View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5364_high_8 (Length: 336)
Name: NF5364_high_8
Description: NF5364
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5364_high_8 |
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Alignment Details
Target: chr3 (Bit Score: 300; Significance: 1e-169; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 300; E-Value: 1e-169
Query Start/End: Original strand, 1 - 325
Target Start/End: Original strand, 2528983 - 2529307
Alignment:
| Q |
1 |
taacaaaagggtgagtgagatcaaacataccaacccaacacaaaacctgcatttgtttcaccaatgtagtttctcaaagttcaattttttataaccatat |
100 |
Q |
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| T |
2528983 |
taacaaaagggtgagtgagatcaaacataccaacccaacacaaaacctgcatttgtttcaccaatgtagtttctcaaagttcaattttttataaccatat |
2529082 |
T |
|
| Q |
101 |
gtaatacccaaaagagcaaaagagtgtgttttaagacaaaatatttattggnnnnnnnttatcaagaaaataaatagaatgatgaaaattgaaaagtacc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
2529083 |
gtaatacccaaaagagcaaaagagtgtgttttaagacaaaatatttattggaaaaaaattatcaagaaaataaatagaatgatgaaaattgaaaagtacc |
2529182 |
T |
|
| Q |
201 |
ttatgagtgtgagacaccgatctgagaaagtgaatgaatgaacaaagcaatgtgattaaggaacaagatcaacagtgtgagaaaaactaagttgataaac |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2529183 |
ttatgagtgtgagacaccgatctgagaaagtgaatgaatgaacaaagcaatgtgagtaaggaacaagatcaacagtgtgagaaaaactaagttgataaac |
2529282 |
T |
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| Q |
301 |
aaacaaccttcacaactgtgtctgt |
325 |
Q |
| |
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||||||||||||||||||||||||| |
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| T |
2529283 |
aaacaaccttcacaactgtgtctgt |
2529307 |
T |
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