View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5365-Insertion-2 (Length: 991)
Name: NF5365-Insertion-2
Description: NF5365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5365-Insertion-2 |
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| [»] scaffold0181 (3 HSPs) |
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Alignment Details
Target: scaffold0181 (Bit Score: 100; Significance: 6e-49; HSPs: 3)
Name: scaffold0181
Description:
Target: scaffold0181; HSP #1
Raw Score: 100; E-Value: 6e-49
Query Start/End: Original strand, 774 - 984
Target Start/End: Complemental strand, 7445 - 7231
Alignment:
| Q |
774 |
atgtattcatttgaaacaattagttattttgccaccgagcatctgaagtaagttgattcaaatgaatctcgcgtcgnnnnnnnaggaatggagatgtatg |
873 |
Q |
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| T |
7445 |
atgtatgcatttgaaacaatttgttattttgccaccgagcatctcaagtaagctgattcaa-tgaatctcgcgtcgttttct-aggaatggagatgtatg |
7348 |
T |
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| Q |
874 |
ttgatggataggtgg-----agttacatctaaatcataaaaagtaaacgaacgattactagggaagcatacatgaaaatattttttgaatactaat-cta |
967 |
Q |
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| T |
7347 |
ttgatggataggtggggtggagttacatctaaatcataaaaaataaacgaacgattactaggaaacattacatgaaaatat-ttttgaatgctaatccta |
7249 |
T |
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| Q |
968 |
gcac-actttctctatct |
984 |
Q |
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| T |
7248 |
gcacaactttctctatct |
7231 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0181; HSP #2
Raw Score: 95; E-Value: 6e-46
Query Start/End: Original strand, 8 - 102
Target Start/End: Complemental strand, 7707 - 7613
Alignment:
| Q |
8 |
attatgtctatttcccgcacctttttgtaagtattggacacgattcattcggaacaaaatgatgtaagtaaatgtgttggaagccaactcagagc |
102 |
Q |
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| T |
7707 |
attatgtctatttcccgcacctttttgtaagtattggacacgattcattcggaacaaaatgatgtaagtaaatgtgttggaagccaactcagagc |
7613 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0181; HSP #3
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 167 - 316
Target Start/End: Complemental strand, 7598 - 7443
Alignment:
| Q |
167 |
aacagtgagttgcaggaggactttctaaagttaattgctaggagagaaacattatgctatgcaagctaagacagtttcaagaaatatcagaagacatatg |
266 |
Q |
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| T |
7598 |
aacagtgagttgcaggaggactttctaaagttaattgctaggagaaaaacagcctgctatgcaagctaagacagtttcaagaaatatcagaagac--atg |
7501 |
T |
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| Q |
267 |
gctttttccttcat--------cctcgattcgctaggcgagcatcaatgcgcctaatg |
316 |
Q |
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| T |
7500 |
gcttttccctccattgaagaaagcttgattcgctaggcgagcatcaatacgcctaatg |
7443 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 432 - 502
Target Start/End: Original strand, 9199208 - 9199278
Alignment:
| Q |
432 |
ctatggagcttggatttaagcttgttgatgcttttttaacacatgtcaaccttctcttgttagttatgctc |
502 |
Q |
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| T |
9199208 |
ctatggagcttagattcaagcttgttgattcttccccaacacctatcaaccttatcttgttagttatgctc |
9199278 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 436 - 509
Target Start/End: Original strand, 28609010 - 28609082
Alignment:
| Q |
436 |
ggagcttggatttaagcttgttgatgcttttttaacacatgtcaaccttctcttgttagttatgctcgacatgg |
509 |
Q |
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| T |
28609010 |
ggagcttggattcaagctt-ttgatgcttctccaacatctttcaaccttctcttgttagttatgttctacatgg |
28609082 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 297 - 383
Target Start/End: Complemental strand, 50050812 - 50050722
Alignment:
| Q |
297 |
gagcatcaatgcgcctaatgaaccttaacttgcagaaacattata----gagttgtaaatagattttctcattttcatcactcataattta |
383 |
Q |
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| T |
50050812 |
gagcatcaatgcgcctatcaaaccttaacttgcagaaatattatatttagagttgtaatacaattttctcatttttatcacttgtaattta |
50050722 |
T |
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