-Insertion-1
NF5364-Insertion-1
[»] chr1 (4 HSPs)
chr1 (437-676)||(12124900-12125137)
chr1 (686-768)||(12124568-12124650)
chr1 (809-982)||(12124313-12124487)
chr1 (524-609)||(46298941-46299026)
[»] chr7 (4 HSPs)
chr7 (563-774)||(44057541-44057753)
chr7 (526-609)||(2957089-2957172)
chr7 (563-609)||(5078991-5079037)
chr7 (728-777)||(37490969-37491021)
[»] chr5 (1 HSPs)
chr5 (565-640)||(32535339-32535413)
[»] chr4 (2 HSPs)
chr4 (686-772)||(1019033-1019122)
chr4 (562-601)||(37451361-37451400)
[»] chr8 (4 HSPs)
chr8 (559-621)||(32336827-32336889)
chr8 (691-745)||(32336718-32336772)
chr8 (563-621)||(37109473-37109531)
chr8 (691-776)||(41178179-41178267)
[»] chr3 (4 HSPs)
chr3 (563-678)||(26243908-26244020)
chr3 (563-678)||(26121747-26121859)
chr3 (707-776)||(21205564-21205634)
chr3 (691-773)||(54918227-54918312)
[»] chr6 (1 HSPs)
chr6 (570-640)||(5008442-5008511)
[»] chr2 (2 HSPs)
chr2 (728-774)||(681688-681737)
chr2 (728-776)||(37107046-37107095)


Alignment Details
Target: chr1 (Bit Score: 152; Significance: 5e-80; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 152; E-Value: 5e-80
Query Start/End: Original strand, 437 - 676
Target Start/End: Complemental strand, 12125137 - 12124900
Alignment:
Q  437 caccaatgaccaagctcgtgtcattctctttcatcttcatcgttcttttctctttcatctattgaccattctttttgtatattattttctctgttttaaa 536  Q
    |||||||||||||  || ||||||||||||||||||||||| ||||||||||||||||||||| | |||||||||| |||| || |  ||||||||||||    
T  12125137 caccaatgaccaacatc-tgtcattctctttcatcttcatcattcttttctctttcatctattcatcattctttttctatactactccctctgttttaaa 12125039  T
Q  537 ataagtgccactttaacaatacaattttgttttaaaattaatgttacttacacttttcaatgtaaaattattacttcactttcaaattgtaccttttaat 636  Q
    || | || ||||||||||||| |||||||||| ||||| ||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  12125038 atgaatgtcactttaacaataaaattttgtttcaaaataaatgttaattacacttttcaatgtaaaattattacttcacttttaaattgtaccttttaat 12124939  T
Q  637 taatcgagaggtacactatctccaaaacataacatcaata 676  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  12124938 taatcgaga-gtacactatctccaaaacataacatcaata 12124900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 83; E-Value: 8e-39
Query Start/End: Original strand, 686 - 768
Target Start/End: Complemental strand, 12124650 - 12124568
Alignment:
Q  686 gttaatttaataaaatcgtcttgtcttttgacaccatcactacatttcttaatatgtgtaaaaccttaaacgacacttatttt 768  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12124650 gttaatttaataaaatcgtcttgtcttttgacaccatcactacatttcttaatatgtgtaaaaccttaaacgacacttatttt 12124568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 75; E-Value: 5e-34
Query Start/End: Original strand, 809 - 982
Target Start/End: Complemental strand, 12124487 - 12124313
Alignment:
Q  809 tctataattagaaagaggaaacaacaataaatttaaaaaac-aaaatttggagatttaannnnnnnnnnnnnaaggaacaactttatctttctcggatac 907  Q
    ||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||             ||||||||||||||||||||||||||||    
T  12124487 tctataattagaaagaggaaacaacaataaatttaaaaaaataaaatttggagatttaattatttttttt--aaggaacaactttatctttctcggatac 12124390  T
Q  908 tggacaacc-gggctccgaagaagaaataaggaaaataaaaaatgac-attttttawattcaacgtagaaattgaca 982  Q
    || |||||| ||| | ||| ||||||||||||||||||||||||||| |||||||| ||| ||| ||||||| ||||    
T  12124389 tgtacaaccgggggttcgaggaagaaataaggaaaataaaaaatgacaattttttatatttaacatagaaatggaca 12124313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.000000002
Query Start/End: Original strand, 524 - 609
Target Start/End: Complemental strand, 46299026 - 46298941
Alignment:
Q  524 tctctgttttaaaataagtgccactttaacaatacaattttgttttaaaattaatgttacttacacttttcaatgtaaaattatta 609  Q
    |||| ||||||| |||| || | ||||||||||| ||  || ||||||||| ||| | ||||||| ||||||||||||||||||||    
T  46299026 tctccgttttaatataaatgtcgctttaacaataaaaaattattttaaaatgaatatcacttacatttttcaatgtaaaattatta 46298941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 3e-20; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 3e-20
Query Start/End: Original strand, 563 - 774
Target Start/End: Complemental strand, 44057753 - 44057541
Alignment:
Q  563 ttgttttaaaattaatgttacttacacttttcaatgtaaaattattacttcactttcaaattgtaccttttaattaatcgagaggtacactatctccaaa 662  Q
    |||||| ||||| ||||| |||| |||||||||||||| |||||||| || || ||| ||||||||| ||||||| || |||| ||||||||  ||||||    
T  44057753 ttgtttcaaaatgaatgtcacttgcacttttcaatgtagaattattattttac-ttccaattgtaccctttaatttattgaga-gtacactacttccaaa 44057656  T
Q  663 acataacatcaatagtnnnnnnngttaatttaataaaatcgtcttgtcttttgacaccatcactacatttcttaatatgtgt---aaaaccttaaacgac 759  Q
    |||| ||| |||||||       ||  ||||| |||||| ||| |||| ||||||| ||| | ||||||||||||| |||||   |||| ||||||| ||    
T  44057655 acattacaccaatagtaaatgaggtacatttagtaaaattgtcatgtcatttgacatcattattacatttcttaatttgtgtgtaaaaatcttaaacaac 44057556  T
Q  760 acttattttgaaacg 774  Q
    ||| |||||||||||    
T  44057555 actcattttgaaacg 44057541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 526 - 609
Target Start/End: Original strand, 2957089 - 2957172
Alignment:
Q  526 tctgttttaaaataagtgccactttaacaatacaattttgttttaaaattaatgttacttacacttttcaatgtaaaattatta 609  Q
    |||||| |||||| |||| ||||||| ||||| || ||||||||| ||| | ||| | ||| ||||||||||||||||||||||    
T  2957089 tctgttataaaattagtgtcactttatcaataaaaatttgttttagaatgattgtcaattaaacttttcaatgtaaaattatta 2957172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 563 - 609
Target Start/End: Complemental strand, 5079037 - 5078991
Alignment:
Q  563 ttgttttaaaattaatgttacttacacttttcaatgtaaaattatta 609  Q
    |||||||||||| ||| ||| ||||||||||||||||| ||||||||    
T  5079037 ttgttttaaaatgaatattatttacacttttcaatgtagaattatta 5078991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 728 - 777
Target Start/End: Original strand, 37490969 - 37491021
Alignment:
Q  728 catttcttaatatgtgt---aaaaccttaaacgacacttattttgaaacgaat 777  Q
    |||||||||||||||||   |||||||||||||||| |||||||| |||||||    
T  37490969 catttcttaatatgtgtgtaaaaaccttaaacgacatttattttgtaacgaat 37491021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 565 - 640
Target Start/End: Complemental strand, 32535413 - 32535339
Alignment:
Q  565 gttttaaaattaatgttacttacacttttcaatgtaaaattattacttcactttcaaattgtaccttttaattaat 640  Q
    |||||||||| ||||| |||||||||||||||||||||||||||| || | |||| ||||||||||| || |||||    
T  32535413 gttttaaaatgaatgtcacttacacttttcaatgtaaaattattatttta-tttccaattgtaccttctagttaat 32535339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000004
Query Start/End: Original strand, 686 - 772
Target Start/End: Complemental strand, 1019122 - 1019033
Alignment:
Q  686 gttaatttaataaaatcgtcttgtcttttgacaccatcactacatttcttaatatgtgt---aaaaccttaaacgacacttattttgaaa 772  Q
    |||| |||| |||||| ||| |||||||||||||||| | ||||||||| ||| |||||   |||||||||||||||||| |||||||||    
T  1019122 gttagtttagtaaaattgtcatgtcttttgacaccattattacatttctaaatttgtgtgtaaaaaccttaaacgacactcattttgaaa 1019033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 562 - 601
Target Start/End: Original strand, 37451361 - 37451400
Alignment:
Q  562 tttgttttaaaattaatgttacttacacttttcaatgtaa 601  Q
    ||||||||||||| ||||||| ||||||||||||||||||    
T  37451361 tttgttttaaaatgaatgttatttacacttttcaatgtaa 37451400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 39; Significance: 0.000000000002; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 559 - 621
Target Start/End: Complemental strand, 32336889 - 32336827
Alignment:
Q  559 aattttgttttaaaattaatgttacttacacttttcaatgtaaaattattacttcactttcaa 621  Q
    |||||||||||||||||||||| | ||||| ||||||||||| |||||||| || ||||||||    
T  32336889 aattttgttttaaaattaatgtgaattacaattttcaatgtagaattattattttactttcaa 32336827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 691 - 745
Target Start/End: Complemental strand, 32336772 - 32336718
Alignment:
Q  691 tttaataaaatcgtcttgtcttttgacaccatcactacatttcttaatatgtgta 745  Q
    |||| |||||| ||| | |||||| ||||||||| ||||||||||||||||||||    
T  32336772 tttagtaaaattgtcatttcttttaacaccatcattacatttcttaatatgtgta 32336718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 563 - 621
Target Start/End: Complemental strand, 37109531 - 37109473
Alignment:
Q  563 ttgttttaaaattaatgttacttacacttttcaatgtaaaattattacttcactttcaa 621  Q
    |||||||||||| ||||| ||||  ||||||||||||| |||||||| || ||||||||    
T  37109531 ttgttttaaaatgaatgtcacttgtacttttcaatgtagaattattattttactttcaa 37109473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 691 - 776
Target Start/End: Complemental strand, 41178267 - 41178179
Alignment:
Q  691 tttaataaaatcgtcttgtcttttgacaccatcactacatttcttaatatgtgt---aaaaccttaaacgacacttattttgaaacgaa 776  Q
    |||| |||||| ||| | |||||||||| ||| | ||||||||||||| |||||   |||||||||||||||||  ||||||| |||||    
T  41178267 tttagtaaaattgtcatttcttttgacatcattattacatttcttaatttgtgtgtaaaaaccttaaacgacacccattttgagacgaa 41178179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.0000000001; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 563 - 678
Target Start/End: Complemental strand, 26244020 - 26243908
Alignment:
Q  563 ttgttttaaaattaatgttacttacacttttcaatgtaaaattattacttcactttcaaattgtaccttttaattaatcgagaggtacactatctccaaa 662  Q
    |||||||||||| |||| |||| ||| |||||||||||||| ||||| || |||||| ||||||||| | ||||| || || ||||||||||| | | ||    
T  26244020 ttgttttaaaataaatggtactgacagttttcaatgtaaaaatattattttactttc-aattgtaccctctaatttattga-aggtacactattttc-aa 26243924  T
Q  663 acataacatcaatagt 678  Q
    |||| |||||||||||    
T  26243923 acattacatcaatagt 26243908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 563 - 678
Target Start/End: Complemental strand, 26121859 - 26121747
Alignment:
Q  563 ttgttttaaaattaatgttacttacacttttcaatgtaaaattattacttcactttcaaattgtaccttttaattaatcgagaggtacactatctccaaa 662  Q
    |||||||||||| ||||| ||| ||| |||||||||||||| ||||| || |||||| ||||||||| | ||||| || || | ||||||||| | | ||    
T  26121859 ttgttttaaaataaatgtcactgacagttttcaatgtaaaaatattattttactttc-aattgtaccctctaatttattga-atgtacactattttc-aa 26121763  T
Q  663 acataacatcaatagt 678  Q
    |||| |||||||||||    
T  26121762 acattacatcaatagt 26121747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 707 - 776
Target Start/End: Original strand, 21205564 - 21205634
Alignment:
Q  707 tgtcttttgacaccatcactacatttcttaatatgtgt-aaaaccttaaacgacacttattttgaaacgaa 776  Q
    ||||| || ||| ||||| | ||||||||||||||||| |||| ||||||||||||| ||||| |||||||    
T  21205564 tgtctatttacaacatcattgcatttcttaatatgtgtaaaaatcttaaacgacactcattttaaaacgaa 21205634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 691 - 773
Target Start/End: Original strand, 54918227 - 54918312
Alignment:
Q  691 tttaataaaatcgtcttgtcttttgacaccatcactacatttcttaat--atgtgtaaaa-ccttaaacgacacttattttgaaac 773  Q
    |||| |||||| ||| |||||||||||| ||| | || ||||||||||  |||||||||| |||||||||| ||| ||||||||||    
T  54918227 tttagtaaaattgtcatgtcttttgacatcattattaaatttcttaatttatgtgtaaaaaccttaaacgatactcattttgaaac 54918312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 570 - 640
Target Start/End: Complemental strand, 5008511 - 5008442
Alignment:
Q  570 aaaattaatgttacttacacttttcaatgtaaaattattacttcactttcaaattgtaccttttaattaat 640  Q
    ||||||||||| |||| |||||||||||||| |||||||| || |||||| ||||||||| | ||||||||    
T  5008511 aaaattaatgtcacttgcacttttcaatgtagaattattattttactttc-aattgtaccatctaattaat 5008442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 728 - 774
Target Start/End: Complemental strand, 681737 - 681688
Alignment:
Q  728 catttcttaatatgtgt---aaaaccttaaacgacacttattttgaaacg 774  Q
    |||||||||||||||||   |||||||||||||||||| |||||||||||    
T  681737 catttcttaatatgtgtgcaaaaaccttaaacgacactcattttgaaacg 681688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 728 - 776
Target Start/End: Original strand, 37107046 - 37107095
Alignment:
Q  728 catttcttaatatgtgt-aaaaccttaaacgacacttattttgaaacgaa 776  Q
    ||||||||||| ||||| |||||||||||||||||| ||| |||||||||    
T  37107046 catttcttaatgtgtgtcaaaaccttaaacgacactcattgtgaaacgaa 37107095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University