View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5365_low_1 (Length: 379)
Name: NF5365_low_1
Description: NF5365
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5365_low_1 |
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Alignment Details
Target: chr6 (Bit Score: 334; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 1 - 370
Target Start/End: Complemental strand, 10982951 - 10982583
Alignment:
| Q |
1 |
tatccgaatcacaatttcaacaccattttattcataaattttattttatgagacaacaaaacaacttatgataagggccaacaaaacccatatcatataa |
100 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10982951 |
tatccgaatcacaatttcaccaccattttattcataaattttattttatgagacaacaaaacaacttatgataagggccaacaaaacccatatcatataa |
10982852 |
T |
|
| Q |
101 |
aaaagttatattatgttacttctaattctgcttccacaacttagccaacttattcaaagcgacaagggaacttccaccttcttctcttgtctctttagca |
200 |
Q |
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||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
10982851 |
aaa-gttatattatgttacttctaattctgcttccacaactgagccaacttattcaaagcgacaagggaacttccaccttcttctcttgcctctttagca |
10982753 |
T |
|
| Q |
201 |
cttattttcatcttgaaaataatttgtctaatctctttccctttatcggagtccattaattccttaattcgatcccctaactcggttccactcacaaacc |
300 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
10982752 |
cttattttcatcttgaaaataatttgtctaatctctttccccttatcggagtccattaattccttaatttgatcccctaactcggttccactcacaaacc |
10982653 |
T |
|
| Q |
301 |
cgtcttttgaatccttcagttccaaagcaaccttcatctcctcaaccaaaatcaccttgttcaacctttg |
370 |
Q |
| |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
10982652 |
cgtcttttgaatccttcaattccaaagcaaccttcatctcctcaaccaaaatcaccttgttcagcctttg |
10982583 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 126 - 370
Target Start/End: Complemental strand, 10968877 - 10968633
Alignment:
| Q |
126 |
ttctgcttccacaacttagccaacttattcaaagcgacaagggaacttccaccttcttctcttgtctctttagcacttattttcatcttgaaaataattt |
225 |
Q |
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|||||||||||||||| |||| ||||||||||| ||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
10968877 |
ttctgcttccacaactgtgccagattattcaaagcaacaagtgaacttccaccttcttctcttgcctctttagcacttattttcatcttgaaaataattt |
10968778 |
T |
|
| Q |
226 |
gtctaatctctttccctttatcggagtccattaattccttaattcgatcccctaactcggttccactcacaaacccgtcttttgaatccttcagttccaa |
325 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10968777 |
tcctaatctctttccctttatcggagtccattaattccttaattcgatcccctaactcggttccactcacaaacccgtcttttgaatccttcagttccaa |
10968678 |
T |
|
| Q |
326 |
agcaaccttcatctcctcaaccaaaatcaccttgttcaacctttg |
370 |
Q |
| |
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||||||||||||||| |||||||||||||||||||||| |||||| |
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| T |
10968677 |
agcaaccttcatctcgtcaaccaaaatcaccttgttcagcctttg |
10968633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 173 - 370
Target Start/End: Complemental strand, 11003010 - 11002813
Alignment:
| Q |
173 |
tccaccttcttctcttgtctctttagcacttattttcatcttgaaaataatttgtctaatctctttccctttatcggagtccattaattccttaattcga |
272 |
Q |
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||||||| || || ||| ||| ||||||||| |||||||||| ||||| | | |||||||||||||||||| || || ||||| || ||||||| || |
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| T |
11003010 |
tccacctcctccttttgcctccttagcacttgttttcatcttcaaaattgtctctctaatctctttccctttttctgattccatcaactccttaactctc |
11002911 |
T |
|
| Q |
273 |
tcccctaactcggttccactcacaaacccgtcttttgaatccttcagttccaaagcaaccttcatctcctcaaccaaaatcaccttgttcaacctttg |
370 |
Q |
| |
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||||| ||||| |||||||||||||||| | |||||| | || ||||||||||| |||||||| |||||||||||||||| |||||||||||||| |
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| T |
11002910 |
tcccccaactcatttccactcacaaaccctttttttgacccatttagttccaaagccaccttcatttcctcaaccaaaatcattttgttcaacctttg |
11002813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 147 - 328
Target Start/End: Complemental strand, 11080177 - 11079996
Alignment:
| Q |
147 |
aacttattcaaagcgacaagggaacttccaccttcttctcttgtctctttagcacttattttcatcttgaaaataatttgtctaatctctttccctttat |
246 |
Q |
| |
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||||| |||||| | ||||| ||| ||||||| || |||||| || |||||||||||||||||||| ||||| | | ||||| ||||||||| || | |
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| T |
11080177 |
aactttttcaaatcaacaagagaagatccacctcctcctcttgcttccttagcacttattttcatcttcaaaattgtctctctaacctctttcccctttt |
11080078 |
T |
|
| Q |
247 |
cggagtccattaattccttaattcgatcccctaactcggttccactcacaaacccgtcttttgaatccttcagttccaaagc |
328 |
Q |
| |
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| || ||||| || ||||||| || ||||| ||||| || ||||||||||||| |||||||| || |||| ||||||||| |
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| T |
11080077 |
ctgattccatcaactccttaactctctcccccaactcattttcactcacaaacccatcttttgactcattcaattccaaagc |
11079996 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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