View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5366-Insertion-2 (Length: 1052)
Name: NF5366-Insertion-2
Description: NF5366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5366-Insertion-2 |
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Alignment Details
Target: chr4 (Bit Score: 819; Significance: 0; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 819; E-Value: 0
Query Start/End: Original strand, 6 - 947
Target Start/End: Complemental strand, 37783532 - 37782582
Alignment:
| Q |
6 |
catatatgccacatacaatcaacactgctccaaagacactgtatacaacgaaattatatcaaatcaattttcatgcatatcaaggttaaaaaagataaca |
105 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37783532 |
catatatgccacatacaatcaacactgctccaaagacactgtatacaaccaaattatatcaaatcaattttcatgcatatcaaggttaaaaaagataaca |
37783433 |
T |
|
| Q |
106 |
tatgaataatatatgtttaaggtagaagtatgattttatcatgtaccttcctaaatataatttctcatccaacaatatataggcagagatagcaacaagt |
205 |
Q |
| |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37783432 |
tatgaataatatatgtttaaggtataagtatgattttatcatgtaccttcctaaatataatttctcatccaacaatatataggcagagatagcaacaagt |
37783333 |
T |
|
| Q |
206 |
aagagctgaagaggattgaaagcagatgtaaatataggacctctcatctttatgcaccaagaaataacaacaatcactaatccagaggctacaattccct |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37783332 |
aagagctgaagaggattgaaagcagatgtaaatataggacctctcatctttatgcaccaagaaataacaacaatcactaatccagaggctacaattccct |
37783233 |
T |
|
| Q |
306 |
gcagtaacattcacttgcatttaacaactacattcgaacctttaatttaacacatatat-----atatgaagggagtaaaattcttgtaaattccactaa |
400 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
37783232 |
gcaataacattcacttgcatttaacaactacattcgaacctttaatataacacatatatgatatatatgaagggagtaaaattcttgtaaattccactaa |
37783133 |
T |
|
| Q |
401 |
atttacttgtgtcccagtctaaagtagannnnnnnn-gtctctatgttgtaaataattagaaaatgcattgtccaatatatatttctcaaatttttgttc |
499 |
Q |
| |
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|||||| ||||||||||||||||||||| |||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
37783132 |
atttacgtgtgtcccagtctaaagtagatttttttttgtctctatgttgtaaaaaattagaaaaagcattgtccaatatatatttctcaaatttttgttc |
37783033 |
T |
|
| Q |
500 |
atatttgaatctacctatctcaaataaaaaacttgaagtggtttgattgattgagtttctacgagcataccgaataagcaatagtaagaagtctgatatc |
599 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
37783032 |
atatttgaatctacctatctcaaataaaaaacttgaattggtttgattgattgagtttctacgagcataccgaataagcaatagtaagaagtctgatatc |
37782933 |
T |
|
| Q |
600 |
gtaaccgagcttccattgattccaatctctatcgatacaaagagcaaaaacaatggcttgaatcgctgccattgtgcacaccaatgctgagcatgaattg |
699 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37782932 |
gtaaccgagcttccattgattccaatctctatcgatacaaagagcaaaaacaatggcttgaatcgctgccattgtgcacaccaatgctgagcatgaattg |
37782833 |
T |
|
| Q |
700 |
tgttctggaaattcttcattcaatttagcctgagtcatgtaaagttaatggaccataacatgcaaaacaactcatatatcatatattcatataaacacaa |
799 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
37782832 |
tgttctggaaattcttcattcaacttagcctgagtcatataaacttaatggaccataacatgcaaaacaactcatatatcatatattcatataaacacaa |
37782733 |
T |
|
| Q |
800 |
tgatatgtaaaaggcaaagttgcattagagatccctcaactaatttaggatataaaaggtttctttatct-tttatttaattaaaatcatcatttatctt |
898 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||| |||||||||||||||||||||||| |
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| T |
37782732 |
tgatatgtaaaaggcaatgttgcattagagatccctcaactaatttaggatataaaaagtttctttatctctttaattaattaaaatcatcatttatctt |
37782633 |
T |
|
| Q |
899 |
tctaaacgac-acaatattggtcatgcagtga-tatctatcaaaaatcgtg |
947 |
Q |
| |
|
|||||||||| ||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
37782632 |
tctaaacgacaacaatattggtcatgcagtgattatctatcaaaaatcgtg |
37782582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 85; E-Value: 6e-40
Query Start/End: Original strand, 559 - 731
Target Start/End: Complemental strand, 37808350 - 37808178
Alignment:
| Q |
559 |
tacgagcataccgaataagcaatagtaagaagtctgatatcgtaaccgagcttccattgattccaatctctatcgatacaaagagcaaaaacaatggctt |
658 |
Q |
| |
|
|||||||||||||||||||| ||||| ||||| |||||||||||||| |||||||||| ||||||| ||||||| ||||||||||| ||||||||||| |
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|
| T |
37808350 |
tacgagcataccgaataagccatagtgagaagcctgatatcgtaacccagcttccattcggtccaatccctatcgacacaaagagcaacaacaatggctt |
37808251 |
T |
|
| Q |
659 |
gaatcgctgccattgtgcacaccaatgctgagcatgaattgtgttctggaaattcttcattcaatttagcctg |
731 |
Q |
| |
|
||| ||| |||||| ||||| ||||||||||||||||| || |||| ||||||||||||| |||||||| |
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|
| T |
37808250 |
gaactgctcccattgagcacatcaatgctgagcatgaatgatggaatggatattcttcattcaacttagcctg |
37808178 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 78; E-Value: 9e-36
Query Start/End: Original strand, 149 - 334
Target Start/End: Complemental strand, 37808633 - 37808448
Alignment:
| Q |
149 |
taccttcctaaatataatttctcatccaacaatatataggcagagatagcaacaagtaagagctgaagaggattgaaagcagatgtaaatataggacctc |
248 |
Q |
| |
|
|||||||| |||||||| ||||||||||| || | ||||||| ||| ||| |||||||| |||||||||||||||||| |||| ||||| |||||| | |
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|
| T |
37808633 |
taccttccaaaatataacttctcatccaagaacaaataggcaaagacagctacaagtaaaagctgaagaggattgaaaacagacacaaatagaggacccc |
37808534 |
T |
|
| Q |
249 |
tcatctttatgcaccaagaaataacaacaatcactaatccagaggctacaattccctgcagtaacattcacttgcatttaacaact |
334 |
Q |
| |
|
||||| |||| |||||||||||||||| || |||| | |||||| | ||||| ||||||| |||||||||| | |||||||||||| |
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|
| T |
37808533 |
tcatccttatacaccaagaaataacaataaccactgacccagagaccacaataccctgcattaacattcacatacatttaacaact |
37808448 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 59; E-Value: 2e-24
Query Start/End: Original strand, 149 - 275
Target Start/End: Complemental strand, 37803924 - 37803798
Alignment:
| Q |
149 |
taccttcctaaatataatttctcatccaacaatatataggcagagatagcaacaagtaagagctgaagaggattgaaagcagatgtaaatataggacctc |
248 |
Q |
| |
|
|||||||||| |||||| |||||||||||||| | ||| ||||||| ||| |||||||| || |||||||||| |||| |||| | ||| | ||| |||| |
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|
| T |
37803924 |
taccttcctagatataacttctcatccaacaacagataagcagagacagccacaagtaaaagttgaagaggatagaaaacagaggcaaagagagggcctc |
37803825 |
T |
|
| Q |
249 |
tcatctttatgcaccaagaaataacaa |
275 |
Q |
| |
|
|||||||||||||||||| |||||||| |
|
|
| T |
37803824 |
tcatctttatgcaccaagcaataacaa |
37803798 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 49; E-Value: 2e-18
Query Start/End: Original strand, 149 - 305
Target Start/End: Complemental strand, 37792554 - 37792398
Alignment:
| Q |
149 |
taccttcctaaatataatttctcatccaacaatatataggcagagatagcaacaagtaagagctgaagaggattgaaagcagatgtaaatataggacctc |
248 |
Q |
| |
|
|||||||||||||||||||||||||| | ||||| || |||| || | ||||||| ||| |||||||||| |||| |||| | ||| | ||| |||| |
|
|
| T |
37792554 |
taccttcctaaatataatttctcatctatcaatagattagcagcgacaaacacaagtaggagttgaagaggatagaaaacagaggcaaaaagagggcctc |
37792455 |
T |
|
| Q |
249 |
tcatctttatgcaccaagaaataacaacaatcactaatccagaggctacaattccct |
305 |
Q |
| |
|
|||||||||||||||| | |||||||| | | || |||||||||||||||||||| |
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|
| T |
37792454 |
tcatctttatgcaccaggcaataacaatagtagttattccagaggctacaattccct |
37792398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 562 - 674
Target Start/End: Complemental strand, 37792320 - 37792208
Alignment:
| Q |
562 |
gagcataccgaataagcaatagtaagaagtctgatatcgtaaccgagcttccattgattccaatctctatcgatacaaagagcaaaaacaatggcttgaa |
661 |
Q |
| |
|
||||||||||||||||| | | ||||||||||||| |||||| ||||||||||| || ||||||| || | ||||| ||||||||| |||||||||| |
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|
| T |
37792320 |
gagcataccgaataagctaccatgagaagtctgatattgtaaccaagcttccattgggtcaaatctctgtccacacaaatagcaaaaacgatggcttgaa |
37792221 |
T |
|
| Q |
662 |
tcgctgccattgt |
674 |
Q |
| |
|
| ||| ||||||| |
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|
| T |
37792220 |
ttgctcccattgt |
37792208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 562 - 674
Target Start/End: Complemental strand, 37802012 - 37801900
Alignment:
| Q |
562 |
gagcataccgaataagcaatagtaagaagtctgatatcgtaaccgagcttccattgattccaatctctatcgatacaaagagcaaaaacaatggcttgaa |
661 |
Q |
| |
|
||||||||||||||||| | | ||||||||||||| |||||| ||||||||||| || ||||||| || | ||||| ||||||||| |||||||||| |
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|
| T |
37802012 |
gagcataccgaataagctaccatgagaagtctgatattgtaaccaagcttccattgggtcaaatctctgtccacacaaatagcaaaaacgatggcttgaa |
37801913 |
T |
|
| Q |
662 |
tcgctgccattgt |
674 |
Q |
| |
|
| ||| ||||||| |
|
|
| T |
37801912 |
ttgctcccattgt |
37801900 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 6 - 72
Target Start/End: Complemental strand, 37808775 - 37808709
Alignment:
| Q |
6 |
catatatgccacatacaatcaacactgctccaaagacactgtatacaacgaaattatatcaaatcaa |
72 |
Q |
| |
|
|||||| |||||| |||||||| ||||||||||| ||||| |||||||| ||| ||||||||||||| |
|
|
| T |
37808775 |
catataggccacacacaatcaatactgctccaaaaacactatatacaaccaaactatatcaaatcaa |
37808709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 215 - 299
Target Start/End: Original strand, 1213982 - 1214066
Alignment:
| Q |
215 |
agaggattgaaagcagatgtaaatataggacctctcatctttatgcaccaagaaataacaacaatcactaatccagaggctacaa |
299 |
Q |
| |
|
||||| ||||| |||||| ||||| ||| || ||||||||||||||||| ||| | |||| || ||||||||||||||| |||| |
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|
| T |
1213982 |
agagggttgaagacagatgcaaataaaggtcccctcatctttatgcaccacgaagtcacaataaccactaatccagaggcaacaa |
1214066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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