View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5366-Insertion-3 (Length: 556)
Name: NF5366-Insertion-3
Description: NF5366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5366-Insertion-3 |
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Alignment Details
Target: chr5 (Bit Score: 536; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 536; E-Value: 0
Query Start/End: Original strand, 7 - 554
Target Start/End: Complemental strand, 43572273 - 43571726
Alignment:
| Q |
7 |
attattatcacttattgtaatcctcaccccatttctttctacaatcaccaccatagactagaatgcttacctgctatacatctgtctatccatctaagtg |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
43572273 |
attattatcacttattgtaatcctcaccccatttctttctacaatcaccaccatagaccagaatgcttacctgctatacatctgtctatccatctaagtg |
43572174 |
T |
|
| Q |
107 |
ttcggtacatagcttcctcaactcttggaccagtaacggtggtctttataacatcgtcgagagccattatgatatctgctccaattctattctgcacaat |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
43572173 |
ttcggtacatagcttcctcaactcttggaccagtaacggtggtctttataacatcgtcgagagccattatgatatctgctccaattctattctgcagaat |
43572074 |
T |
|
| Q |
207 |
atatgacaaaaaatgaaaacaagtgaattagaggagcacagcacactacaaatgtgtgtgtaagtaatggacttacttgtatttgaattgagtcctcggg |
306 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43572073 |
atatgacaaaaaatgaaaacaagtgaattagaggagcacagcacactacaaatgtgtgtgtaagtaatggacttacttgtatttgaattgagtcctcggg |
43571974 |
T |
|
| Q |
307 |
tgttagaagcatcggctttccatctacaggtgactgaaacgtgacacctttttctgtgatatccgcaagatgcaaaagtgaaaccatttgaaagccacca |
406 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43571973 |
tgttagaagcatcggctttccatctacaggtgactgaaatgtgacacctttttctgtgatatccgcaagatgcaaaagtgaaaccatttgaaagccacca |
43571874 |
T |
|
| Q |
407 |
gagtcggtaagcatggcgcgtggccaattcataaatttgtgaagaccaccaagttggtcaagaagctcagaagtaggtctcaaagccaaatgataagtat |
506 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43571873 |
gagtcggtaagcatggcgcgtggccaattcataaatttgtgaagaccaccaagttggtcaagaagctcagaagtaggtctcaaagccaaatgataagtat |
43571774 |
T |
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| Q |
507 |
ttccaagtattatttggcaaccaatgtcctcaagctggctagttgtca |
554 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43571773 |
ttccaagtattatttggcaaccaatgtcctcaagctggctagttgtca |
43571726 |
T |
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