View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5365-Insertion-5 (Length: 502)

Name: NF5365-Insertion-5
Description: NF5365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5365-Insertion-5
NF5365-Insertion-5
[»] chr5 (21 HSPs)
chr5 (7-490)||(27146670-27147145)
chr5 (212-330)||(591217-591335)
chr5 (223-330)||(23129349-23129455)
chr5 (182-330)||(40872213-40872353)
chr5 (211-330)||(42265430-42265549)
chr5 (212-331)||(39046931-39047049)
chr5 (210-330)||(41520655-41520778)
chr5 (206-310)||(8415679-8415783)
chr5 (210-330)||(13978626-13978745)
chr5 (218-329)||(40458940-40459050)
chr5 (209-296)||(27016663-27016750)
chr5 (230-333)||(1820255-1820359)
chr5 (231-330)||(4377948-4378046)
chr5 (212-296)||(8761922-8762006)
chr5 (208-312)||(18988744-18988848)
chr5 (236-316)||(24041030-24041110)
chr5 (212-256)||(36486906-36486950)
chr5 (210-260)||(4641513-4641562)
chr5 (237-285)||(14042483-14042531)
chr5 (234-314)||(14475009-14475089)
chr5 (213-285)||(35395184-35395256)
[»] chr6 (13 HSPs)
chr6 (208-330)||(24797404-24797526)
chr6 (208-332)||(29407994-29408119)
chr6 (212-310)||(22020534-22020635)
chr6 (233-310)||(22055031-22055108)
chr6 (232-330)||(9975045-9975143)
chr6 (211-330)||(10345987-10346106)
chr6 (209-252)||(34185097-34185140)
chr6 (209-296)||(7465469-7465556)
chr6 (204-318)||(5678476-5678590)
chr6 (209-316)||(31702747-31702854)
chr6 (212-254)||(2086803-2086845)
chr6 (215-256)||(32254209-32254250)
chr6 (298-330)||(17115201-17115233)
[»] chr7 (14 HSPs)
chr7 (208-330)||(5248626-5248748)
chr7 (208-330)||(17883306-17883428)
chr7 (208-330)||(26402775-26402897)
chr7 (208-330)||(47405223-47405345)
chr7 (207-330)||(26804012-26804133)
chr7 (208-319)||(33899740-33899851)
chr7 (212-310)||(6387966-6388064)
chr7 (266-330)||(41514284-41514348)
chr7 (246-291)||(39960413-39960458)
chr7 (217-260)||(45869032-45869075)
chr7 (212-254)||(17302886-17302928)
chr7 (212-285)||(8170026-8170099)
chr7 (212-285)||(33887890-33887963)
chr7 (217-253)||(46916100-46916136)
[»] chr2 (22 HSPs)
chr2 (208-330)||(18375053-18375175)
chr2 (212-330)||(27501728-27501846)
chr2 (212-310)||(44330642-44330743)
chr2 (233-310)||(44365416-44365493)
chr2 (229-330)||(63897-63995)
chr2 (212-292)||(32493104-32493183)
chr2 (216-315)||(9153483-9153581)
chr2 (210-296)||(6761753-6761839)
chr2 (208-316)||(13538387-13538495)
chr2 (212-260)||(44769133-44769181)
chr2 (206-307)||(15120062-15120164)
chr2 (206-244)||(43745613-43745651)
chr2 (211-296)||(8964386-8964471)
chr2 (267-318)||(5961968-5962019)
chr2 (237-316)||(21738240-21738319)
chr2 (235-313)||(24792007-24792086)
chr2 (212-319)||(33962947-33963054)
chr2 (238-284)||(13811060-13811106)
chr2 (212-285)||(18053055-18053128)
chr2 (212-261)||(37082262-37082311)
chr2 (207-259)||(20064901-20064953)
chr2 (211-311)||(24765329-24765429)
[»] chr8 (23 HSPs)
chr8 (211-326)||(34336470-34336585)
chr8 (212-330)||(33650003-33650121)
chr8 (208-326)||(44254124-44254242)
chr8 (217-321)||(15271018-15271122)
chr8 (229-330)||(42704317-42704418)
chr8 (208-330)||(38236250-38236364)
chr8 (212-321)||(9774741-9774851)
chr8 (177-317)||(44042505-44042637)
chr8 (212-316)||(39691121-39691225)
chr8 (212-284)||(43429684-43429756)
chr8 (209-316)||(41106005-41106112)
chr8 (209-279)||(28460036-28460106)
chr8 (208-256)||(4166486-4166534)
chr8 (211-318)||(10335027-10335135)
chr8 (208-279)||(8785327-8785398)
chr8 (209-316)||(12002259-12002366)
chr8 (209-256)||(45368790-45368837)
chr8 (209-319)||(1876486-1876596)
chr8 (212-254)||(36782832-36782874)
chr8 (209-317)||(37813410-37813517)
chr8 (217-281)||(25382622-25382687)
chr8 (211-276)||(38167439-38167504)
chr8 (212-316)||(6073225-6073329)
[»] chr3 (24 HSPs)
chr3 (178-326)||(32734650-32734790)
chr3 (211-308)||(52299036-52299133)
chr3 (212-331)||(53641666-53641785)
chr3 (208-332)||(53605645-53605769)
chr3 (208-330)||(4275200-4275322)
chr3 (212-326)||(11465622-11465736)
chr3 (208-292)||(52380856-52380940)
chr3 (209-279)||(17517545-17517616)
chr3 (212-326)||(30364049-30364162)
chr3 (212-283)||(53040464-53040535)
chr3 (215-261)||(47915016-47915062)
chr3 (234-296)||(53433213-53433275)
chr3 (212-253)||(23554743-23554784)
chr3 (212-260)||(2831542-2831590)
chr3 (215-283)||(13804888-13804956)
chr3 (209-296)||(41571594-41571682)
chr3 (291-331)||(52543894-52543934)
chr3 (211-254)||(25299106-25299149)
chr3 (238-285)||(46711952-46711999)
chr3 (217-283)||(31294370-31294436)
chr3 (211-256)||(3973807-3973852)
chr3 (211-256)||(4009553-4009598)
chr3 (209-285)||(30463995-30464071)
chr3 (212-256)||(53766759-53766803)
[»] chr1 (26 HSPs)
chr1 (208-330)||(3483031-3483153)
chr1 (217-330)||(25670764-25670877)
chr1 (208-330)||(43492121-43492244)
chr1 (212-330)||(45925487-45925606)
chr1 (217-330)||(698819-698932)
chr1 (211-331)||(44958299-44958417)
chr1 (212-330)||(28188617-28188734)
chr1 (212-330)||(30494053-30494172)
chr1 (212-330)||(49003643-49003762)
chr1 (231-332)||(5224872-5224973)
chr1 (230-330)||(31822401-31822501)
chr1 (209-296)||(4039629-4039716)
chr1 (209-296)||(6983017-6983104)
chr1 (208-283)||(51681631-51681706)
chr1 (219-279)||(29523601-29523661)
chr1 (210-318)||(40203083-40203191)
chr1 (211-285)||(34445663-34445737)
chr1 (210-260)||(46803508-46803558)
chr1 (212-281)||(11411009-11411078)
chr1 (239-296)||(17112728-17112785)
chr1 (206-239)||(36331666-36331699)
chr1 (235-264)||(50470759-50470788)
chr1 (213-285)||(31652619-31652690)
chr1 (209-285)||(40377034-40377110)
chr1 (212-260)||(43512772-43512820)
chr1 (209-285)||(45584531-45584607)
[»] chr4 (41 HSPs)
chr4 (205-330)||(21988455-21988581)
chr4 (160-326)||(28695717-28695875)
chr4 (212-323)||(46088516-46088627)
chr4 (177-332)||(5047172-5047319)
chr4 (206-330)||(46521493-46521617)
chr4 (212-329)||(20180217-20180334)
chr4 (229-330)||(54495493-54495594)
chr4 (213-331)||(33266811-33266930)
chr4 (235-321)||(30161349-30161435)
chr4 (210-330)||(24753920-24754041)
chr4 (217-330)||(25751694-25751807)
chr4 (210-292)||(48079296-48079377)
chr4 (208-304)||(20176583-20176679)
chr4 (212-303)||(49360039-49360130)
chr4 (208-292)||(49587756-49587841)
chr4 (210-330)||(20787387-20787506)
chr4 (211-311)||(23135445-23135545)
chr4 (239-330)||(5091836-5091926)
chr4 (211-304)||(41690168-41690263)
chr4 (212-310)||(34124531-34124628)
chr4 (256-330)||(10042885-10042959)
chr4 (209-308)||(23016237-23016336)
chr4 (209-296)||(53919860-53919947)
chr4 (298-330)||(23135407-23135439)
chr4 (211-319)||(41370172-41370280)
chr4 (211-319)||(49011887-49011995)
chr4 (211-254)||(949951-949994)
chr4 (212-283)||(40071304-40071375)
chr4 (208-283)||(53737834-53737909)
chr4 (212-254)||(8607676-8607718)
chr4 (211-317)||(19652627-19652733)
chr4 (206-256)||(31655492-31655542)
chr4 (234-283)||(39279209-39279258)
chr4 (217-258)||(41415816-41415857)
chr4 (210-279)||(51291079-51291148)
chr4 (236-281)||(52014590-52014635)
chr4 (213-281)||(2818355-2818423)
chr4 (212-308)||(12618709-12618805)
chr4 (211-243)||(14964322-14964354)
chr4 (236-296)||(19597177-19597237)
chr4 (208-256)||(50131051-50131099)
[»] scaffold0018 (2 HSPs)
scaffold0018 (211-310)||(48773-48872)
scaffold0018 (212-254)||(67675-67717)
[»] scaffold0019 (1 HSPs)
scaffold0019 (208-292)||(67447-67531)
[»] scaffold0062 (1 HSPs)
scaffold0062 (209-254)||(2980-3025)
[»] scaffold0717 (1 HSPs)
scaffold0717 (213-254)||(5030-5071)
[»] scaffold0036 (1 HSPs)
scaffold0036 (216-276)||(88236-88296)
[»] scaffold0172 (1 HSPs)
scaffold0172 (208-283)||(13456-13531)
[»] scaffold0027 (1 HSPs)
scaffold0027 (208-281)||(122507-122580)
[»] scaffold0262 (1 HSPs)
scaffold0262 (213-277)||(17536-17600)


Alignment Details
Target: chr5 (Bit Score: 322; Significance: 0; HSPs: 21)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 322; E-Value: 0
Query Start/End: Original strand, 7 - 490
Target Start/End: Original strand, 27146670 - 27147145
Alignment:
Q  7 agaaaaaagattttacaccgtcagtgtataatagttaaattacgtttatttaacatctaattaaaaagtcatgcaccacatacgattgaggctatcattg 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||  |||||    
T  27146670 agaaaaaagattttacaccgtcagtgtataatagttaaattacgtttatttaacatctaattaaaaagtcatgcaccacttacgattgagactgccattg 27146769  T
Q  107 aacatattcatgaaatgtggctccttaatcttacgaagaaaaacattactaacattaattattttattatgggttttgttaacgagtgccctaagggttt 206  Q
    |||||||||||| |||||||||  |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||           
T  27146770 aacatattcatggaatgtggcttgttaatcttaccaagaaaaacattactaacattaattattttattatgggttttgttaacgagtccccta------- 27146862  T
Q  207 tagggcactctttaaggattcctaataaagaaattattctttaaaaaagtcaaaaactctaatttccaatgcattgatttcataaattttgacaaaaact 306  Q
     | ||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||    
T  27146863 -aaggcactctttaaggatttctaataaagaaattattctttaaaaaagttaaaaactctaatttccaatgcattgatttcataaactttgacaaaaact 27146961  T
Q  307 tactatttaaagttactaaacaatacaatgccctgtattaagggcattggttaatatttccctt----------ttattgtatcataattaaaaactaaa 396  Q
    |||||||||||||||||||     |||||||||     |||||||||| ||||| ||||| |||          ||||||||||||||||||||||||||    
T  27146962 tactatttaaagttactaa-----acaatgccc-----taagggcatttgttaacatttcacttttattatttattattgtatcataattaaaaactaaa 27147051  T
Q  397 aatggggagagtgcatgttgaaatatgttgttttaccatctaaacagtaatacacaataatttaagaaaaattaggcaaaaaatattaataatc 490  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  27147052 aatggggagagtgcatgttgaaatatgttgttttaccatctaaacagtaatacacaataatttaagataaattaggcaaaaaatattaataatc 27147145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 212 - 330
Target Start/End: Complemental strand, 591335 - 591217
Alignment:
Q  212 cactctttaaggattcctaataaagaaattattctttaaaaaagtcaaaaactctaatttccaatgcattgatttcataaattttgacaaaaacttacta 311  Q
    ||||||||||||||| |||||||||||||||||||||||||||||| ||||||  |||||||||||||||||||||||||| ||||||||||||||||||    
T  591335 cactctttaaggatttctaataaagaaattattctttaaaaaagtcgaaaacttcaatttccaatgcattgatttcataaactttgacaaaaacttacta 591236  T
Q  312 tttaaagttactaaacaat 330  Q
    |||||||||||||||||||    
T  591235 tttaaagttactaaacaat 591217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 223 - 330
Target Start/End: Original strand, 23129349 - 23129455
Alignment:
Q  223 gattcctaataaagaaattattctttaaaaaagtcaaaaactctaatttccaatgcattgatttcataaattttgacaaaaacttactatttaaagttac 322  Q
    |||||||||||||||||||||| ||||||| |||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  23129349 gattcctaataaagaaattattttttaaaa-agtcaaaaactccaatttccaatgcattgatttcataaactttgacaaaaacttactatttaaagttac 23129447  T
Q  323 taaacaat 330  Q
    ||||||||    
T  23129448 taaacaat 23129455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 182 - 330
Target Start/End: Original strand, 40872213 - 40872353
Alignment:
Q  182 ttgttaacgagtgccctaagggttttagggcactctttaaggattcctaataaagaaattattctttaaaaaagtcaaaaactctaatttccaatgcatt 281  Q
    |||||||||||||||||||||||        |||||||||| | | |||||||||||||||||||||||||| || |||||||| |||||||||||||||    
T  40872213 ttgttaacgagtgccctaagggt--------actctttaagaaattctaataaagaaattattctttaaaaaggttaaaaactccaatttccaatgcatt 40872304  T
Q  282 gatttcataaattttgacaaaaacttactatttaaagttactaaacaat 330  Q
    ||||||||||| ||||| |||||||||||||||||||||||||||||||    
T  40872305 gatttcataaactttgataaaaacttactatttaaagttactaaacaat 40872353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 211 - 330
Target Start/End: Original strand, 42265430 - 42265549
Alignment:
Q  211 gcactctttaaggattcctaataaagaaattattctttaaaaaagtcaaaaactctaatttccaatgcattgatttcataaattttgacaaaaacttact 310  Q
    ||||||||||||||||| ||||||| |||||||||||||||||||||||||| |  ||||| |||||||||||||||||||| || ||||||||||||||    
T  42265430 gcactctttaaggattcttaataaaaaaattattctttaaaaaagtcaaaaatttcaattttcaatgcattgatttcataaacttagacaaaaacttact 42265529  T
Q  311 atttaaagttactaaacaat 330  Q
    || |||||||||||||||||    
T  42265530 atataaagttactaaacaat 42265549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 212 - 331
Target Start/End: Original strand, 39046931 - 39047049
Alignment:
Q  212 cactctttaaggattcctaataaagaaattattctttaaaaaagtcaaaaactctaatttccaatgcattgatttcataaattttgacaaaaacttacta 311  Q
    |||||||||||||||| ||||||| ||||||||||||||||| || ||||||| |||||| |||||||||||||||||||| ||||| ||||| | ||||    
T  39046931 cactctttaaggattcttaataaa-aaattattctttaaaaacgttaaaaactttaattttcaatgcattgatttcataaactttgagaaaaattaacta 39047029  T
Q  312 tttaaagttactaaacaata 331  Q
    ||||||||||||||| ||||    
T  39047030 tttaaagttactaaataata 39047049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 210 - 330
Target Start/End: Original strand, 41520655 - 41520778
Alignment:
Q  210 ggcactctttaaggattcctaataaaga---aattattctttaaaaaagtcaaaaactctaatttccaatgcattgatttcataaattttgacaaaaact 306  Q
    ||||||||||||||||||  |||||| |   ||| ||||||||||||||| |||||||| |||||||||||||||||||| ||||| ||||| |||||||    
T  41520655 ggcactctttaaggattctaaataaatagtaaatcattctttaaaaaagttaaaaactccaatttccaatgcattgattttataaactttgataaaaact 41520754  T
Q  307 tactatttaaagttactaaacaat 330  Q
    ||||||||||||||| ||||||||    
T  41520755 tactatttaaagttattaaacaat 41520778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 206 - 310
Target Start/End: Original strand, 8415679 - 8415783
Alignment:
Q  206 ttagggcactctttaaggattcctaataaagaaattattctttaaaaaagtcaaaaactctaatttccaatgcattgatttcataaattttgacaaaaac 305  Q
    |||| |||||||| ||||||||||||||||| |||||||||||||||| || |||||||  |||||||||| ||||||||||||||| ||||||||||||    
T  8415679 ttagagcactcttgaaggattcctaataaaggaattattctttaaaaaggttaaaaacttcaatttccaatacattgatttcataaactttgacaaaaac 8415778  T
Q  306 ttact 310  Q
    |||||    
T  8415779 ttact 8415783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 210 - 330
Target Start/End: Complemental strand, 13978745 - 13978626
Alignment:
Q  210 ggcactctttaaggattcctaataaagaaattattctttaaaaaagtcaaaaactctaatttccaatgcattgatttcataaattttgacaaaaacttac 309  Q
    |||||| |||||||||| | |||||||||||||||  |||||||||| |||||||  |||||||||||||||||||||||||| |||||| |||||||||    
T  13978745 ggcactttttaaggatttccaataaagaaattatttcttaaaaaagttaaaaacttcaatttccaatgcattgatttcataaactttgac-aaaacttac 13978647  T
Q  310 tatttaaagttactaaacaat 330  Q
    |||||||| ||| ||||||||    
T  13978646 tatttaaaattattaaacaat 13978626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 218 - 329
Target Start/End: Original strand, 40458940 - 40459050
Alignment:
Q  218 ttaaggattcctaataaagaaattattctttaaaaaagtcaaaaactctaatttccaatgcattgatttcataaattttgacaaaaacttactatttaaa 317  Q
    ||||| |||| | ||||| ||||||||||||||||| || |||||||| |||||||||||||||||||||||||| ||||||||||||||||| ||||||    
T  40458940 ttaagaattcttgataaaaaaattattctttaaaaa-gttaaaaactccaatttccaatgcattgatttcataaactttgacaaaaacttactctttaaa 40459038  T
Q  318 gttactaaacaa 329  Q
    |||| |||||||    
T  40459039 gttattaaacaa 40459050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 209 - 296
Target Start/End: Original strand, 27016663 - 27016750
Alignment:
Q  209 gggcactctttaaggattcctaataaagaaattattctttaaaaaagtcaaaaactctaatttccaatgcattgatttcataaatttt 296  Q
    |||||||||||||| ||||| ||  ||||||||||||  ||||||||||||||| |  |||||||||||||| |||| ||| ||||||    
T  27016663 gggcactctttaagcattccaaaagaagaaattattccataaaaaagtcaaaaatttcaatttccaatgcatcgattacattaatttt 27016750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 230 - 333
Target Start/End: Original strand, 1820255 - 1820359
Alignment:
Q  230 aataaagaaattattctttaaaaaagtcaaaaactctaatttccaatgcattgatttcataaattttgacaaaaac-ttactatttaaagttactaaaca 328  Q
    |||||||||| ||||||||||||| || ||||| |  || ||  ||| |||||||| | |||| ||| |||||||  |||||||||||||||||||||||    
T  1820255 aataaagaaaatattctttaaaaaggttaaaaatttcaacttttaatacattgattacgtaaactttaacaaaaaaattactatttaaagttactaaaca 1820354  T
Q  329 ataca 333  Q
    |||||    
T  1820355 ataca 1820359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 231 - 330
Target Start/End: Complemental strand, 4378046 - 4377948
Alignment:
Q  231 ataaagaaattattctttaaaaaagtcaaaaactctaatttccaatgcattgatttcataaattttgacaaaaacttactatttaaagttactaaacaat 330  Q
    ||||||||||||||  |||||||| | ||||||| |||||||||||| |||  || |||||| ||| ||||||||  ||| ||||| |||||||||||||    
T  4378046 ataaagaaattatttcttaaaaaaattaaaaactttaatttccaatgtattagttacataaactttaacaaaaacaaact-tttaaggttactaaacaat 4377948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 212 - 296
Target Start/End: Original strand, 8761922 - 8762006
Alignment:
Q  212 cactctttaaggattcctaataaagaaattattctttaaaaaagtcaaaaactctaatttccaatgcattgatttcataaatttt 296  Q
    ||||||||||||||||  || |||||||||||||| ||||||||| ||| | |  ||||| ||||| ||||||  ||||||||||    
T  8761922 cactctttaaggattctaaaaaaagaaattattctataaaaaagttaaatatttcaattttcaatgtattgatgacataaatttt 8762006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 208 - 312
Target Start/End: Original strand, 18988744 - 18988848
Alignment:
Q  208 agggcactctttaaggattcctaataaagaaattattctttaaaaaagtcaaaaactctaatttccaatgcattgatttcataaattttgacaaaaactt 307  Q
    |||||||||||| |||||||||| | || ||  ||||| | ||||||||| || |||  ||||||||||||||||| | ||||| |||| | ||||| ||    
T  18988744 agggcactctttgaggattcctacttaaaaatctattcatcaaaaaagtctaatacttaaatttccaatgcattgaatgcataagttttcataaaaattt 18988843  T
Q  308 actat 312  Q
    |||||    
T  18988844 actat 18988848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 236 - 316
Target Start/End: Complemental strand, 24041110 - 24041030
Alignment:
Q  236 gaaattattctttaaaaaagtcaaaaactctaatttccaatgcattgatttcataaattttgacaaaaacttactatttaa 316  Q
    ||||||||||||||||||| ||||| | | ||||||||||| |||| | | ||||| |||| | ||||| |||||||||||    
T  24041110 gaaattattctttaaaaaattcaaatagtttaatttccaatacattaaatacataacttttcataaaaagttactatttaa 24041030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 212 - 256
Target Start/End: Original strand, 36486906 - 36486950
Alignment:
Q  212 cactctttaaggattcctaataaagaaattattctttaaaaaagt 256  Q
    ||||||||||| |||  ||||||||||||||||||||||||||||    
T  36486906 cactctttaagcatttttaataaagaaattattctttaaaaaagt 36486950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 210 - 260
Target Start/End: Complemental strand, 4641562 - 4641513
Alignment:
Q  210 ggcactctttaaggattcctaataaagaaattattctttaaaaaagtcaaa 260  Q
    ||||||||||||||||| ||||| || |||||||| |||||||||||||||    
T  4641562 ggcactctttaaggatttctaatgaataaattatt-tttaaaaaagtcaaa 4641513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 237 - 285
Target Start/End: Original strand, 14042483 - 14042531
Alignment:
Q  237 aaattattctttaaaaaagtcaaaaactctaatttccaatgcattgatt 285  Q
    |||||||| ||||||||||||||| | | | ||||||||||||||||||    
T  14042483 aaattattatttaaaaaagtcaaatattttgatttccaatgcattgatt 14042531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 234 - 314
Target Start/End: Complemental strand, 14475089 - 14475009
Alignment:
Q  234 aagaaattattctttaaaaaagtcaaaaactctaatttccaatgcattgatttcataaattttgacaaaaacttactattt 314  Q
    ||||||||||||| |||||| |||||| | |  ||||||  |||| |||||| |||||||||| | ||||| |||||||||    
T  14475089 aagaaattattctataaaaatgtcaaatatttcaatttcagatgctttgattacataaattttcaaaaaaagttactattt 14475009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 213 - 285
Target Start/End: Original strand, 35395184 - 35395256
Alignment:
Q  213 actctttaaggattcctaataaagaaattattctttaaaaaagtcaaaaactctaatttccaatgcattgatt 285  Q
    |||||||||||||||| ||  |||||| |||| | ||||||||||||| | | |||||| | |||||||||||    
T  35395184 actctttaaggattccaaaagaagaaactattttataaaaaagtcaaatattttaattttcgatgcattgatt 35395256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 111; Significance: 8e-56; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 111; E-Value: 8e-56
Query Start/End: Original strand, 208 - 330
Target Start/End: Original strand, 24797404 - 24797526
Alignment:
Q  208 agggcactctttaaggattcctaataaagaaattattctttaaaaaagtcaaaaactctaatttccaatgcattgatttcataaattttgacaaaaactt 307  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||    
T  24797404 agggcactctttaatgattcctaataaagaaattattctttaaaaaagtcaaaaactctaatttccaatgtattgatttcataaactttgacaaaaactt 24797503  T
Q  308 actatttaaagttactaaacaat 330  Q
    |||||||||||||||||||||||    
T  24797504 actatttaaagttactaaacaat 24797526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 106; E-Value: 8e-53
Query Start/End: Original strand, 208 - 332
Target Start/End: Original strand, 29407994 - 29408119
Alignment:
Q  208 agggcactctttaaggattcctaataaagaaattattctttaaaaaagtcaaaaactctaatttccaatgcattgatttcataaattttgacaaaaactt 307  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||    
T  29407994 agggcactctttaaggattcctaataaagaaattattctttaaaaaagtcaaaaactccaatttctaatgcattgatttcataaattttgacaaaaactt 29408093  T
Q  308 actatttaaagtt-actaaacaatac 332  Q
    |||||||||||||  |||||||||||    
T  29408094 actatttaaagttccctaaacaatac 29408119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 212 - 310
Target Start/End: Complemental strand, 22020635 - 22020534
Alignment:
Q  212 cactctttaaggattcctaataaa---gaaattattctttaaaaaagtcaaaaactctaatttccaatgcattgatttcataaattttgacaaaaactta 308  Q
    |||||||||||||||  |||||||   ||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||    
T  22020635 cactctttaaggattattaataaaaaagaaattattatttaaaaaagtcaaaaactccaatttccaatgcattgatttcataaattttgataaaaactta 22020536  T
Q  309 ct 310  Q
    ||    
T  22020535 ct 22020534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 233 - 310
Target Start/End: Complemental strand, 22055108 - 22055031
Alignment:
Q  233 aaagaaattattctttaaaaaagtcaaaaactctaatttccaatgcattgatttcataaattttgacaaaaacttact 310  Q
    |||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||    
T  22055108 aaagaaattattatttaaaaaagtcaaaaactccaatttccaatgcattgatttcataaattttgataaaaacttact 22055031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 232 - 330
Target Start/End: Complemental strand, 9975143 - 9975045
Alignment:
Q  232 taaagaaattattctttaaaaaagtcaaaaactctaatttccaatgcattgatttcataaattttgacaaaaacttactatttaaagttactaaacaat 330  Q
    ||||||||||||||||||||||| | |||||||| |||||| |||  |||||||||||||| ||| ||||||| |||||||||||||||||||||||||    
T  9975143 taaagaaattattctttaaaaaaataaaaaactcaaatttctaatatattgatttcataaactttaacaaaaatttactatttaaagttactaaacaat 9975045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 211 - 330
Target Start/End: Complemental strand, 10346106 - 10345987
Alignment:
Q  211 gcactctttaaggattcctaataaagaaattattctttaaaaaagtcaaaaactctaatttccaatgcattgatttcataaattttgacaaaaacttact 310  Q
    ||||| |||||  |||||||||||  |||||||| ||||||||||| |||||||  ||||| ||||||||||||| |||||||| | ||||||| |||||    
T  10346106 gcactatttaaatattcctaataacaaaattattttttaaaaaagttaaaaacttcaattttcaatgcattgattacataaattctaacaaaaatttact 10346007  T
Q  311 atttaaagttactaaacaat 330  Q
    | ||||  ||||||||||||    
T  10346006 aattaagattactaaacaat 10345987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 209 - 252
Target Start/End: Complemental strand, 34185140 - 34185097
Alignment:
Q  209 gggcactctttaaggattcctaataaagaaattattctttaaaa 252  Q
    |||||||||||||| |||||||||||||||||||||||||||||    
T  34185140 gggcactctttaagcattcctaataaagaaattattctttaaaa 34185097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 209 - 296
Target Start/End: Original strand, 7465469 - 7465556
Alignment:
Q  209 gggcactctttaaggattcctaataaagaaattattctttaaaaaagtcaaaaactctaatttccaatgcattgatttcataaatttt 296  Q
    ||||||| ||||||||||| |||  |||||||| |||  ||||||||||||| | |  ||||||| ||||||||||| ||||||||||    
T  7465469 gggcactttttaaggattcttaaagaagaaattgttccataaaaaagtcaaatatttcaatttccgatgcattgattacataaatttt 7465556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 204 - 318
Target Start/End: Complemental strand, 5678590 - 5678476
Alignment:
Q  204 ttttagggcactctttaaggattcctaataaagaaattattctttaaaaaagtcaaaaactctaatttccaatgcattgatttcataaattttgacaaaa 303  Q
    |||||||| ||||||||||||||| || | |||||||||||| ||||||||||  || |||  ||||| |||| |||||| |  ||||||||  | ||||    
T  5678590 ttttagggtactctttaaggattcatagttaagaaattattcattaaaaaagtttaatacttcaattttcaatacattgaatatataaatttctataaaa 5678491  T
Q  304 acttactatttaaag 318  Q
    | ||||||| |||||    
T  5678490 atttactatctaaag 5678476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 209 - 316
Target Start/End: Complemental strand, 31702854 - 31702747
Alignment:
Q  209 gggcactctttaaggattcctaataaagaaattattctttaaaaaagtcaaaaactctaatttccaatgcattgatttcataaattttgacaaaaactta 308  Q
    |||||||||||||| ||| | ||  ||||||||||| | ||||||||| ||  | | ||||||| |||||||||||| || | ||||| | ||||| |||    
T  31702854 gggcactctttaagaatttcaaaagaagaaattattttataaaaaagttaagtattttaatttctaatgcattgattacacatatttttataaaaagtta 31702755  T
Q  309 ctatttaa 316  Q
    ||||||||    
T  31702754 ctatttaa 31702747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 212 - 254
Target Start/End: Original strand, 2086803 - 2086845
Alignment:
Q  212 cactctttaaggattcctaataaagaaattattctttaaaaaa 254  Q
    ||||||||||| |||||||||  ||||||||||||||||||||    
T  2086803 cactctttaagcattcctaatggagaaattattctttaaaaaa 2086845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 215 - 256
Target Start/End: Complemental strand, 32254250 - 32254209
Alignment:
Q  215 tctttaaggattcctaataaagaaattattctttaaaaaagt 256  Q
    |||||||||||||||||| |||||| ||||| ||||||||||    
T  32254250 tctttaaggattcctaattaagaaactattcattaaaaaagt 32254209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 298 - 330
Target Start/End: Original strand, 17115201 - 17115233
Alignment:
Q  298 acaaaaacttactatttaaagttactaaacaat 330  Q
    ||||||||||||||||||| |||||||||||||    
T  17115201 acaaaaacttactatttaatgttactaaacaat 17115233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 107; Significance: 2e-53; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 208 - 330
Target Start/End: Complemental strand, 5248748 - 5248626
Alignment:
Q  208 agggcactctttaaggattcctaataaagaaattattctttaaaaaagtcaaaaactctaatttccaatgcattgatttcataaattttgacaaaaactt 307  Q
    |||||||||||||||||||||||||||||||||||||||||||||| || |||||||| |||||||||||||||||||||||||| ||||||||||||||    
T  5248748 agggcactctttaaggattcctaataaagaaattattctttaaaaatgttaaaaactccaatttccaatgcattgatttcataaactttgacaaaaactt 5248649  T
Q  308 actatttaaagttactaaacaat 330  Q
    |||||||||||||||||||||||    
T  5248648 actatttaaagttactaaacaat 5248626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 208 - 330
Target Start/End: Complemental strand, 17883428 - 17883306
Alignment:
Q  208 agggcactctttaaggattcctaataaagaaattattctttaaaaaagtcaaaaactctaatttccaatgcattgatttcataaattttgacaaaaactt 307  Q
    |||||||||||||||||||  |||||||||||||||| ||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||    
T  17883428 agggcactctttaaggatttttaataaagaaattattttttaaaaaagtcaaaaactttaatttccaacgcattgatttcataaattttgacaaaaactt 17883329  T
Q  308 actatttaaagttactaaacaat 330  Q
    |||||||||||||||||||||||    
T  17883328 actatttaaagttactaaacaat 17883306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 208 - 330
Target Start/End: Complemental strand, 26402897 - 26402775
Alignment:
Q  208 agggcactctttaaggattcctaataaagaaattattctttaaaaaagtcaaaaactctaatttccaatgcattgatttcataaattttgacaaaaactt 307  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||  ||||| |||| ||||||||||||||||||||||||||||||    
T  26402897 agggcactctttaaggattcctaataaagaaattattccttaaaaaagtcaaaaacttcaattttcaatacattgatttcataaattttgacaaaaactt 26402798  T
Q  308 actatttaaagttactaaacaat 330  Q
    |||||||||||||||||||||||    
T  26402797 actatttaaagttactaaacaat 26402775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 208 - 330
Target Start/End: Complemental strand, 47405345 - 47405223
Alignment:
Q  208 agggcactctttaaggattcctaataaagaaattattctttaaaaaagtcaaaaactctaatttccaatgcattgatttcataaattttgacaaaaactt 307  Q
    |||||||||||||||||||||||||||| ||||||||| ||||||| ||||||||||  |||||| ||||||||||||||||||| ||||||||||||||    
T  47405345 agggcactctttaaggattcctaataaataaattattcattaaaaaggtcaaaaacttcaatttctaatgcattgatttcataaactttgacaaaaactt 47405246  T
Q  308 actatttaaagttactaaacaat 330  Q
    |||||||||||||||||||||||    
T  47405245 actatttaaagttactaaacaat 47405223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 207 - 330
Target Start/End: Complemental strand, 26804133 - 26804012
Alignment:
Q  207 tagggcactctttaaggattcctaataaagaaattattctttaaaaaagtcaaaaactctaatttccaatgcattgatttcataaattttgacaaaaact 306  Q
    ||||||||||||||| ||||| ||| |||  |||||||||||||||||||||||||||  |||||||||||||||||||| ||||| |||||||||||||    
T  26804133 tagggcactctttaaagattcttaaaaaa--aattattctttaaaaaagtcaaaaacttcaatttccaatgcattgattttataaactttgacaaaaact 26804036  T
Q  307 tactatttaaagttactaaacaat 330  Q
    ||||||||||||||| ||||||||    
T  26804035 tactatttaaagttattaaacaat 26804012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 208 - 319
Target Start/End: Complemental strand, 33899851 - 33899740
Alignment:
Q  208 agggcactctttaaggattcctaataaagaaattattctttaaaaaagtcaaaaactctaatttccaatgcattgatttcataaattttgacaaaaactt 307  Q
    |||||||||||||| ||||||||||||||||||||||| |||||||| ||| ||| |  ||||| ||||| |||||||||||||||||| ||||||||||    
T  33899851 agggcactctttaaagattcctaataaagaaattattccttaaaaaaatcacaaatttcaattttcaatgtattgatttcataaattttaacaaaaactt 33899752  T
Q  308 actatttaaagt 319  Q
    | ||||||||||    
T  33899751 aatatttaaagt 33899740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 212 - 310
Target Start/End: Complemental strand, 6388064 - 6387966
Alignment:
Q  212 cactctttaaggattcctaataaagaaattattctttaaaaaagtcaaaaactctaatttccaatgcattgatttcataaattttgacaaaaacttact 310  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||  |||||||||| |||| |||| ||||||||| ||||| |||||||    
T  6388064 cactctttaaggattcataataaagaaattattctttaaaaaagtcaaaaacttcaatttccaatacattaattttataaattttaacaaatacttact 6387966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 266 - 330
Target Start/End: Complemental strand, 41514348 - 41514284
Alignment:
Q  266 taatttccaatgcattgatttcataaattttgacaaaaacttactatttaaagttactaaacaat 330  Q
    |||||| |||| ||||||||||||||| |||||| ||||||||||||||||||||||||||||||    
T  41514348 taattttcaatacattgatttcataaactttgactaaaacttactatttaaagttactaaacaat 41514284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 246 - 291
Target Start/End: Complemental strand, 39960458 - 39960413
Alignment:
Q  246 tttaaaaaagtcaaaaactctaatttccaatgcattgatttcataa 291  Q
    ||||||||||| |||||||| |||||||||||||||||||||||||    
T  39960458 tttaaaaaagttaaaaactccaatttccaatgcattgatttcataa 39960413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 217 - 260
Target Start/End: Original strand, 45869032 - 45869075
Alignment:
Q  217 tttaaggattcctaataaagaaattattctttaaaaaagtcaaa 260  Q
    ||||||||||| |||| ||| |||||||||||||||||||||||    
T  45869032 tttaaggattcttaatcaagtaattattctttaaaaaagtcaaa 45869075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 212 - 254
Target Start/End: Original strand, 17302886 - 17302928
Alignment:
Q  212 cactctttaaggattcctaataaagaaattattctttaaaaaa 254  Q
    ||||||||||| ||||||||||||||||||||| ||| |||||    
T  17302886 cactctttaagcattcctaataaagaaattattattttaaaaa 17302928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 212 - 285
Target Start/End: Original strand, 8170026 - 8170099
Alignment:
Q  212 cactctttaaggattcctaataaagaaattattctttaaaaaagtcaaaaactctaatttccaatgcattgatt 285  Q
    ||||||||||||||||| ||  ||||||||||| | ||||||||||||| | | | |||||| || ||||||||    
T  8170026 cactctttaaggattccaaaagaagaaattattttataaaaaagtcaaatattttgatttccgatacattgatt 8170099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 212 - 285
Target Start/End: Complemental strand, 33887963 - 33887890
Alignment:
Q  212 cactctttaaggattcctaataaagaaattattctttaaaaaagtcaaaaactctaatttccaatgcattgatt 285  Q
    ||||||||||| ||||| ||  ||  ||||||||||||||||||||||| | |  ||||| |||||||||||||    
T  33887963 cactctttaagcattccaaaataaataattattctttaaaaaagtcaaatatttcaattttcaatgcattgatt 33887890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 217 - 253
Target Start/End: Original strand, 46916100 - 46916136
Alignment:
Q  217 tttaaggattcctaataaagaaattattctttaaaaa 253  Q
    |||||| ||||||||||||||||||||||| ||||||    
T  46916100 tttaagcattcctaataaagaaattattctataaaaa 46916136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 103; Significance: 5e-51; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 208 - 330
Target Start/End: Original strand, 18375053 - 18375175
Alignment:
Q  208 agggcactctttaaggattcctaataaagaaattattctttaaaaaagtcaaaaactctaatttccaatgcattgatttcataaattttgacaaaaactt 307  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||||||||||||    
T  18375053 agggtactctttaaggattcctaataaagaaattattctttaaaaaagtcaaaaactccaattttcaatgcattgatttcataaactttgacaaaaactt 18375152  T
Q  308 actatttaaagttactaaacaat 330  Q
    |||||||||||| ||||||||||    
T  18375153 actatttaaagtcactaaacaat 18375175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 212 - 330
Target Start/End: Complemental strand, 27501846 - 27501728
Alignment:
Q  212 cactctttaaggattcctaataaagaaattattctttaaaaaagtcaaaaactctaatttccaatgcattgatttcataaattttgacaaaaacttacta 311  Q
    ||||||||||| |||  |||||||||||||||| ||| |||||||||||||||  ||||||||||||||| |||||||||| ||||||||||||||||||    
T  27501846 cactctttaagaatttttaataaagaaattatttttttaaaaagtcaaaaacttcaatttccaatgcattaatttcataaactttgacaaaaacttacta 27501747  T
Q  312 tttaaagttactaaacaat 330  Q
    |||||||||||||||||||    
T  27501746 tttaaagttactaaacaat 27501728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 212 - 310
Target Start/End: Complemental strand, 44330743 - 44330642
Alignment:
Q  212 cactctttaaggattcctaataaa---gaaattattctttaaaaaagtcaaaaactctaatttccaatgcattgatttcataaattttgacaaaaactta 308  Q
    |||||||||||||||  |||||||   ||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||    
T  44330743 cactctttaaggattattaataaaaaagaaattattatttaaaaaagtcaaaaactccaatttccaatgcattgatttcataaattttgataaaaactta 44330644  T
Q  309 ct 310  Q
    ||    
T  44330643 ct 44330642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 233 - 310
Target Start/End: Complemental strand, 44365493 - 44365416
Alignment:
Q  233 aaagaaattattctttaaaaaagtcaaaaactctaatttccaatgcattgatttcataaattttgacaaaaacttact 310  Q
    |||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||    
T  44365493 aaagaaattattatttaaaaaagtcaaaaactccaatttccaatgcattgatttcataaattttgataaaaacttact 44365416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 229 - 330
Target Start/End: Original strand, 63897 - 63995
Alignment:
Q  229 taataaagaaattattctttaaaaaagtcaaaaactctaatttccaatgcattgatttcataaattttgacaaaaacttactatttaaagttactaaaca 328  Q
    |||||||||||||||||||||||||||||||||| | ||||||  ||| |||| |||||||||||||||||||||||||||||   ||||||||||||||    
T  63897 taataaagaaattattctttaaaaaagtcaaaaattttaatttttaatacattaatttcataaattttgacaaaaacttacta---aaagttactaaaca 63993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 212 - 292
Target Start/End: Complemental strand, 32493183 - 32493104
Alignment:
Q  212 cactctttaaggattcctaataaagaaattattctttaaaaaagtcaaaaactctaatttccaatgcattgatttcataaa 292  Q
    |||||||||||||||| ||||||| ||||||||||| ||||||||||||||||| |||||||| |||||||||||||||||    
T  32493183 cactctttaaggattcttaataaa-aaattattcttcaaaaaagtcaaaaactccaatttccattgcattgatttcataaa 32493104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 216 - 315
Target Start/End: Complemental strand, 9153581 - 9153483
Alignment:
Q  216 ctttaaggattcctaataaagaaattattctttaaaaaagtcaaaaactctaatttccaatgcattgatttcataaattttgacaaaaacttactattta 315  Q
    ||||||||||||| ||| |||||||||||||||||||||| |||| |||  ||||||||||||||||| | || ||||||| |  |||||||||||||||    
T  9153581 ctttaaggattccaaattaagaaattattctttaaaaaaggcaaacacttcaatttccaatgcattgaatacacaaattttta-taaaacttactattta 9153483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 210 - 296
Target Start/End: Complemental strand, 6761839 - 6761753
Alignment:
Q  210 ggcactctttaaggattcctaataaagaaattattctttaaaaaagtcaaaaactctaatttccaatgcattgatttcataaatttt 296  Q
    ||||||||||||| ||||| ||  || |||| ||||| ||||||||||||| | |  ||||||||||||||||||| ||||||||||    
T  6761839 ggcactctttaagcattccaaaagaataaatcattctataaaaaagtcaaatatttcaatttccaatgcattgattacataaatttt 6761753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 208 - 316
Target Start/End: Original strand, 13538387 - 13538495
Alignment:
Q  208 agggcactctttaaggattcctaataaagaaattattctttaaaaaagtcaaaaactctaatttccaatgcattgatttcataaattttgacaaaaactt 307  Q
    ||||||||||||||| || |  ||| |  |||||||||||||||||| ||||| | |  ||||||||||||||||| | ||||| |||| | ||||| ||    
T  13538387 agggcactctttaagcatactaaattagaaaattattctttaaaaaattcaaataattcaatttccaatgcattgaatacataacttttcataaaaagtt 13538486  T
Q  308 actatttaa 316  Q
    |||||||||    
T  13538487 actatttaa 13538495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 212 - 260
Target Start/End: Complemental strand, 44769181 - 44769133
Alignment:
Q  212 cactctttaaggattcctaataaagaaattattctttaaaaaagtcaaa 260  Q
    |||||||||||||||| ||||||| ||||||| ||||||||||||||||    
T  44769181 cactctttaaggattcttaataaaaaaattatgctttaaaaaagtcaaa 44769133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 206 - 307
Target Start/End: Complemental strand, 15120164 - 15120062
Alignment:
Q  206 ttagggcactctttaaggattcctaataaagaaattattc-tttaaaaaagtcaaaaactctaatttccaatgcattgatttcataaattttgacaaaaa 304  Q
    ||||||||||||||||||||||||||| |||||| | ||  ||||||||| ||||  | |  ||||||||||||||| | ||||| |||||| | |||||    
T  15120164 ttagggcactctttaaggattcctaattaagaaaatgtttatttaaaaaaatcaattagttcaatttccaatgcattaaattcatcaatttttataaaaa 15120065  T
Q  305 ctt 307  Q
    |||    
T  15120064 ctt 15120062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 206 - 244
Target Start/End: Original strand, 43745613 - 43745651
Alignment:
Q  206 ttagggcactctttaaggattcctaataaagaaattatt 244  Q
    ||||||||||||||||||||||| |||||||||||||||    
T  43745613 ttagggcactctttaaggattccaaataaagaaattatt 43745651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 211 - 296
Target Start/End: Original strand, 8964386 - 8964471
Alignment:
Q  211 gcactctttaaggattcctaataaagaaattattctttaaaaaagtcaaaaactctaatttccaatgcattgatttcataaatttt 296  Q
    ||||| |||||| ||||  ||| ||| ||||||||||||||||||| ||| | |  ||||||||||||||||||| || |||||||    
T  8964386 gcactgtttaagcattctaaattaagtaattattctttaaaaaagtaaaatatttcaatttccaatgcattgattacacaaatttt 8964471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 267 - 318
Target Start/End: Complemental strand, 5962019 - 5961968
Alignment:
Q  267 aatttccaatgcattgatttcataaattttgacaaaaacttactatttaaag 318  Q
    ||||||||||||||||||| |||||||||| | ||| | |||||||||||||    
T  5962019 aatttccaatgcattgattacataaattttcaaaaacagttactatttaaag 5961968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 237 - 316
Target Start/End: Complemental strand, 21738319 - 21738240
Alignment:
Q  237 aaattattctttaaaaaagtcaaaaactctaatttccaatgcattgatttcataaattttgacaaaaacttactatttaa 316  Q
    |||||||| |||||||| |||||| ||| |||||| ||||||| |||||  ||||| ||| | |||||||||||| ||||    
T  21738319 aaattattttttaaaaaggtcaaatactataatttgcaatgcactgattatataaaattttataaaaacttactacttaa 21738240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 235 - 313
Target Start/End: Original strand, 24792007 - 24792086
Alignment:
Q  235 agaaattattctttaaaaaagtcaaaaactctaatttccaatgcattgatttcata-aattttgacaaaaacttactatt 313  Q
    ||||| ||||||||||||||||||||   |  || |||||||||||||||| |||| |||||| | ||||||||||||||    
T  24792007 agaaaatattctttaaaaaagtcaaatgttacaaattccaatgcattgattacatataatttttataaaaacttactatt 24792086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 212 - 319
Target Start/End: Complemental strand, 33963054 - 33962947
Alignment:
Q  212 cactctttaaggattcctaataaagaaattattctttaaaaaagtcaaaaactctaatttccaatgcattgatttcataaattttgacaaaaacttacta 311  Q
    |||||||||| | || | ||| |||||||||||||||||||||||  || |||  ||||| ||||||||||| | || || |||| | ||||| ||| ||    
T  33963054 cactctttaaagttttccaattaagaaattattctttaaaaaagtttaacacttcaattttcaatgcattgaatgcacaatttttcataaaaatttatta 33962955  T
Q  312 tttaaagt 319  Q
    ||||||||    
T  33962954 tttaaagt 33962947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 238 - 284
Target Start/End: Original strand, 13811060 - 13811106
Alignment:
Q  238 aattattctttaaaaaagtcaaaaactctaatttccaatgcattgat 284  Q
    ||||||||||||||||||| ||| | | |||||||||||||||||||    
T  13811060 aattattctttaaaaaagtaaaatattttaatttccaatgcattgat 13811106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 212 - 285
Target Start/End: Complemental strand, 18053128 - 18053055
Alignment:
Q  212 cactctttaaggattcctaataaagaaattattctttaaaaaagtcaaaaactctaatttccaatgcattgatt 285  Q
    ||||||||||||||| | ||  ||||||||||| | ||||||||||||| | | | |||||| |||||||||||    
T  18053128 cactctttaaggatttcaaaagaagaaattattttataaaaaagtcaaatattttgatttccgatgcattgatt 18053055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 212 - 261
Target Start/End: Complemental strand, 37082311 - 37082262
Alignment:
Q  212 cactctttaaggattcctaataaagaaattattctttaaaaaagtcaaaa 261  Q
    |||| |||||| |||||| || ||||||||||||||||||||||| ||||    
T  37082311 cactttttaagcattccttatgaagaaattattctttaaaaaagtaaaaa 37082262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 207 - 259
Target Start/End: Original strand, 20064901 - 20064953
Alignment:
Q  207 tagggcactctttaaggattcctaataaagaaattattctttaaaaaagtcaa 259  Q
    ||||||||||||||||||| |  |||| || ||||||||||| ||||||||||    
T  20064901 tagggcactctttaaggatcctaaatatagtaattattcttttaaaaagtcaa 20064953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 211 - 311
Target Start/End: Original strand, 24765329 - 24765429
Alignment:
Q  211 gcactctttaaggattcctaataaagaaattattctttaaaaaagtcaaaaactctaatttccaatgcattgatttcataaattttgacaaaaacttact 310  Q
    ||||||||||||||| || |||  ||||| ||||| |||||||| ||||| | |  || |||||||||||||||| || | ||||| | || ||||||||    
T  24765329 gcactctttaaggatcccaaatttagaaaatattccttaaaaaaatcaaatattacaaattccaatgcattgattacacatatttttataataacttact 24765428  T
Q  311 a 311  Q
    |    
T  24765429 a 24765429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 100; Significance: 3e-49; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 211 - 326
Target Start/End: Complemental strand, 34336585 - 34336470
Alignment:
Q  211 gcactctttaaggattcctaataaagaaattattctttaaaaaagtcaaaaactctaatttccaatgcattgatttcataaattttgacaaaaacttact 310  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||| |||||||||||||||||    
T  34336585 gcactctttaaggattcttaataaagaaattattctttaaaaaagtcaaaaacttcaatttccaatgcattgatttcataaactttgacaaaaacttact 34336486  T
Q  311 atttaaagttactaaa 326  Q
    ||||||||||||||||    
T  34336485 atttaaagttactaaa 34336470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 212 - 330
Target Start/End: Original strand, 33650003 - 33650121
Alignment:
Q  212 cactctttaaggattcctaataaagaaattattctttaaaaaagtcaaaaactctaatttccaatgcattgatttcataaattttgacaaaaacttacta 311  Q
    ||||||||||| ||| |||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  33650003 cactctttaagaatttctaataaagaaattattcttaaaaaaagtctaaaactctaatttccaatgcattgatttcatacattttgacaaaaacttacta 33650102  T
Q  312 tttaaagttactaaacaat 330  Q
    |||||||||||||||||||    
T  33650103 tttaaagttactaaacaat 33650121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 208 - 326
Target Start/End: Complemental strand, 44254242 - 44254124
Alignment:
Q  208 agggcactctttaaggattcctaataaagaaattattctttaaaaaagtcaaaaactctaatttccaatgcattgatttcataaattttgacaaaaactt 307  Q
    ||||||||||||||||||| |||||||||||||| ||| ||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||    
T  44254242 agggcactctttaaggatttctaataaagaaattcttccttaaaaaagtcaaaaacttcaatttccaatgcattgatttcataaattttgacaaaaactt 44254143  T
Q  308 actatttaaagttactaaa 326  Q
    |||||||||||||||||||    
T  44254142 actatttaaagttactaaa 44254124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 93; E-Value: 4e-45
Query Start/End: Original strand, 217 - 321
Target Start/End: Original strand, 15271018 - 15271122
Alignment:
Q  217 tttaaggattcctaataaagaaattattctttaaaaaagtcaaaaactctaatttccaatgcattgatttcataaattttgacaaaaacttactatttaa 316  Q
    |||||||||  |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15271018 tttaaggatctctaataaagaaattattctttaaaaaagtcaaaaactcgaatttccaatgcattgatttcataaattttgacaaaaacttactatttaa 15271117  T
Q  317 agtta 321  Q
    |||||    
T  15271118 agtta 15271122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 229 - 330
Target Start/End: Original strand, 42704317 - 42704418
Alignment:
Q  229 taataaagaaattattctttaaaaaagtcaaaaactctaatttccaatgcattgatttcataaattttgacaaaaacttactatttaaagttactaaaca 328  Q
    |||||||||||||| || ||||||||||||||||||| ||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||    
T  42704317 taataaagaaattactcattaaaaaagtcaaaaactccaatctccaatgcattaatttcataaattttgacaaaaacttactatttaaagttagtaaaca 42704416  T
Q  329 at 330  Q
    ||    
T  42704417 at 42704418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 208 - 330
Target Start/End: Complemental strand, 38236364 - 38236250
Alignment:
Q  208 agggcactctttaaggattcctaataaagaaattattctttaaaaaagtcaaaaactctaatttccaatgcattgatttcataaattttgacaaaaactt 307  Q
    ||||||||||||| |||||| |||||||||||||||| ||||||||||||||||        || |||||||||||||||||||||||||||||||  ||    
T  38236364 agggcactctttacggattcttaataaagaaattattttttaaaaaagtcaaaa--------tttcaatgcattgatttcataaattttgacaaaatttt 38236273  T
Q  308 actatttaaagttactaaacaat 330  Q
    |||||||||||||| ||||||||    
T  38236272 actatttaaagttattaaacaat 38236250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 212 - 321
Target Start/End: Original strand, 9774741 - 9774851
Alignment:
Q  212 cactctttaaggattcctaataaagaaattattctttaa-aaaagtcaaaaactctaatttccaatgcattgatttcataaattttgacaaaaacttact 310  Q
    |||| |||||||||||   ||||| |||||||||||| | |||| ||||||||| |||||| |||||||||||||||||||  ||||||||||| |||||    
T  9774741 cactttttaaggattctatataaaaaaattattcttttataaaaatcaaaaactataattttcaatgcattgatttcataagctttgacaaaaatttact 9774840  T
Q  311 atttaaagtta 321  Q
    |||||||||||    
T  9774841 atttaaagtta 9774851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 177 - 317
Target Start/End: Original strand, 44042505 - 44042637
Alignment:
Q  177 gggttttgttaacgagtgccctaagggttttagggcactctttaaggattcctaataaagaaattattctttaaaaaagtcaaaaactctaatttccaat 276  Q
    ||||||||||||||||||||||||||         |||||||||||||||| |||| |||||| ||||| || |||||||  || |||  ||||||||||    
T  44042505 gggttttgttaacgagtgccctaagga--------cactctttaaggattcataattaagaaactattcattgaaaaagttcaatacttcaatttccaat 44042596  T
Q  277 gcattgatttcataaattttgacaaaaacttactatttaaa 317  Q
    ||||||| | || ||||||  | ||||||||||||||||||    
T  44042597 gcattgaatgcacaaatttctataaaaacttactatttaaa 44042637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 212 - 316
Target Start/End: Complemental strand, 39691225 - 39691121
Alignment:
Q  212 cactctttaaggattcctaataaagaaattattctttaaaaaagtcaaaaactctaatttccaatgcattgatttcataaattttgacaaaaacttacta 311  Q
    ||||||||||| |||||  || || |||||||||||||||||||||||| | |  ||||| ||||||||||| | || ||||||| | ||||| ||||||    
T  39691225 cactctttaagcattccacattaaaaaattattctttaaaaaagtcaaatagttcaattttcaatgcattgaatacacaaattttcataaaaaattacta 39691126  T
Q  312 tttaa 316  Q
    |||||    
T  39691125 tttaa 39691121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 212 - 284
Target Start/End: Original strand, 43429684 - 43429756
Alignment:
Q  212 cactctttaaggattcctaataaagaaattattctttaaaaaagtcaaaaactctaatttccaatgcattgat 284  Q
    |||||||||| ||||| |||| |||||||||||  ||||||||||||||||||  ||||| |||| |||||||    
T  43429684 cactctttaaagattcttaatgaagaaattatttcttaaaaaagtcaaaaacttcaattttcaatccattgat 43429756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 209 - 316
Target Start/End: Complemental strand, 41106112 - 41106005
Alignment:
Q  209 gggcactctttaaggattcctaataaagaaattattctttaaaaaagtcaaaaactctaatttccaatgcattgatttcataaattttgacaaaaactta 308  Q
    ||||||| ||| |||||||| ||| ||||||||| || |||||||||||||| | |  ||||| ||||||||||| |||| || ||||   |||||||||    
T  41106112 gggcactgtttgaggattccaaattaagaaattaatcattaaaaaagtcaaatagttcaattttcaatgcattgaattcacaatttttcgtaaaaactta 41106013  T
Q  309 ctatttaa 316  Q
    | ||||||    
T  41106012 ccatttaa 41106005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 209 - 279
Target Start/End: Complemental strand, 28460106 - 28460036
Alignment:
Q  209 gggcactctttaaggattcctaataaagaaattattctttaaaaaagtcaaaaactctaatttccaatgca 279  Q
    |||||||||||||| |||||||||||| |||||||| ||||||| | | ||| |||  |||||||||||||    
T  28460106 gggcactctttaagcattcctaataaaaaaattattttttaaaataattaaagacttcaatttccaatgca 28460036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 208 - 256
Target Start/End: Original strand, 4166486 - 4166534
Alignment:
Q  208 agggcactctttaaggattcctaataaagaaattattctttaaaaaagt 256  Q
    |||||||||||||||||||| |||| |||||||||||| || |||||||    
T  4166486 agggcactctttaaggattcataatcaagaaattattcattgaaaaagt 4166534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 211 - 318
Target Start/End: Complemental strand, 10335135 - 10335027
Alignment:
Q  211 gcactctttaaggattcctaataaagaaattattctttaaaaaa-gtcaaaaactctaatttccaatgcattgatttcataaattttgacaaaaacttac 309  Q
    |||||||||||| ||||| ||  || |||||||||| ||||||| |||||| | | |||||| ||||||||| |||  | ||||||| ||||||| ||||    
T  10335135 gcactctttaagaattccaaaagaataaattattctataaaaaaagtcaaatattataattttcaatgcattaattatacaaattttcacaaaaaattac 10335036  T
Q  310 tatttaaag 318  Q
     ||||||||    
T  10335035 aatttaaag 10335027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 208 - 279
Target Start/End: Complemental strand, 8785398 - 8785327
Alignment:
Q  208 agggcactctttaaggattcctaataaagaaattattctttaaaaaagtcaaaaactctaatttccaatgca 279  Q
    |||| |||||||||| ||||||||| || ||||||||||||||||||   ||||| |  |||||||||||||    
T  8785398 agggtactctttaagcattcctaatgaataaattattctttaaaaaaagtaaaaatttcaatttccaatgca 8785327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 209 - 316
Target Start/End: Original strand, 12002259 - 12002366
Alignment:
Q  209 gggcactctttaaggattcctaataaagaaattattctttaaaaaagtcaaaaactctaatttccaatgcattgatttcataaattttgacaaaaactta 308  Q
    |||||||||||||| || |  ||| ||| |||||||||||||||| || |||   |  ||||||||||||| ||||| || ||||||| | ||||| |||    
T  12002259 gggcactctttaagtatactaaattaagtaattattctttaaaaatgtaaaagttttcaatttccaatgcactgattacacaaatttttataaaaagtta 12002358  T
Q  309 ctatttaa 316  Q
    ||||||||    
T  12002359 ctatttaa 12002366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 209 - 256
Target Start/End: Complemental strand, 45368837 - 45368790
Alignment:
Q  209 gggcactctttaaggattcctaataaagaaattattctttaaaaaagt 256  Q
    |||||||||||||||||||| || |||||||||||| | |||||||||    
T  45368837 gggcactctttaaggattccaaaaaaagaaattattttataaaaaagt 45368790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 209 - 319
Target Start/End: Complemental strand, 1876596 - 1876486
Alignment:
Q  209 gggcactctttaaggattcctaataaagaaattattctttaaaaaagtcaaaaactctaatttccaatgcattgatttcataaattttgacaaaaactta 308  Q
    |||||||||||||| || |  ||| ||| ||||||||||| |||| |||||||  |  ||||||||||||| ||||| || ||| ||| | ||||| |||    
T  1876596 gggcactctttaagcatgctaaattaagtaattattcttttaaaatgtcaaaattttcaatttccaatgcactgattacacaaactttcataaaaaatta 1876497  T
Q  309 ctatttaaagt 319  Q
    | |||||||||    
T  1876496 ccatttaaagt 1876486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 212 - 254
Target Start/End: Complemental strand, 36782874 - 36782832
Alignment:
Q  212 cactctttaaggattcctaataaagaaattattctttaaaaaa 254  Q
    ||||||||||  |||||||||||| ||||||||||||||||||    
T  36782874 cactctttaaacattcctaataaataaattattctttaaaaaa 36782832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 209 - 317
Target Start/End: Complemental strand, 37813517 - 37813410
Alignment:
Q  209 gggcactctttaaggattcctaataaagaaattattc-tttaaaaaagtcaaaaactctaatttccaatgcattgatttcataaattttgacaaaaactt 307  Q
    ||||||||||||||||| || |||  || |||||||| ||||||||||||||  | |  ||||||||||||||||| | || || ||||  || ||||||    
T  37813517 gggcactctttaaggatcccaaatttagtaattattcttttaaaaaagtcaaccattacaatttccaatgcattgaatacacaactttt--cataaactt 37813420  T
Q  308 actatttaaa 317  Q
    ||||||||||    
T  37813419 actatttaaa 37813410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 217 - 281
Target Start/End: Original strand, 25382622 - 25382687
Alignment:
Q  217 tttaaggattcctaataaagaaattattcttt-aaaaaagtcaaaaactctaatttccaatgcatt 281  Q
    |||||| ||||| ||| ||||||||||||||| |||||||| ||| | || |||||||||||||||    
T  25382622 tttaagcattccaaattaagaaattattctttaaaaaaagtaaaatagtccaatttccaatgcatt 25382687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 211 - 276
Target Start/End: Original strand, 38167439 - 38167504
Alignment:
Q  211 gcactctttaaggattcctaataaagaaattattctttaaaaaagtcaaaaactctaatttccaat 276  Q
    |||||||||||| ||| || || |||||||||||||||||||||   |||||||  ||||||||||    
T  38167439 gcactctttaagcattacttatgaagaaattattctttaaaaaaaataaaaacttcaatttccaat 38167504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 212 - 316
Target Start/End: Original strand, 6073225 - 6073329
Alignment:
Q  212 cactctttaaggattcctaataaagaaattattctttaaaaaagtcaaaaactctaatttccaatgcattgatttcataaattttgacaaaaacttacta 311  Q
    ||||||||||| ||||||||| || ||| |||||||| | ||| ||||| | |  |||||  |||||| ||| ||||||||| || | |||||||||| |    
T  6073225 cactctttaagcattcctaattaaaaaaatattcttttacaaaatcaaataattcaatttttaatgcactgaattcataaatcttcataaaaacttacca 6073324  T
Q  312 tttaa 316  Q
    |||||    
T  6073325 tttaa 6073329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 100; Significance: 3e-49; HSPs: 24)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 178 - 326
Target Start/End: Original strand, 32734650 - 32734790
Alignment:
Q  178 ggttttgttaacgagtgccctaagggttttagggcactctttaaggattcctaataaagaaattattctttaaaaaagtcaaaaactctaatttccaatg 277  Q
    ||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||    
T  32734650 ggttttgttaacgagtgccctaaggg--------cactctttaaggattcctaataaagaaattattctttaaaaaaggtaaaaactctaatttccaatg 32734741  T
Q  278 cattgatttcataaattttgacaaaaacttactatttaaagttactaaa 326  Q
    ||||  |||||||||||||||||||||||||||| ||||||||||||||    
T  32734742 cattagtttcataaattttgacaaaaacttactacttaaagttactaaa 32734790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 211 - 308
Target Start/End: Original strand, 52299036 - 52299133
Alignment:
Q  211 gcactctttaaggattcctaataaagaaattattctttaaaaaagtcaaaaactctaatttccaatgcattgatttcataaattttgacaaaaactta 308  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||    
T  52299036 gcactctttaaggattcctaataaagaaattattccttaaaaaagtcaaaaactccaatttccaatgcattgatttcataaactttgacaaaaactta 52299133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 212 - 331
Target Start/End: Complemental strand, 53641785 - 53641666
Alignment:
Q  212 cactctttaaggattcctaataaagaaattattctttaaaaaagtcaaaaactctaatttccaatgcattgatttcataaattttgacaaaaacttacta 311  Q
    |||||||||| |||| ||||||||||||||||||||||||||| |||||||||  |||||| ||||||||||||||||||| ||||||||||||||||||    
T  53641785 cactctttaaagatttctaataaagaaattattctttaaaaaattcaaaaacttaaatttctaatgcattgatttcataaactttgacaaaaacttacta 53641686  T
Q  312 tttaaagttactaaacaata 331  Q
    || ||||||| |||||||||    
T  53641685 ttcaaagttattaaacaata 53641666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 208 - 332
Target Start/End: Original strand, 53605645 - 53605769
Alignment:
Q  208 agggcactctttaaggattcctaataaagaaattattctttaaaaaagtcaaaaactctaatttccaatgcattgatttcataaattttgacaaaaactt 307  Q
    |||||||| |||||| ||||||||||| ||||||||| |||  ||| | |||||||||||||||||||||||||||||| ||||| ||||| ||||||||    
T  53605645 agggcactttttaagaattcctaataatgaaattattttttctaaatgccaaaaactctaatttccaatgcattgattttataaactttgataaaaactt 53605744  T
Q  308 actatttaaagttactaaacaatac 332  Q
    |||||||||||||||||||||||||    
T  53605745 actatttaaagttactaaacaatac 53605769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 208 - 330
Target Start/End: Complemental strand, 4275322 - 4275200
Alignment:
Q  208 agggcactctttaaggattcctaataaagaaattattctttaaaaaagtcaaaaactctaatttccaatgcattgatttcataaattttgacaaaaactt 307  Q
    |||||||||||||| ||||| ||||||| |||||||||||||||||||| |||||||| || ||||||| ||||||||| ||||| ||||||||||||||    
T  4275322 agggcactctttaaagattcttaataaaaaaattattctttaaaaaagttaaaaactccaacttccaatacattgattttataaactttgacaaaaactt 4275223  T
Q  308 actatttaaagttactaaacaat 330  Q
    | |||||||||||| ||||||||    
T  4275222 attatttaaagttattaaacaat 4275200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 212 - 326
Target Start/End: Complemental strand, 11465736 - 11465622
Alignment:
Q  212 cactctttaaggattcctaataaagaaattattctttaaaaaagtcaaaaactctaatttccaatgcattgatttcataaattttgacaaaaacttacta 311  Q
    |||||||||||||||  ||||||| ||||||||||||||||||||||||||||  ||||| |||| || |||||||||||| ||||||||||||||||||    
T  11465736 cactctttaaggatttttaataaaaaaattattctttaaaaaagtcaaaaacttcaattttcaatacagtgatttcataaactttgacaaaaacttacta 11465637  T
Q  312 tttaaagttactaaa 326  Q
    ||||||||| |||||    
T  11465636 tttaaagtttctaaa 11465622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 208 - 292
Target Start/End: Complemental strand, 52380940 - 52380856
Alignment:
Q  208 agggcactctttaaggattcctaataaagaaattattctttaaaaaagtcaaaaactctaatttccaatgcattgatttcataaa 292  Q
    |||||||||||||| |||||||||||||||||||||| || |||||| ||||||||||||||||||||||||||||| |||||||    
T  52380940 agggcactctttaacgattcctaataaagaaattatttttaaaaaaaatcaaaaactctaatttccaatgcattgatctcataaa 52380856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 209 - 279
Target Start/End: Original strand, 17517545 - 17517616
Alignment:
Q  209 gggcactctttaaggattcctaataaagaaattattcttt-aaaaaagtcaaaaactctaatttccaatgca 279  Q
    |||||||||||||  ||||||||||||||||| ||||||| |||||||  ||||||| ||||||||||||||    
T  17517545 gggcactctttaaacattcctaataaagaaataattctttaaaaaaaggtaaaaactttaatttccaatgca 17517616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 212 - 326
Target Start/End: Complemental strand, 30364162 - 30364049
Alignment:
Q  212 cactctttaaggattcctaataaa-gaaattattctttaaaaaagtcaaaaactctaatttccaatgcattgatttcataaattttgacaaaaacttact 310  Q
    |||||||||||||||| |||| || |||| |||| ||||||||| ||||||| |  ||||| || | ||||||||||||||| ||| |||||||||| ||    
T  30364162 cactctttaaggattcttaatgaatgaaaatatt-tttaaaaaaatcaaaaatttcaattttca-tccattgatttcataaactttaacaaaaacttgct 30364065  T
Q  311 atttaaagttactaaa 326  Q
    |||||||||| |||||    
T  30364064 atttaaagttgctaaa 30364049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 212 - 283
Target Start/End: Original strand, 53040464 - 53040535
Alignment:
Q  212 cactctttaaggattcctaataaagaaattattctttaaaaaagtcaaaaactctaatttccaatgcattga 283  Q
    ||||||||||||||||  ||| ||||||||||| ||||||||| ||||| |||  ||||||||||| |||||    
T  53040464 cactctttaaggattctaaattaagaaattattatttaaaaaattcaaatacttcaatttccaatgtattga 53040535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 215 - 261
Target Start/End: Complemental strand, 47915062 - 47915016
Alignment:
Q  215 tctttaaggattcctaataaagaaattattctttaaaaaagtcaaaa 261  Q
    |||||||| |||| |||||||||||||||||||||||||||| ||||    
T  47915062 tctttaagcattcataataaagaaattattctttaaaaaagtaaaaa 47915016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 234 - 296
Target Start/End: Complemental strand, 53433275 - 53433213
Alignment:
Q  234 aagaaattattctttaaaaaagtcaaaaactctaatttccaatgcattgatttcataaatttt 296  Q
    ||||||||||||| ||||||||||||| | | |||||| | ||||||||||| ||||||||||    
T  53433275 aagaaattattctataaaaaagtcaaatattttaattttcgatgcattgattacataaatttt 53433213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 212 - 253
Target Start/End: Complemental strand, 23554784 - 23554743
Alignment:
Q  212 cactctttaaggattcctaataaagaaattattctttaaaaa 253  Q
    |||||||||||||||| |||||||||||||||| ||||||||    
T  23554784 cactctttaaggattcttaataaagaaattattttttaaaaa 23554743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 212 - 260
Target Start/End: Original strand, 2831542 - 2831590
Alignment:
Q  212 cactctttaaggattcctaataaagaaattattctttaaaaaagtcaaa 260  Q
    ||||||||||||||||| ||| ||||||||||| ||||| |||||||||    
T  2831542 cactctttaaggattccaaatcaagaaattattttttaataaagtcaaa 2831590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 215 - 283
Target Start/End: Complemental strand, 13804956 - 13804888
Alignment:
Q  215 tctttaaggattcctaataaagaaattattctttaaaaaagtcaaaaactctaatttccaatgcattga 283  Q
    |||||||||||||| ||| ||||||| |||| || ||||||||||| |||   ||||||||||||||||    
T  13804956 tctttaaggattccgaattaagaaatcattccttcaaaaagtcaaatacttcgatttccaatgcattga 13804888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 209 - 296
Target Start/End: Complemental strand, 41571682 - 41571594
Alignment:
Q  209 gggcactctttaaggattcctaataaagaaattatt-ctttaaaaaagtcaaaaactctaatttccaatgcattgatttcataaatttt 296  Q
    |||||||||||||| ||||| ||  ||||||||||| | ||||||||| |||||| |  |||||| |||||||||||| ||| ||||||    
T  41571682 gggcactctttaagcattccaaaagaagaaattatttcattaaaaaagccaaaaatttcaatttcgaatgcattgattacattaatttt 41571594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 291 - 331
Target Start/End: Complemental strand, 52543934 - 52543894
Alignment:
Q  291 aattttgacaaaaacttactatttaaagttactaaacaata 331  Q
    |||||| ||||||||||||||||||| ||||||||||||||    
T  52543934 aatttttacaaaaacttactatttaaggttactaaacaata 52543894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 211 - 254
Target Start/End: Complemental strand, 25299149 - 25299106
Alignment:
Q  211 gcactctttaaggattcctaataaagaaattattctttaaaaaa 254  Q
    ||||| |||||| ||| |||||||||||||||||||||||||||    
T  25299149 gcactttttaagcatttctaataaagaaattattctttaaaaaa 25299106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 238 - 285
Target Start/End: Complemental strand, 46711999 - 46711952
Alignment:
Q  238 aattattctttaaaaaagtcaaaaactctaatttccaatgcattgatt 285  Q
    ||||||||||||||||||||||| | | | ||||||||||||||||||    
T  46711999 aattattctttaaaaaagtcaaacattttgatttccaatgcattgatt 46711952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 217 - 283
Target Start/End: Original strand, 31294370 - 31294436
Alignment:
Q  217 tttaaggattcctaataaagaaattattctttaaaaaagtcaaaaactctaatttccaatgcattga 283  Q
    ||||||| || ||||| ||||||||||||||| |||||||  || ||| |||||||| |||||||||    
T  31294370 tttaaggttttctaattaagaaattattctttgaaaaagtttaacactttaatttccgatgcattga 31294436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 211 - 256
Target Start/End: Original strand, 3973807 - 3973852
Alignment:
Q  211 gcactctttaaggattcctaataaagaaattattctttaaaaaagt 256  Q
    ||||||||||||| |||| ||| |||||||||||| ||||||||||    
T  3973807 gcactctttaaggtttcccaattaagaaattattccttaaaaaagt 3973852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 211 - 256
Target Start/End: Complemental strand, 4009598 - 4009553
Alignment:
Q  211 gcactctttaaggattcctaataaagaaattattctttaaaaaagt 256  Q
    ||||||||||||| |||| ||| |||||||||||| ||||||||||    
T  4009598 gcactctttaaggtttcccaattaagaaattattccttaaaaaagt 4009553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 209 - 285
Target Start/End: Complemental strand, 30464071 - 30463995
Alignment:
Q  209 gggcactctttaaggattcctaataaagaaattattctttaaaaaagtcaaaaactctaatttccaatgcattgatt 285  Q
    |||||||| ||||| ||||| ||  ||||||||||||| ||||||||||||| | |  |||||  ||||||||||||    
T  30464071 gggcactcgttaagcattccaaaagaagaaattattctataaaaaagtcaaacatttcaatttttaatgcattgatt 30463995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 212 - 256
Target Start/End: Complemental strand, 53766803 - 53766759
Alignment:
Q  212 cactctttaaggattcctaataaagaaattattctttaaaaaagt 256  Q
    ||||||||||| ||||||||| || |||||||| |||||||||||    
T  53766803 cactctttaagtattcctaatgaaaaaattattttttaaaaaagt 53766759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 99; Significance: 1e-48; HSPs: 26)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 208 - 330
Target Start/End: Original strand, 3483031 - 3483153
Alignment:
Q  208 agggcactctttaaggattcctaataaagaaattattctttaaaaaagtcaaaaactctaatttccaatgcattgatttcataaattttgacaaaaactt 307  Q
    ||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||||| ||||||||||||||    
T  3483031 agggcgctctttaaggatttctaataaagaaattattctttaaaaaagtcaaaaactccaattttcaatgcatcgatttcataaactttgacaaaaactt 3483130  T
Q  308 actatttaaagttactaaacaat 330  Q
    |||||||||||||||||||||||    
T  3483131 actatttaaagttactaaacaat 3483153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 217 - 330
Target Start/End: Complemental strand, 25670877 - 25670764
Alignment:
Q  217 tttaaggattcctaataaagaaattattctttaaaaaagtcaaaaactctaatttccaatgcattgatttcataaattttgacaaaaacttactatttaa 316  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||| |||||||||||||||||||    
T  25670877 tttaaggatttctaataaagaaattattctttaaaaaagtcaaaaactccaattttcaatgcattgatttcataaactttaacaaaaacttactatttaa 25670778  T
Q  317 agttactaaacaat 330  Q
    ||||||||||||||    
T  25670777 agttactaaacaat 25670764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 208 - 330
Target Start/End: Complemental strand, 43492244 - 43492121
Alignment:
Q  208 agggcactctttaaggattcctaataaagaaattattctttaaaaaa-gtcaaaaactctaatttccaatgcattgatttcataaattttgacaaaaact 306  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||  |||||||||||||||||||||||||| ||||||||||| |    
T  43492244 agggcactctttaaggattcctaataaagaaattattttttaaaaaaagtcaaaaacttcaatttccaatgcattgatttcataaactttgacaaaaatt 43492145  T
Q  307 tactatttaaagttactaaacaat 330  Q
    ||||||||||||||||||| ||||    
T  43492144 tactatttaaagttactaagcaat 43492121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 212 - 330
Target Start/End: Original strand, 45925487 - 45925606
Alignment:
Q  212 cactctttaaggattcctaataaagaaa-ttattctttaaaaaagtcaaaaactctaatttccaatgcattgatttcataaattttgacaaaaacttact 310  Q
    |||||||||||||||| ||||||||||| ||||||||||||||||||||||| || |||||||||| ||||||||||||||| |||||||||||||||||    
T  45925487 cactctttaaggattcttaataaagaaaattattctttaaaaaagtcaaaaattcaaatttccaatacattgatttcataaactttgacaaaaacttact 45925586  T
Q  311 atttaaagttactaaacaat 330  Q
    ||||||||||||||||||||    
T  45925587 atttaaagttactaaacaat 45925606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 86; E-Value: 7e-41
Query Start/End: Original strand, 217 - 330
Target Start/End: Complemental strand, 698932 - 698819
Alignment:
Q  217 tttaaggattcctaataaagaaattattctttaaaaaagtcaaaaactctaatttccaatgcattgatttcataaattttgacaaaaacttactatttaa 316  Q
    ||||||||||  ||||||||||||||||| |||||||||| |||||||| |||||||||||||||||||||||||| ||||| |||||||||||||||||    
T  698932 tttaaggatttttaataaagaaattattcattaaaaaagttaaaaactcaaatttccaatgcattgatttcataaactttgataaaaacttactatttaa 698833  T
Q  317 agttactaaacaat 330  Q
    ||||||||||||||    
T  698832 agttactaaacaat 698819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 211 - 331
Target Start/End: Complemental strand, 44958417 - 44958299
Alignment:
Q  211 gcactctttaaggattcctaataaagaaattattctttaaaaaagtcaaaaactctaatttccaatgcattgatttcataaattttgacaaaaacttact 310  Q
    |||||||||||| ||| |||||||| ||||||||||||||||| ||||||||||| ||||| |||||||||||||||||||| ||| ||||||| |||||    
T  44958417 gcactctttaagaattactaataaa-aaattattctttaaaaa-gtcaaaaactccaattttcaatgcattgatttcataaactttaacaaaaatttact 44958320  T
Q  311 atttaaagttactaaacaata 331  Q
    |||||||||||||||||||||    
T  44958319 atttaaagttactaaacaata 44958299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 212 - 330
Target Start/End: Original strand, 28188617 - 28188734
Alignment:
Q  212 cactctttaaggattcctaataaagaaattattctttaaaaaagtcaaaaactctaatttccaatgcattgatttcataaattttgacaaaaacttacta 311  Q
    |||||||||| ||||||||||||| |||   |||||||||||| |||||||||  |||||||||||||||||||||||||| ||| ||||||||||||||    
T  28188617 cactctttaatgattcctaataaaaaaaaatttctttaaaaaaatcaaaaacttcaatttccaatgcattgatttcataaa-tttaacaaaaacttacta 28188715  T
Q  312 tttaaagttactaaacaat 330  Q
    |||||||||| ||||||||    
T  28188716 tttaaagttattaaacaat 28188734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 212 - 330
Target Start/End: Original strand, 30494053 - 30494172
Alignment:
Q  212 cactctttaaggattcctaataaagaaattattctttaaaaaagtcaaaaactctaatttccaatgcattgatttcataaattttgacaaaaacttacta 311  Q
    |||||||||| ||||  ||||||||| |||||||||||||||||| ||||||| ||||||||||| ||||||||||||||  ||| ||||||||||||||    
T  30494053 cactctttaaagatttttaataaagagattattctttaaaaaagtaaaaaactttaatttccaatacattgatttcataatctttaacaaaaacttacta 30494152  T
Q  312 ttt-aaagttactaaacaat 330  Q
    ||| ||| ||||||||||||    
T  30494153 tttaaaatttactaaacaat 30494172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 212 - 330
Target Start/End: Original strand, 49003643 - 49003762
Alignment:
Q  212 cactctttaaggattcctaataaagaaattattcttta--aaaaagtcaaaaactctaatttccaatgcattgatttcataaattttgacaaaaacttac 309  Q
    |||| ||||||||||| ||||||| |||||||| |||   |||||||||||||||||||||||||||| ||| |||||||||| ||||||||||| ||||    
T  49003643 cactatttaaggattcataataaaaaaattatttttttttaaaaagtcaaaaactctaatttccaatgtatt-atttcataaactttgacaaaaatttac 49003741  T
Q  310 tatttaaagttactaaacaat 330  Q
    |||||||||||| ||||||||    
T  49003742 tatttaaagttattaaacaat 49003762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 231 - 332
Target Start/End: Complemental strand, 5224973 - 5224872
Alignment:
Q  231 ataaagaaattattctttaaaaaagtcaaaaactctaatttccaatgcattgatttcataaattttgacaaaaacttactatttaaagttactaaacaat 330  Q
    ||||| |||| ||||||||||||||| |||||||| ||||| |||||||||||||| ||||| ||| |||||||||||||||||||| ||| ||||||||    
T  5224973 ataaaaaaatcattctttaaaaaagttaaaaactcaaatttgcaatgcattgattttataaactttaacaaaaacttactatttaaaattattaaacaat 5224874  T
Q  331 ac 332  Q
    ||    
T  5224873 ac 5224872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 230 - 330
Target Start/End: Original strand, 31822401 - 31822501
Alignment:
Q  230 aataaagaaattattctttaaaaaagtcaaaaactctaatttccaatgcattgatttcataaattttgacaaaaacttactatttaaagttactaaacaa 329  Q
    |||||| |||||||| ||||||||||| |||||||| |||||  ||||||||||||| ||||| |||||||||| |||||||| ||||||||||||||||    
T  31822401 aataaaaaaattattttttaaaaaagttaaaaactccaatttttaatgcattgattttataaactttgacaaaagcttactatctaaagttactaaacaa 31822500  T
Q  330 t 330  Q
    |    
T  31822501 t 31822501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 209 - 296
Target Start/End: Complemental strand, 4039716 - 4039629
Alignment:
Q  209 gggcactctttaaggattcctaataaagaaattattctttaaaaaagtcaaaaactctaatttccaatgcattgatttcataaatttt 296  Q
    |||||||||||||||||||| ||  || |||||||| | ||||||||||||| | |   |||||||||||||||||| |||| |||||    
T  4039716 gggcactctttaaggattccaaaagaataaattattttataaaaaagtcaaatatttcgatttccaatgcattgattacatatatttt 4039629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 209 - 296
Target Start/End: Complemental strand, 6983104 - 6983017
Alignment:
Q  209 gggcactctttaaggattcctaataaagaaattattctttaaaaaagtcaaaaactctaatttccaatgcattgatttcataaatttt 296  Q
    |||||||||||||| ||||| ||| |||||||||||| |||||| ||||||| | |  ||||| ||||||||||  | ||||||||||    
T  6983104 gggcactctttaagtattccaaattaagaaattattcattaaaagagtcaaatatttcaattttcaatgcattggatacataaatttt 6983017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 208 - 283
Target Start/End: Original strand, 51681631 - 51681706
Alignment:
Q  208 agggcactctttaaggattcctaataaagaaattattctttaaaaaagtcaaaaactctaatttccaatgcattga 283  Q
    |||||||||||||||| |||| ||| ||||||||||||||| |||||||  || ||| ||||||||  ||||||||    
T  51681631 agggcactctttaaggtttcccaattaagaaattattctttgaaaaagtttaacactttaatttccggtgcattga 51681706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 219 - 279
Target Start/End: Complemental strand, 29523661 - 29523601
Alignment:
Q  219 taaggattcctaataaagaaattattctttaaaaaagtcaaaaactctaatttccaatgca 279  Q
    |||| ||||||||||||||||| ||| ||||||||||  |||||||  |||||||||||||    
T  29523661 taagcattcctaataaagaaataattttttaaaaaaggtaaaaacttcaatttccaatgca 29523601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 210 - 318
Target Start/End: Complemental strand, 40203191 - 40203083
Alignment:
Q  210 ggcactctttaaggattcctaataaagaaattattctttaaaaaagtcaaaaactctaatttccaatgcattgatttcataaattttgacaaaaacttac 309  Q
    ||||||||||||||||| | ||  |||||||||||   ||||||||||||| | |  ||||||||||||||||||| || | ||||| | | ||| ||||    
T  40203191 ggcactctttaaggattacaaaacaagaaattatttcataaaaaagtcaaatatttcaatttccaatgcattgattacacatattttcagacaaagttac 40203092  T
Q  310 tatttaaag 318  Q
     ||||||||    
T  40203091 catttaaag 40203083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 211 - 285
Target Start/End: Original strand, 34445663 - 34445737
Alignment:
Q  211 gcactctttaaggattcctaataaagaaattattctttaaaaaagtcaaaaactctaatttccaatgcattgatt 285  Q
    |||||||||||||||||| ||  ||||||||| | | ||||||||||||| | |   ||||||||||||||||||    
T  34445663 gcactctttaaggattccaaaagaagaaattaatttataaaaaagtcaaatatttcgatttccaatgcattgatt 34445737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 210 - 260
Target Start/End: Original strand, 46803508 - 46803558
Alignment:
Q  210 ggcactctttaaggattcctaataaagaaattattctttaaaaaagtcaaa 260  Q
    |||||||||||||||||||||||  ||||| |||| |||| ||||||||||    
T  46803508 ggcactctttaaggattcctaatttagaaagtattttttataaaagtcaaa 46803558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 212 - 281
Target Start/End: Complemental strand, 11411078 - 11411009
Alignment:
Q  212 cactctttaaggattcctaataaagaaattattctttaaaaaagtcaaaaactctaatttccaatgcatt 281  Q
    ||||||||||||||| || || |||||||||||| || |||||||  || ||| ||||||||||| ||||    
T  11411078 cactctttaaggatttctcattaagaaattattcattgaaaaagttcaatactttaatttccaatacatt 11411009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 239 - 296
Target Start/End: Original strand, 17112728 - 17112785
Alignment:
Q  239 attattctttaaaaaagtcaaaaactctaatttccaatgcattgatttcataaatttt 296  Q
    ||||||||| |||||||||||| | | | |||||||||||||||||| |||| |||||    
T  17112728 attattcttcaaaaaagtcaaatattttgatttccaatgcattgattacatatatttt 17112785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 206 - 239
Target Start/End: Complemental strand, 36331699 - 36331666
Alignment:
Q  206 ttagggcactctttaaggattcctaataaagaaa 239  Q
    ||||||||||||||||||||||||||| ||||||    
T  36331699 ttagggcactctttaaggattcctaattaagaaa 36331666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 235 - 264
Target Start/End: Complemental strand, 50470788 - 50470759
Alignment:
Q  235 agaaattattctttaaaaaagtcaaaaact 264  Q
    ||||||||||||||||||||||||||||||    
T  50470788 agaaattattctttaaaaaagtcaaaaact 50470759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 213 - 285
Target Start/End: Original strand, 31652619 - 31652690
Alignment:
Q  213 actctttaaggattcctaataaagaaattattctttaaaaaagtcaaaaactctaatttccaatgcattgatt 285  Q
    |||||||||||||| | || |||||||||||| | ||||||||||||| | | |||||||| ||||| |||||    
T  31652619 actctttaaggatttcaaa-aaagaaattattttataaaaaagtcaaatattttaatttccgatgcaatgatt 31652690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 209 - 285
Target Start/End: Original strand, 40377034 - 40377110
Alignment:
Q  209 gggcactctttaaggattcctaataaagaaattattctttaaaaaagtcaaaaactctaatttccaatgcattgatt 285  Q
    |||||||||||||||||||| ||  ||||||| ||| | ||||||||||||| | | | ||| ||||| ||||||||    
T  40377034 gggcactctttaaggattccaaaagaagaaataattttataaaaaagtcaaatattttgattcccaattcattgatt 40377110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 212 - 260
Target Start/End: Original strand, 43512772 - 43512820
Alignment:
Q  212 cactctttaaggattcctaataaagaaattattctttaaaaaagtcaaa 260  Q
    |||||||||||||||||  || ||  |||||||||||||||||||||||    
T  43512772 cactctttaaggattccatattaattaattattctttaaaaaagtcaaa 43512820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 209 - 285
Target Start/End: Original strand, 45584531 - 45584607
Alignment:
Q  209 gggcactctttaaggattcctaataaagaaattattctttaaaaaagtcaaaaactctaatttccaatgcattgatt 285  Q
    |||||||||||||||||||| ||  ||||||||||| | ||||||||| ||| | | |||||||  ||| |||||||    
T  45584531 gggcactctttaaggattccaaaagaagaaattattttataaaaaagttaaatattttaatttctgatgtattgatt 45584607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 95; Significance: 3e-46; HSPs: 41)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 95; E-Value: 3e-46
Query Start/End: Original strand, 205 - 330
Target Start/End: Complemental strand, 21988581 - 21988455
Alignment:
Q  205 tttagggcactctttaaggattcctaataaagaaattattctttaaaaaagtcaaaaactctaa-tttccaatgcattgatttcataaattttgacaaaa 303  Q
    ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| || ||||||||| |||||||||||||| ||||||||||    
T  21988581 tttagggcactctttaaagattcataataaagaaattattctttaaaaaagtcaaaaactccaattttccaatgtattgatttcataaactttgacaaaa 21988482  T
Q  304 acttactatttaaagttactaaacaat 330  Q
    |||||||||||||||||| ||||||||    
T  21988481 acttactatttaaagttattaaacaat 21988455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 160 - 326
Target Start/End: Original strand, 28695717 - 28695875
Alignment:
Q  160 attaattattttattatgggttttgttaacgagtgccctaagggttttagggcactctttaaggattcctaataaagaaattattctttaaaaaagtcaa 259  Q
    ||||| |||||| |||||||| ||||||||||||||||||||||        ||||||||||||||| ||||||||||||||||| ||||||||||||||    
T  28695717 attaaatatttttttatgggtcttgttaacgagtgccctaaggg--------cactctttaaggattactaataaagaaattattttttaaaaaagtcaa 28695808  T
Q  260 aaactctaatttccaatgcattgatttcataaattttgacaaaaacttactatttaaagttactaaa 326  Q
    |||||  ||||||||||| ||| |||||||||| ||||||||||| |||||||||||||||| ||||    
T  28695809 aaacttcaatttccaatgtattaatttcataaactttgacaaaaatttactatttaaagttattaaa 28695875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 212 - 323
Target Start/End: Complemental strand, 46088627 - 46088516
Alignment:
Q  212 cactctttaaggattcctaataaagaaattattctttaaaaaagtcaaaaactctaatttccaatgcattgatttcataaattttgacaaaaacttacta 311  Q
    ||||||||||| |||||||||||||||||||||| |||||||| |||||||||  |||||||||||||||||||||||||| ||||||||||||||||||    
T  46088627 cactctttaagaattcctaataaagaaattattccttaaaaaaatcaaaaacttcaatttccaatgcattgatttcataaactttgacaaaaacttacta 46088528  T
Q  312 tttaaagttact 323  Q
    ||||||||||||    
T  46088527 tttaaagttact 46088516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 87; E-Value: 2e-41
Query Start/End: Original strand, 177 - 332
Target Start/End: Original strand, 5047172 - 5047319
Alignment:
Q  177 gggttttgttaacgagtgccctaagggttttagggcactctttaaggattcctaataaagaaattattctttaaaaaagtcaaaaactctaatttccaat 276  Q
    |||||||||||||||||||||||||||        ||||| ||||||||| |||||||||||||||||| ||| |||||||||||| |  ||||||||||    
T  5047172 gggttttgttaacgagtgccctaaggg--------cactcattaaggatttctaataaagaaattattcattacaaaagtcaaaaatttcaatttccaat 5047263  T
Q  277 gcattgatttcataaattttgacaaaaacttactatttaaagttactaaacaatac 332  Q
    |||||||||||||||| ||| | |||||||||||||||||||||||||||||||||    
T  5047264 gcattgatttcataaactttaaaaaaaacttactatttaaagttactaaacaatac 5047319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 81; E-Value: 7e-38
Query Start/End: Original strand, 206 - 330
Target Start/End: Original strand, 46521493 - 46521617
Alignment:
Q  206 ttagggcactctttaaggattcctaataaagaaattattctttaaaaaagtcaaaaactctaatttccaatgcattgatttcataaattttgacaaaaac 305  Q
    |||| ||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |||||  ||||||||||||||||||| ||| |||||||     
T  46521493 ttagagcactctttaaggattcctaataaataaattattctttaaaaaagttaaaaactccaatttttaatgcattgatttcataaactttaacaaaaat 46521592  T
Q  306 ttactatttaaagttactaaacaat 330  Q
    ||| |||||||||| ||||||||||    
T  46521593 ttattatttaaagtcactaaacaat 46521617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 212 - 329
Target Start/End: Complemental strand, 20180334 - 20180217
Alignment:
Q  212 cactctttaaggattcctaataaagaaattattctttaaaaaagtcaaaaactctaatttccaatgcattgatttcataaattttgacaaaaacttacta 311  Q
    ||||||||||| |||| ||||||| |||||||| |||||||||||||||||||| ||||| ||||||||| |||||||||| ||||||||||| ||||||    
T  20180334 cactctttaagaattcttaataaataaattattatttaaaaaagtcaaaaactccaattttcaatgcattaatttcataaactttgacaaaaatttacta 20180235  T
Q  312 tttaaagttactaaacaa 329  Q
    ||||||||| ||||||||    
T  20180234 tttaaagttcctaaacaa 20180217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 229 - 330
Target Start/End: Original strand, 54495493 - 54495594
Alignment:
Q  229 taataaagaaattattctttaaaaaagtcaaaaactctaatttccaatgcattgatttcataaattttgacaaaaacttactatttaaagttactaaaca 328  Q
    |||||||||||||||| ||||||||||| |||||||| ||||| |||||||||||||||||||| ||||| |||||||||||||||||||||||||||||    
T  54495493 taataaagaaattattttttaaaaaagttaaaaactccaattttcaatgcattgatttcataaactttgataaaaacttactatttaaagttactaaaca 54495592  T
Q  329 at 330  Q
    ||    
T  54495593 at 54495594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 213 - 331
Target Start/End: Complemental strand, 33266930 - 33266811
Alignment:
Q  213 actctttaaggattcctaataaagaaattattctttaaaaaagtcaaaaactctaatttccaatgcattgatttcataaa-ttttgacaaaaacttacta 311  Q
    ||||||||| ||||  |||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||| |||| | || |||||||||    
T  33266930 actctttaaagatttttaataaagaaattattctttaaaaaagtcaaaaactttaatttccaatggattgatttcataaacttttaaaaataacttacta 33266831  T
Q  312 tttaaagttactaaacaata 331  Q
    ||||||||||||||| ||||    
T  33266830 tttaaagttactaaataata 33266811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 71; E-Value: 6e-32
Query Start/End: Original strand, 235 - 321
Target Start/End: Complemental strand, 30161435 - 30161349
Alignment:
Q  235 agaaattattctttaaaaaagtcaaaaactctaatttccaatgcattgatttcataaattttgacaaaaacttactatttaaagtta 321  Q
    ||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||| ||||||||||||||||||||||||    
T  30161435 agaaattattctttaaaaaagtcaaaaactccaatttacaatgcattgatttcataaactttaacaaaaacttactatttaaagtta 30161349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 210 - 330
Target Start/End: Original strand, 24753920 - 24754041
Alignment:
Q  210 ggcactctttaaggattcctaataaagaaattattctttaaaaaagtcaaaaa-ctctaatttccaatgcattgatttcataaattttgacaaaaactta 308  Q
    ||||||||||||  ||| |||||||||||||||||| |||||||||| ||||| || ||||||||||||||||||||||||||| ||| | ||||| |||    
T  24753920 ggcactctttaaaaatttctaataaagaaattattccttaaaaaagtaaaaaaactttaatttccaatgcattgatttcataaactttcataaaaattta 24754019  T
Q  309 ctatttaaagttactaaacaat 330  Q
    |||||||||||| |||||||||    
T  24754020 ctatttaaagtttctaaacaat 24754041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 217 - 330
Target Start/End: Complemental strand, 25751807 - 25751694
Alignment:
Q  217 tttaaggattcctaataaagaaattattctttaaaaaagtcaaaaactctaatttccaatgcattgatttcataaattttgacaaaaacttactatttaa 316  Q
    |||||||||| ||||||||||||||||||||||||||||||||||| | |||||| ||||||||| ||| |||||  ||| | |||||||||||||||||    
T  25751807 tttaaggatttctaataaagaaattattctttaaaaaagtcaaaaaatttaattttcaatgcattaattgcataagctttaataaaaacttactatttaa 25751708  T
Q  317 agttactaaacaat 330  Q
    ||||| ||||||||    
T  25751707 agttattaaacaat 25751694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 210 - 292
Target Start/End: Complemental strand, 48079377 - 48079296
Alignment:
Q  210 ggcactctttaaggattcctaataaagaaattattctttaaaaaagtcaaaaactctaatttccaatgcattgatttcataaa 292  Q
    |||||||||||||||||| |||||||||||||||||||||||||| | |||||||| ||||||||||||||||||||||||||    
T  48079377 ggcactctttaaggattcataataaagaaattattctttaaaaaa-ttaaaaactccaatttccaatgcattgatttcataaa 48079296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 61; E-Value: 6e-26
Query Start/End: Original strand, 208 - 304
Target Start/End: Complemental strand, 20176679 - 20176583
Alignment:
Q  208 agggcactctttaaggattcctaataaagaaattattctttaaaaaagtcaaaaactctaatttccaatgcattgatttcataaattttgacaaaaa 304  Q
    ||||||||| |||||||||| ||||||||||||||||| |||||||| |||||||||| ||||| ||||||||||||||||| || ||||| |||||    
T  20176679 agggcactccttaaggattcataataaagaaattattccttaaaaaattcaaaaactccaattttcaatgcattgatttcatgaactttgagaaaaa 20176583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 212 - 303
Target Start/End: Original strand, 49360039 - 49360130
Alignment:
Q  212 cactctttaaggattcctaataaagaaattattctttaaaaaagtcaaaaactctaatttccaatgcattgatttcataaattttgacaaaa 303  Q
    |||| |||||| |||| || |||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||| | ||||||||||    
T  49360039 cactttttaagaattcatagtaaagaaaatattctttaaaaaagtcaaaaactccaatttccaatgcattgatttcatacactttgacaaaa 49360130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 208 - 292
Target Start/End: Original strand, 49587756 - 49587841
Alignment:
Q  208 agggcactctttaaggattcctaataaagaaatt-attctttaaaa-aagtcaaaaactctaatttccaatgcattgatttcataaa 292  Q
    ||||||||||| |||||||||||||||||||||| ||||||||||| ||||||||||||||||||| ||||||||||||||||||||    
T  49587756 agggcactctt-aaggattcctaataaagaaatttattctttaaaaaaagtcaaaaactctaattttcaatgcattgatttcataaa 49587841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 210 - 330
Target Start/End: Original strand, 20787387 - 20787506
Alignment:
Q  210 ggcactctttaaggattcctaataaagaaattattctttaaaaaagtcaaaaactctaatttccaatgcattgatttcataaattttgacaaaaacttac 309  Q
    |||||||||||||||||  ||||||| |||||||| ||||||| |||||||||||  ||||| |||| ||||||||||||||| ||||||||||  ||||    
T  20787387 ggcactctttaaggatttttaataaaaaaattattttttaaaa-agtcaaaaacttcaattttcaatacattgatttcataaactttgacaaaattttac 20787485  T
Q  310 tatttaaagttactaaacaat 330  Q
     ||||||| | ||||||||||    
T  20787486 catttaaaatcactaaacaat 20787506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 211 - 311
Target Start/End: Complemental strand, 23135545 - 23135445
Alignment:
Q  211 gcactctttaaggattcctaataaagaaattattctttaaaaaagtcaaaaactctaatttccaatgcattgatttcataaattttgacaaaaacttact 310  Q
    |||||||||||||||| |||||||| ||||||||| |||||||| | || ||||| ||||||| ||||||| |||||||||| ||| |||||||||||||    
T  23135545 gcactctttaaggatttctaataaaaaaattattccttaaaaaaataaataactcaaatttccgatgcattaatttcataaactttaacaaaaacttact 23135446  T
Q  311 a 311  Q
    |    
T  23135445 a 23135445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 239 - 330
Target Start/End: Complemental strand, 5091926 - 5091836
Alignment:
Q  239 attattctttaaaaaagtcaaaaactctaatttccaatgcattgatttcataaattttgacaaaaacttactatttaaagttactaaacaat 330  Q
    ||||||||||||||||||||||||||  ||||| ||||||||||| |||||||| ||| ||||||| ||| |||||||||||||||||||||    
T  5091926 attattctttaaaaaagtcaaaaacttcaattttcaatgcattga-ttcataaaatttaacaaaaatttattatttaaagttactaaacaat 5091836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 211 - 304
Target Start/End: Complemental strand, 41690263 - 41690168
Alignment:
Q  211 gcactctttaaggattcctaataaagaaattattctttaa-aaaagtc-aaaaactctaatttccaatgcattgatttcataaattttgacaaaaa 304  Q
    ||||| |||||||||||||||||||||||||||||||||| |||| || ||||| ||||||||||||||||||||||| ||||| ||||| |||||    
T  41690263 gcactttttaaggattcctaataaagaaattattctttaaaaaaaatcaaaaaattctaatttccaatgcattgattttataaactttgataaaaa 41690168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 212 - 310
Target Start/End: Complemental strand, 34124628 - 34124531
Alignment:
Q  212 cactctttaaggattcctaataaagaaattattctttaaaaaagtcaaaaactctaatttccaatgcattgatttcataaattttgacaaaaacttact 310  Q
    |||| |||||||||| ||||||||||||||||| |||||||||||| |||| |  ||||| |||||||||||||||||||| ||||||||||| |||||    
T  34124628 cactttttaaggatttctaataaagaaattattttttaaaaaagtc-aaaattacaattttcaatgcattgatttcataaactttgacaaaaatttact 34124531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 256 - 330
Target Start/End: Original strand, 10042885 - 10042959
Alignment:
Q  256 tcaaaaactctaatttccaatgcattgatttcataaattttgacaaaaacttactatttaaagttactaaacaat 330  Q
    |||||||||  ||| | |||||||||||||||||||||||| | |||||||||||||||||||||| ||||||||    
T  10042885 tcaaaaacttcaatgttcaatgcattgatttcataaattttaataaaaacttactatttaaagttattaaacaat 10042959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 209 - 308
Target Start/End: Complemental strand, 23016336 - 23016237
Alignment:
Q  209 gggcactctttaaggattcctaataaagaaattattctttaaaaaagtcaaaaactctaatttccaatgcattgatttcataaattttgacaaaaactta 308  Q
    ||||||||||| || ||||| ||| ||||||||||| |||||| |||||||| | |  ||||||||||||||||| | |||| | ||| | |||||||||    
T  23016336 gggcactctttgagcattccaaattaagaaattattatttaaagaagtcaaacatttcaatttccaatgcattgaatacatagacttttataaaaactta 23016237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 209 - 296
Target Start/End: Original strand, 53919860 - 53919947
Alignment:
Q  209 gggcactctttaaggattcctaataaagaaattattctttaaaaaagtcaaaaactctaatttccaatgcattgatttcataaatttt 296  Q
    |||||||||||||| ||| | ||  || |||||||||| ||||||||||||||| |  ||||||| ||||||||||| ||| ||||||    
T  53919860 gggcactctttaagcatttcaaaagaataaattattctataaaaaagtcaaaaatttcaatttccgatgcattgattgcattaatttt 53919947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 298 - 330
Target Start/End: Complemental strand, 23135439 - 23135407
Alignment:
Q  298 acaaaaacttactatttaaagttactaaacaat 330  Q
    |||||||||||||||||||||||||||||||||    
T  23135439 acaaaaacttactatttaaagttactaaacaat 23135407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 211 - 319
Target Start/End: Complemental strand, 41370280 - 41370172
Alignment:
Q  211 gcactctttaaggattcctaataaagaaattattctttaaaaaagtcaaaaactctaatttccaatgcattgatttcataaattttgacaaaaacttact 310  Q
    |||||| ||||| | ||| ||| |||||||||||  | |||||||| ||| | |  ||||| ||||||||||||| || ||||||| | |||||||||||    
T  41370280 gcactcattaagcaatccaaattaagaaattatttctcaaaaaagttaaatatttcaattttcaatgcattgattacacaaattttcataaaaacttact 41370181  T
Q  311 atttaaagt 319  Q
    ||| |||||    
T  41370180 attcaaagt 41370172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 211 - 319
Target Start/End: Complemental strand, 49011995 - 49011887
Alignment:
Q  211 gcactctttaaggattcctaataaagaaattattctttaaaaaagtcaaaaactctaatttccaatgcattgatttcataaattttgacaaaaacttact 310  Q
    ||||||||||||||||  |||| |||||  ||||| ||||||||||  || |||  ||||| | ||||||| | | || || |||| |||||||||||||    
T  49011995 gcactctttaaggatttttaatcaagaatctattcattaaaaaagtttaatacttcaattttcgatgcattaaatgcacaagttttcacaaaaacttact 49011896  T
Q  311 atttaaagt 319  Q
    |||||||||    
T  49011895 atttaaagt 49011887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 211 - 254
Target Start/End: Complemental strand, 949994 - 949951
Alignment:
Q  211 gcactctttaaggattcctaataaagaaattattctttaaaaaa 254  Q
    ||||||||||||  |||||||| |||||||||||||||||||||    
T  949994 gcactctttaagtgttcctaatgaagaaattattctttaaaaaa 949951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 212 - 283
Target Start/End: Original strand, 40071304 - 40071375
Alignment:
Q  212 cactctttaaggattcctaataaagaaattattctttaaaaaagtcaaaaactctaatttccaatgcattga 283  Q
    ||||||||||||||| ||||| |||||||||| | || |||||||| || |||  ||||||||| |||||||    
T  40071304 cactctttaaggatttctaattaagaaattatgcattgaaaaagtccaatacttcaatttccaacgcattga 40071375  T

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Target: chr4; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 208 - 283
Target Start/End: Complemental strand, 53737909 - 53737834
Alignment:
Q  208 agggcactctttaaggattcctaataaagaaattattctttaaaaaagtcaaaaactctaatttccaatgcattga 283  Q
    |||||||||||||||  |||| ||  ||||||||||||||||||||| ||||| | |   ||||||||||||||||    
T  53737909 agggcactctttaagcgttccaaaataagaaattattctttaaaaaattcaaatatttcgatttccaatgcattga 53737834  T

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Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 212 - 254
Target Start/End: Complemental strand, 8607718 - 8607676
Alignment:
Q  212 cactctttaaggattcctaataaagaaattattctttaaaaaa 254  Q
    ||||||||||  |||| ||||||||||||||||||||||||||    
T  8607718 cactctttaaacattcttaataaagaaattattctttaaaaaa 8607676  T

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Target: chr4; HSP #31
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 211 - 317
Target Start/End: Original strand, 19652627 - 19652733
Alignment:
Q  211 gcactctttaaggattcctaataaagaaattattctttaaaaaagtcaaaaactctaatttccaatgcattgatttcataaattttgacaaaaacttact 310  Q
    ||||||||||||| |||  ||| |||| ||||||| || |||| ||  || | | |||||||||||||||||| | || ||||||| | |||||||||||    
T  19652627 gcactctttaaggtttctaaattaagatattattcattgaaaatgtataatagtttaatttccaatgcattgaatgcacaaattttcataaaaacttact 19652726  T
Q  311 atttaaa 317  Q
    || ||||    
T  19652727 atctaaa 19652733  T

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Target: chr4; HSP #32
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 206 - 256
Target Start/End: Original strand, 31655492 - 31655542
Alignment:
Q  206 ttagggcactctttaaggattcctaataaagaaattattctttaaaaaagt 256  Q
    |||||||||| ||||||| |||| ||| || ||||||||||||||||||||    
T  31655492 ttagggcactttttaaggtttcccaattaaaaaattattctttaaaaaagt 31655542  T

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Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 234 - 283
Target Start/End: Original strand, 39279209 - 39279258
Alignment:
Q  234 aagaaattattctttaaaaaagtcaaaaactctaatttccaatgcattga 283  Q
    |||||||||||| ||||||||||||||  ||  |||||||||||||||||    
T  39279209 aagaaattattccttaaaaaagtcaaattcttcaatttccaatgcattga 39279258  T

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Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 217 - 258
Target Start/End: Complemental strand, 41415857 - 41415816
Alignment:
Q  217 tttaaggattcctaataaagaaattattctttaaaaaagtca 258  Q
    |||||||||||| |||| ||||| ||||||||||||||||||    
T  41415857 tttaaggattccaaatatagaaaatattctttaaaaaagtca 41415816  T

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Target: chr4; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 210 - 279
Target Start/End: Original strand, 51291079 - 51291148
Alignment:
Q  210 ggcactctttaaggattcctaataaagaaattattctttaaaaaagtcaaaaactctaatttccaatgca 279  Q
    ||||||||||||  ||||||||| ||||| ||||||||||||| | | ||| |||  |||||||||||||    
T  51291079 ggcactctttaaacattcctaatgaagaagttattctttaaaataattaaagacttcaatttccaatgca 51291148  T

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Target: chr4; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 236 - 281
Target Start/End: Original strand, 52014590 - 52014635
Alignment:
Q  236 gaaattattctttaaaaaagtcaaaaactctaatttccaatgcatt 281  Q
    |||||||||| |||||||||||||| | || |||||||||||||||    
T  52014590 gaaattattcattaaaaaagtcaaataatccaatttccaatgcatt 52014635  T

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Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 213 - 281
Target Start/End: Original strand, 2818355 - 2818423
Alignment:
Q  213 actctttaaggattcctaataaagaaattattctttaaaaaagtcaaaaactctaatttccaatgcatt 281  Q
    |||||||||| |||   ||| ||||||||||||||| |||| |||||||| |  |||||||||||||||    
T  2818355 actctttaagcattttaaattaagaaattattcttttaaaaggtcaaaaagttcaatttccaatgcatt 2818423  T

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Target: chr4; HSP #38
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 212 - 308
Target Start/End: Complemental strand, 12618805 - 12618709
Alignment:
Q  212 cactctttaaggattcctaataaagaaattattctttaaaaaagtcaaaaactctaatttccaatgcattgatttcataaattttgacaaaaactta 308  Q
    ||||||||||| ||||| |||  |||||||||| ||| |||||||||||   | ||| || |||||||||||||  | ||||||| | |||||||||    
T  12618805 cactctttaagcattccaaatttagaaattatttttttaaaaagtcaaatgttataaatttcaatgcattgattatacaaattttcataaaaactta 12618709  T

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Target: chr4; HSP #39
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 211 - 243
Target Start/End: Original strand, 14964322 - 14964354
Alignment:
Q  211 gcactctttaaggattcctaataaagaaattat 243  Q
    |||||||||||| ||||||||||||||||||||    
T  14964322 gcactctttaagcattcctaataaagaaattat 14964354  T

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Target: chr4; HSP #40
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 236 - 296
Target Start/End: Complemental strand, 19597237 - 19597177
Alignment:
Q  236 gaaattattctttaaaaaagtcaaaaactctaatttccaatgcattgatttcataaatttt 296  Q
    |||||||||||||||||| |||||| | |  |||||| |||||||||| | ||||||||||    
T  19597237 gaaattattctttaaaaatgtcaaatagttcaatttctaatgcattgaatacataaatttt 19597177  T

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Target: chr4; HSP #41
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 208 - 256
Target Start/End: Original strand, 50131051 - 50131099
Alignment:
Q  208 agggcactctttaaggattcctaataaagaaattattctttaaaaaagt 256  Q
    |||||| ||||||||| |||| ||| ||||||||||||||| |||||||    
T  50131051 agggcattctttaaggtttcccaattaagaaattattctttgaaaaagt 50131099  T

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Target: scaffold0018 (Bit Score: 68; Significance: 4e-30; HSPs: 2)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 211 - 310
Target Start/End: Original strand, 48773 - 48872
Alignment:
Q  211 gcactctttaaggattcctaataaagaaattattctttaaaaaagtcaaaaactctaatttccaatgcattgatttcataaattttgacaaaaacttact 310  Q
    ||||||||||| |||| ||||||||||||||||||||||||||| |||||||||  ||||| |||||||||||||||||||| ||| |||||||||||||    
T  48773 gcactctttaatgatttctaataaagaaattattctttaaaaaaatcaaaaacttcaattttcaatgcattgatttcataaactttaacaaaaacttact 48872  T

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Target: scaffold0018; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 212 - 254
Target Start/End: Original strand, 67675 - 67717
Alignment:
Q  212 cactctttaaggattcctaataaagaaattattctttaaaaaa 254  Q
    ||||||||||| ||| ||||| |||||||||||||||||||||    
T  67675 cactctttaagcatttctaatgaagaaattattctttaaaaaa 67717  T

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Target: scaffold0019 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 208 - 292
Target Start/End: Complemental strand, 67531 - 67447
Alignment:
Q  208 agggcactctttaaggattcctaataaagaaattattctttaaaaaagtcaaaaactctaatttccaatgcattgatttcataaa 292  Q
    |||||||| |||||  |||| ||||||||||||||||||||||||| || ||||||| |||||| ||||||||||||||||||||    
T  67531 agggcactatttaaaaattcttaataaagaaattattctttaaaaaggttaaaaactttaattttcaatgcattgatttcataaa 67447  T

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Target: scaffold0062 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 209 - 254
Target Start/End: Original strand, 2980 - 3025
Alignment:
Q  209 gggcactctttaaggattcctaataaagaaattattctttaaaaaa 254  Q
    |||||||||||||| ||| |||||||||||||||||||||||||||    
T  2980 gggcactctttaagcatttctaataaagaaattattctttaaaaaa 3025  T

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Target: scaffold0717 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0717
Description:

Target: scaffold0717; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 213 - 254
Target Start/End: Complemental strand, 5071 - 5030
Alignment:
Q  213 actctttaaggattcctaataaagaaattattctttaaaaaa 254  Q
    |||||||||| ||||||||| |||||||||||||||||||||    
T  5071 actctttaagcattcctaatgaagaaattattctttaaaaaa 5030  T

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Target: scaffold0036 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 216 - 276
Target Start/End: Original strand, 88236 - 88296
Alignment:
Q  216 ctttaaggattcctaataaagaaattattctttaaaaaagtcaaaaactctaatttccaat 276  Q
    ||||||| ||||||||| |||||||||||||| ||||||   ||||||| |||||||||||    
T  88236 ctttaagcattcctaatgaagaaattattcttaaaaaaaaataaaaactttaatttccaat 88296  T

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Target: scaffold0172 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0172
Description:

Target: scaffold0172; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 208 - 283
Target Start/End: Original strand, 13456 - 13531
Alignment:
Q  208 agggcactctttaaggattcctaataaagaaattattctttaaaaaagtcaaaaactctaatttccaatgcattga 283  Q
    |||||||||||||| |||||||||| |||||| ||||| || |||||||| || |||  ||||||| |||| ||||    
T  13456 agggcactctttaaagattcctaattaagaaactattcattgaaaaagtctaatacttcaatttccgatgctttga 13531  T

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Target: scaffold0027 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0027
Description:

Target: scaffold0027; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 208 - 281
Target Start/End: Complemental strand, 122580 - 122507
Alignment:
Q  208 agggcactctttaaggattcctaataaagaaattattctttaaaaaagtcaaaaactctaatttccaatgcatt 281  Q
    |||||||||||||||  |||  ||| ||||||||||||||| |||||||  || ||| |||||||| |||||||    
T  122580 agggcactctttaagatttctcaattaagaaattattctttgaaaaagtttaacactttaatttccgatgcatt 122507  T

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Target: scaffold0262 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0262
Description:

Target: scaffold0262; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 213 - 277
Target Start/End: Original strand, 17536 - 17600
Alignment:
Q  213 actctttaaggattcctaataaagaaattattctttaaaaaagtcaaaaactctaatttccaatg 277  Q
    |||||||||| |||  ||||||| ||||||||||||||| || | ||||||| |||||| |||||    
T  17536 actctttaagcatttttaataaataaattattctttaaataaattaaaaactttaattttcaatg 17600  T

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