View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5365-Insertion-1 (Length: 313)
Name: NF5365-Insertion-1
Description: NF5365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5365-Insertion-1 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 7 - 313
Target Start/End: Original strand, 4680157 - 4680465
Alignment:
| Q |
7 |
atattaagcattttgtgaattatttgagtcagggggaggcaatgagatagtcatataataacnnnnnnnn---ttgtatatagtcaaagaatatatttat |
103 |
Q |
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| T |
4680157 |
atattaagcattttgtgaattatttgagtcagggggaggcaatgagatagtcatataataacaaaaaaaaaaattgtatatagtcaaagaatatatatat |
4680256 |
T |
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| Q |
104 |
tataggaagatatttgaaannnnnnnnnnnnnnnnncatagtgaacaaaactattattcaattttggtctcatcattagtcgtgtgtcccagttattttc |
203 |
Q |
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| T |
4680257 |
tataggaagatatttgacatttttttcttcttttttcatagtgaacaaa-ctattattcaattttggtctcatcattagtcgtgtgtcccagttattttc |
4680355 |
T |
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| Q |
204 |
tctttggacaataaacgtcagggtgggttgttttgttgtaacaatagacaagttttgtgtaatctaatgtattgatttgtacaatcaacttttattcttg |
303 |
Q |
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| T |
4680356 |
tctttggacaataaacgtcagggtgggttgttttgttgtaacaatagacaagttttgtgtaatctaatgtattgatttgtacaatcaacttttattcttg |
4680455 |
T |
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| Q |
304 |
agccatacat |
313 |
Q |
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| T |
4680456 |
agccatacat |
4680465 |
T |
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