View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5364_high_11 (Length: 332)
Name: NF5364_high_11
Description: NF5364
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5364_high_11 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 265; Significance: 1e-148; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 20 - 320
Target Start/End: Original strand, 23368798 - 23369098
Alignment:
| Q |
20 |
gacatcatcaacatacattgatgcaatatgtagtgccgcaagttctaaatacaaccaaaaagggacaaaaaactagagttcaaaagagaaggagatttaa |
119 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23368798 |
gacatcatcaacatacactgatgcaatatgtagtgccgctagttctaaatacaaccaaaaagggacaaaaaactagagttcaaaagagaaggagatttaa |
23368897 |
T |
|
| Q |
120 |
agagcttcctattacaagacttaattttgattcagtatttgaagaaggtggtccatcatcaaactcatcagccaatggtaattgttgaatattcaacttt |
219 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
23368898 |
agagcttcctattacaagacttaattttgattcattatttgaagaaggtggtccatcatcaaactcatcagccaatggtaattgttgaatattcaacttt |
23368997 |
T |
|
| Q |
220 |
ctatattacacaaataatagttaaattaatacactgcctaacaggggttaatcaagaaaattgcaatttggatgccttgaaagtagatatatatgatgat |
319 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||| | |||||| |||||||||| |||||||||||||| ||||||||||||||||||||| |
|
|
| T |
23368998 |
ctatattacacaaataatagttaaattaatacattgcctaacatgtgttaattaagaaaattgtaatttggatgccttcaaagtagatatatatgatgat |
23369097 |
T |
|
| Q |
320 |
g |
320 |
Q |
| |
|
| |
|
|
| T |
23369098 |
g |
23369098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University