View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5365-Insertion-3 (Length: 746)
Name: NF5365-Insertion-3
Description: NF5365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5365-Insertion-3 |
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Alignment Details
Target: chr4 (Bit Score: 336; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 28 - 419
Target Start/End: Original strand, 56160299 - 56160690
Alignment:
| Q |
28 |
tgagtgcttgcactactacgatgatgaaatctccagttgtggttgtggttttattgggttcaagaaaagccaagtgtttgattacaatttcgg------c |
121 |
Q |
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| T |
56160299 |
tgagtgcttgcactactacgatgatgaaatctccagttgtggttgtggttttattgggttcaagaaaagccaagtatttgattacaatttcggagacgac |
56160398 |
T |
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| Q |
122 |
atcgatgatggtgattcagaagagctgtttgagataaatatgaagaaggaaagtagattggattcaataagagaagaagagtggtgtgagagcagtactg |
221 |
Q |
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| T |
56160399 |
gacgatgatggtgattcagaagagctgtttgagataaatatgaagaaggaaagtagattggattcaataagagaagaagagtggtgtgagagcagtactg |
56160498 |
T |
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| Q |
222 |
tgttctctatagatatacacaattatttagatgatgttgtttatgtggcagtgggaacaaatattaatattaatggtggaagttcaagcatggaagcact |
321 |
Q |
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| T |
56160499 |
tgttctctctagatatacacaattatttagatgatgttgtttatgtggcagtgggaaca------aatattaatggtggaagttcaagcatggaagcact |
56160592 |
T |
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| Q |
322 |
ttcatggaccttgaaacatgccgtgacaccagaaacaactactgtttatctcctacacgttttccctcaagtcaaactaattccaactccatgtaact |
419 |
Q |
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| T |
56160593 |
ttcatggaccttgaaacatgccgtgacaccagaaacaactactgtttatctcctacacgttttccctcaagtcaaactaattccaactccatgtaact |
56160690 |
T |
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