View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5366-Insertion-1 (Length: 95)
Name: NF5366-Insertion-1
Description: NF5366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5366-Insertion-1 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 86; Significance: 1e-41; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 86; E-Value: 1e-41
Query Start/End: Original strand, 6 - 95
Target Start/End: Complemental strand, 48277355 - 48277266
Alignment:
| Q |
6 |
cacttatttttctaagaaacgttttccacttaggaccagcaattacttctgaagtctccttcatcttcttcaacttgtccatcatccatg |
95 |
Q |
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| T |
48277355 |
cacttatttttctaagaaacgttttccacttaggaccagcaatcacttctgaagtctccttcatcttcttcaacttgtccatcatccatg |
48277266 |
T |
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Target: chr2 (Bit Score: 30; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000003
Query Start/End: Original strand, 29 - 82
Target Start/End: Complemental strand, 25246830 - 25246777
Alignment:
| Q |
29 |
ttccacttaggaccagcaattacttctgaagtctccttcatcttcttcaacttg |
82 |
Q |
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| T |
25246830 |
ttccacttaggacctgcaatcacttctgaaacctctttcatcttcctcaacttg |
25246777 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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