View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5366-Insertion-4 (Length: 342)

Name: NF5366-Insertion-4
Description: NF5366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5366-Insertion-4
NF5366-Insertion-4
[»] chr2 (11 HSPs)
chr2 (8-342)||(6045679-6046005)
chr2 (265-314)||(34691817-34691866)
chr2 (265-314)||(34714229-34714278)
chr2 (221-265)||(35056907-35056951)
chr2 (226-265)||(44860359-44860398)
chr2 (226-265)||(34784963-34785002)
chr2 (216-265)||(28524465-28524514)
chr2 (216-265)||(36096346-36096395)
chr2 (221-265)||(18054779-18054823)
chr2 (265-341)||(23717997-23718073)
chr2 (265-341)||(24105669-24105745)
[»] chr6 (8 HSPs)
chr6 (226-265)||(10294146-10294185)
chr6 (221-265)||(16488566-16488610)
chr6 (265-332)||(30866156-30866223)
chr6 (226-265)||(9195735-9195774)
chr6 (226-265)||(18367875-18367914)
chr6 (279-309)||(13689518-13689548)
chr6 (228-265)||(34384958-34384995)
chr6 (229-265)||(28862161-28862197)
[»] chr5 (10 HSPs)
chr5 (221-265)||(21814300-21814344)
chr5 (216-265)||(6401537-6401586)
chr5 (227-265)||(37328826-37328864)
chr5 (216-265)||(18592112-18592161)
chr5 (265-309)||(3966506-3966550)
chr5 (229-265)||(3966542-3966578)
chr5 (221-265)||(11685978-11686021)
chr5 (221-265)||(21542069-21542113)
chr5 (265-309)||(32766955-32766999)
chr5 (221-261)||(36642738-36642778)
[»] chr1 (7 HSPs)
chr1 (221-265)||(34371752-34371796)
chr1 (226-265)||(44482269-44482308)
chr1 (216-265)||(25934655-25934704)
chr1 (277-332)||(9629924-9629979)
chr1 (226-265)||(25361925-25361964)
chr1 (265-330)||(6427332-6427397)
chr1 (265-309)||(17425105-17425149)
[»] scaffold0036 (1 HSPs)
scaffold0036 (226-265)||(9728-9767)
[»] chr8 (5 HSPs)
chr8 (226-265)||(15816110-15816149)
chr8 (226-265)||(11927067-11927106)
chr8 (226-268)||(22652012-22652054)
chr8 (265-306)||(12606841-12606882)
chr8 (221-265)||(26902151-26902195)
[»] chr4 (12 HSPs)
chr4 (229-267)||(44132628-44132666)
chr4 (227-260)||(5225595-5225628)
chr4 (265-306)||(35952629-35952670)
chr4 (229-309)||(1747215-1747297)
chr4 (216-265)||(5414143-5414192)
chr4 (216-265)||(46083962-46084011)
chr4 (227-267)||(847988-848028)
chr4 (265-309)||(3712521-3712565)
chr4 (230-266)||(4100002-4100038)
chr4 (276-332)||(20521872-20521928)
chr4 (221-265)||(22234866-22234910)
chr4 (221-265)||(30982854-30982898)
[»] scaffold0003 (1 HSPs)
scaffold0003 (221-265)||(241633-241677)
[»] chr7 (3 HSPs)
chr7 (229-265)||(6630896-6630932)
chr7 (235-267)||(19206087-19206119)
chr7 (221-265)||(26329358-26329402)
[»] chr3 (3 HSPs)
chr3 (230-265)||(8039820-8039855)
chr3 (229-267)||(28678340-28678378)
chr3 (216-265)||(11665983-11666032)
[»] scaffold0623 (1 HSPs)
scaffold0623 (216-265)||(5967-6016)
[»] scaffold0316 (1 HSPs)
scaffold0316 (229-258)||(16180-16209)


Alignment Details
Target: chr2 (Bit Score: 282; Significance: 1e-158; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 8 - 342
Target Start/End: Original strand, 6045679 - 6046005
Alignment:
Q  8 cgatgatcttctccgtcatatcgctgattcgtaagttccactttcttgtgcattttcatgatttaattcacattcgtataattcagttgtgtctagggtt 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6045679 cgatgatcttctccgtcatatcgctgattcgtaagttccactttcttgtgcattttcatgatttaattcacattcgtataattcagttgtgtctagggtt 6045778  T
Q  108 atgactagttcagtgattgaatctgttatgacagcaggagaatggtagtaggagtgtagttttgaaaaatgcttggaaattataattacgaagctcaaca 207  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6045779 atgactagttcagtgattgaatctgttatgacaacaggagaatggtagtaggagtgtagttttgaaaaatgcttggaaattataattacgaagctcaaca 6045878  T
Q  208 atgtcatttcagtcacgggtcgtgtccgacaccaacacgacaccgacacatataattatataattacgttgaattgtatgattttatcaaattattagcg 307  Q
    ||||||||||| |||||||||||||||||||||||||| ||||||||||        |||||| ||| ||||||||||||||||||||||||||||||||    
T  6045879 atgtcatttcaatcacgggtcgtgtccgacaccaacaccacaccgacac--------atataactactttgaattgtatgattttatcaaattattagcg 6045970  T
Q  308 gtatgggtttgtcggtgtccgtgtcctctccgtgc 342  Q
    ||||||| |||||||||||||||||||||||||||    
T  6045971 gtatgggcttgtcggtgtccgtgtcctctccgtgc 6046005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 265 - 314
Target Start/End: Original strand, 34691817 - 34691866
Alignment:
Q  265 atataattacgttgaattgtatgattttatcaaattattagcggtatggg 314  Q
    ||||||||||  |||||| |||||||||||||||||||||||||||||||    
T  34691817 atataattacactgaattatatgattttatcaaattattagcggtatggg 34691866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 265 - 314
Target Start/End: Original strand, 34714229 - 34714278
Alignment:
Q  265 atataattacgttgaattgtatgattttatcaaattattagcggtatggg 314  Q
    ||||||||||  |||||| |||||||||||||||||||||||||||||||    
T  34714229 atataattacactgaattatatgattttatcaaattattagcggtatggg 34714278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 221 - 265
Target Start/End: Complemental strand, 35056951 - 35056907
Alignment:
Q  221 cacgggtcgtgtccgacaccaacacgacaccgacacatataatta 265  Q
    |||| ||||||||||||||| ||||||||||||||||||||||||    
T  35056951 cacgtgtcgtgtccgacaccgacacgacaccgacacatataatta 35056907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 226 - 265
Target Start/End: Complemental strand, 44860398 - 44860359
Alignment:
Q  226 gtcgtgtccgacaccaacacgacaccgacacatataatta 265  Q
    ||||||||| ||||||||||||||||||||||||||||||    
T  44860398 gtcgtgtccaacaccaacacgacaccgacacatataatta 44860359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 226 - 265
Target Start/End: Original strand, 34784963 - 34785002
Alignment:
Q  226 gtcgtgtccgacaccaacacgacaccgacacatataatta 265  Q
    ||||||||||| ||| ||||||||||||||||||||||||    
T  34784963 gtcgtgtccgataccgacacgacaccgacacatataatta 34785002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 216 - 265
Target Start/End: Complemental strand, 28524514 - 28524465
Alignment:
Q  216 tcagtcacgggtcgtgtccgacaccaacacgacaccgacacatataatta 265  Q
    |||| |||| || ||||||||||||||||| ||| |||||||||||||||    
T  28524514 tcagacacgtgttgtgtccgacaccaacacaacaacgacacatataatta 28524465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 216 - 265
Target Start/End: Original strand, 36096346 - 36096395
Alignment:
Q  216 tcagtcacgggtcgtgtccgacaccaacacgacaccgacacatataatta 265  Q
    |||| |||| ||||||||||||| | |||||||||||||| |||||||||    
T  36096346 tcagacacgtgtcgtgtccgacatcgacacgacaccgacaaatataatta 36096395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 221 - 265
Target Start/End: Original strand, 18054779 - 18054823
Alignment:
Q  221 cacgggtcgtgtccgacaccaacacgacaccgacacatataatta 265  Q
    |||| ||||||| ||||||| |||||||||| |||||||||||||    
T  18054779 cacgcgtcgtgttcgacaccgacacgacaccaacacatataatta 18054823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 265 - 341
Target Start/End: Complemental strand, 23718073 - 23717997
Alignment:
Q  265 atataattacgttgaattgtatgattttatcaaattattagcggtatgggtttgtcggtgtccgtgtcctctccgtg 341  Q
    ||||||||||  |||||| | ||| ||| |||||||||||||||| | ||| |||| ||||||||||| | ||||||    
T  23718073 atataattacactgaattatgtgactttctcaaattattagcggtgtcggtgtgtcagtgtccgtgtcatgtccgtg 23717997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 265 - 341
Target Start/End: Complemental strand, 24105745 - 24105669
Alignment:
Q  265 atataattacgttgaattgtatgattttatcaaattattagcggtatgggtttgtcggtgtccgtgtcctctccgtg 341  Q
    ||||||||||  |||||| | ||| ||| |||||||||||||||| | ||| |||| ||||||||||| | ||||||    
T  24105745 atataattacactgaattatgtgactttctcaaattattagcggtgtcggtgtgtcagtgtccgtgtcatgtccgtg 24105669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 226 - 265
Target Start/End: Complemental strand, 10294185 - 10294146
Alignment:
Q  226 gtcgtgtccgacaccaacacgacaccgacacatataatta 265  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  10294185 gtcgtgtccgacaccaacacgacaccgacacatataatta 10294146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 221 - 265
Target Start/End: Original strand, 16488566 - 16488610
Alignment:
Q  221 cacgggtcgtgtccgacaccaacacgacaccgacacatataatta 265  Q
    |||| ||||||||||||||| ||||||||||||||||||||||||    
T  16488566 cacgtgtcgtgtccgacaccgacacgacaccgacacatataatta 16488610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 265 - 332
Target Start/End: Original strand, 30866156 - 30866223
Alignment:
Q  265 atataattacgttgaattgtatgattttatcaaattattagcggtatgggtttgtcggtgtccgtgtc 332  Q
    |||||||||| ||||||| | ||||||| |||||||||||||||| | ||| |||||||||| |||||    
T  30866156 atataattacattgaattatgtgattttctcaaattattagcggtgttggtgtgtcggtgtcagtgtc 30866223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 226 - 265
Target Start/End: Original strand, 9195735 - 9195774
Alignment:
Q  226 gtcgtgtccgacaccaacacgacaccgacacatataatta 265  Q
    |||||||| |||||| ||||||||||||||||||||||||    
T  9195735 gtcgtgtcagacacctacacgacaccgacacatataatta 9195774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 226 - 265
Target Start/End: Complemental strand, 18367914 - 18367875
Alignment:
Q  226 gtcgtgtccgacaccaacacgacaccgacacatataatta 265  Q
    |||||||| |||||| ||||||||||||||||||||||||    
T  18367914 gtcgtgtctgacaccgacacgacaccgacacatataatta 18367875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 279 - 309
Target Start/End: Original strand, 13689518 - 13689548
Alignment:
Q  279 aattgtatgattttatcaaattattagcggt 309  Q
    |||||||||||||||||||||||||||||||    
T  13689518 aattgtatgattttatcaaattattagcggt 13689548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 228 - 265
Target Start/End: Original strand, 34384958 - 34384995
Alignment:
Q  228 cgtgtccgacaccaacacgacaccgacacatataatta 265  Q
    |||||| ||||||||||||| |||||||||||||||||    
T  34384958 cgtgtctgacaccaacacgaaaccgacacatataatta 34384995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 229 - 265
Target Start/End: Complemental strand, 28862197 - 28862161
Alignment:
Q  229 gtgtccgacaccaacacgacaccgacacatataatta 265  Q
    ||||| |||||||||||||||||||||||||| ||||    
T  28862197 gtgtcagacaccaacacgacaccgacacatatgatta 28862161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000008; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 221 - 265
Target Start/End: Complemental strand, 21814344 - 21814300
Alignment:
Q  221 cacgggtcgtgtccgacaccaacacgacaccgacacatataatta 265  Q
    |||| ||||||||||||||| ||||||||||||||||||||||||    
T  21814344 cacgtgtcgtgtccgacaccgacacgacaccgacacatataatta 21814300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 216 - 265
Target Start/End: Complemental strand, 6401586 - 6401537
Alignment:
Q  216 tcagtcacgggtcgtgtccgacaccaacacgacaccgacacatataatta 265  Q
    |||| |||| ||||||||||||||  ||||||||||||||||||||||||    
T  6401586 tcagacacgtgtcgtgtccgacactgacacgacaccgacacatataatta 6401537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 227 - 265
Target Start/End: Original strand, 37328826 - 37328864
Alignment:
Q  227 tcgtgtccgacaccaacacgacaccgacacatataatta 265  Q
    |||||||||||||| ||||||||||||||||| ||||||    
T  37328826 tcgtgtccgacaccgacacgacaccgacacatgtaatta 37328864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 216 - 265
Target Start/End: Complemental strand, 18592161 - 18592112
Alignment:
Q  216 tcagtcacgggtcgtgtccgacaccaacacgacaccgacacatataatta 265  Q
    |||| |||| || |||||||||||| ||||||||||| ||||||||||||    
T  18592161 tcagacacgtgttgtgtccgacaccgacacgacaccggcacatataatta 18592112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 265 - 309
Target Start/End: Complemental strand, 3966550 - 3966506
Alignment:
Q  265 atataattacgttgaattgtatgattttatcaaattattagcggt 309  Q
    ||||||||||  |||||||| ||||||| ||||||||||||||||    
T  3966550 atataattacactgaattgtgtgattttctcaaattattagcggt 3966506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 229 - 265
Target Start/End: Complemental strand, 3966578 - 3966542
Alignment:
Q  229 gtgtccgacaccaacacgacaccgacacatataatta 265  Q
    |||||||||||  ||||||||||||||||||||||||    
T  3966578 gtgtccgacactgacacgacaccgacacatataatta 3966542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 221 - 265
Target Start/End: Complemental strand, 11686021 - 11685978
Alignment:
Q  221 cacgggtcgtgtccgacaccaacacgacaccgacacatataatta 265  Q
    |||| ||||||||||||||| | ||||||||||||||||||||||    
T  11686021 cacgtgtcgtgtccgacaccga-acgacaccgacacatataatta 11685978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 221 - 265
Target Start/End: Complemental strand, 21542113 - 21542069
Alignment:
Q  221 cacgggtcgtgtccgacaccaacacgacaccgacacatataatta 265  Q
    |||| ||||||||||||||| ||||||||||||||| | ||||||    
T  21542113 cacgtgtcgtgtccgacaccgacacgacaccgacacttgtaatta 21542069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 265 - 309
Target Start/End: Original strand, 32766955 - 32766999
Alignment:
Q  265 atataattacgttgaattgtatgattttatcaaattattagcggt 309  Q
    |||||||||| |||||||||  |||||| ||||||||||||||||    
T  32766955 atataattacattgaattgtgcgattttctcaaattattagcggt 32766999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 221 - 261
Target Start/End: Original strand, 36642738 - 36642778
Alignment:
Q  221 cacgggtcgtgtccgacaccaacacgacaccgacacatata 261  Q
    |||| ||||||||||||||||||| ||||||||||| ||||    
T  36642738 cacgtgtcgtgtccgacaccaacatgacaccgacacttata 36642778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000008; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 221 - 265
Target Start/End: Complemental strand, 34371796 - 34371752
Alignment:
Q  221 cacgggtcgtgtccgacaccaacacgacaccgacacatataatta 265  Q
    |||| ||||| ||||||||||||||||||||||||||||||||||    
T  34371796 cacgtgtcgtatccgacaccaacacgacaccgacacatataatta 34371752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 226 - 265
Target Start/End: Complemental strand, 44482308 - 44482269
Alignment:
Q  226 gtcgtgtccgacaccaacacgacaccgacacatataatta 265  Q
    ||||||||||||||| ||||||||||||||||||||||||    
T  44482308 gtcgtgtccgacaccgacacgacaccgacacatataatta 44482269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 216 - 265
Target Start/End: Complemental strand, 25934704 - 25934655
Alignment:
Q  216 tcagtcacgggtcgtgtccgacaccaacacgacaccgacacatataatta 265  Q
    |||| |||| ||||||||||||||| |||||| |||||||||||||||||    
T  25934704 tcagacacgtgtcgtgtccgacaccgacacgataccgacacatataatta 25934655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 277 - 332
Target Start/End: Original strand, 9629924 - 9629979
Alignment:
Q  277 tgaattgtatgattttatcaaattattagcggtatgggtttgtcggtgtccgtgtc 332  Q
    |||||| |||||||||||||||||||||||||| | | | ||||||||||| ||||    
T  9629924 tgaattatatgattttatcaaattattagcggtgtcgatgtgtcggtgtccatgtc 9629979  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 226 - 265
Target Start/End: Complemental strand, 25361964 - 25361925
Alignment:
Q  226 gtcgtgtccgacaccaacacgacaccgacacatataatta 265  Q
    ||||||||||||||| ||||||||| ||||||||||||||    
T  25361964 gtcgtgtccgacaccgacacgacactgacacatataatta 25361925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 265 - 330
Target Start/End: Complemental strand, 6427397 - 6427332
Alignment:
Q  265 atataattacgttgaattgtatgattttatcaaattattagcggtatgggtttgtcggtgtccgtg 330  Q
    |||||||||| ||||||| | ||||||| |||||||||||||||| | ||  |||| |||||||||    
T  6427397 atataattacattgaattatgtgattttctcaaattattagcggtgttggcgtgtcagtgtccgtg 6427332  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 265 - 309
Target Start/End: Original strand, 17425105 - 17425149
Alignment:
Q  265 atataattacgttgaattgtatgattttatcaaattattagcggt 309  Q
    |||||||||| ||||||| | ||||||||||||||||||| ||||    
T  17425105 atataattacattgaattatgtgattttatcaaattattatcggt 17425149  T

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Target: scaffold0036 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 226 - 265
Target Start/End: Original strand, 9728 - 9767
Alignment:
Q  226 gtcgtgtccgacaccaacacgacaccgacacatataatta 265  Q
    |||||||| |||||||||||||||||||||||||||||||    
T  9728 gtcgtgtctgacaccaacacgacaccgacacatataatta 9767  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 226 - 265
Target Start/End: Original strand, 15816110 - 15816149
Alignment:
Q  226 gtcgtgtccgacaccaacacgacaccgacacatataatta 265  Q
    ||||||||||||||||||||||||||||||| ||||||||    
T  15816110 gtcgtgtccgacaccaacacgacaccgacacttataatta 15816149  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 226 - 265
Target Start/End: Original strand, 11927067 - 11927106
Alignment:
Q  226 gtcgtgtccgacaccaacacgacaccgacacatataatta 265  Q
    |||||||  |||||||||||||||||||||||||||||||    
T  11927067 gtcgtgtatgacaccaacacgacaccgacacatataatta 11927106  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 226 - 268
Target Start/End: Complemental strand, 22652054 - 22652012
Alignment:
Q  226 gtcgtgtccgacaccaacacgacaccgacacatataattatat 268  Q
    ||||||||||||||| ||||||||||||||| | |||||||||    
T  22652054 gtcgtgtccgacaccgacacgacaccgacacttgtaattatat 22652012  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 265 - 306
Target Start/End: Original strand, 12606841 - 12606882
Alignment:
Q  265 atataattacgttgaattgtatgattttatcaaattattagc 306  Q
    |||||||||| ||||||| ||||||||| |||||||||||||    
T  12606841 atataattacattgaattatatgattttctcaaattattagc 12606882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 221 - 265
Target Start/End: Original strand, 26902151 - 26902195
Alignment:
Q  221 cacgggtcgtgtccgacaccaacacgacaccgacacatataatta 265  Q
    |||| ||||||||||||||  | ||||||||||||||||||||||    
T  26902151 cacgtgtcgtgtccgacactcatacgacaccgacacatataatta 26902195  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 229 - 267
Target Start/End: Original strand, 44132628 - 44132666
Alignment:
Q  229 gtgtccgacaccaacacgacaccgacacatataattata 267  Q
    |||| ||||||||||||||||||||||||||||||||||    
T  44132628 gtgttcgacaccaacacgacaccgacacatataattata 44132666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 227 - 260
Target Start/End: Original strand, 5225595 - 5225628
Alignment:
Q  227 tcgtgtccgacaccaacacgacaccgacacatat 260  Q
    ||||||||||||||||||||||||||||||||||    
T  5225595 tcgtgtccgacaccaacacgacaccgacacatat 5225628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 265 - 306
Target Start/End: Original strand, 35952629 - 35952670
Alignment:
Q  265 atataattacgttgaattgtatgattttatcaaattattagc 306  Q
    |||||||||| ||||||| |||||||||||||||||||||||    
T  35952629 atataattacattgaattatatgattttatcaaattattagc 35952670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 229 - 309
Target Start/End: Complemental strand, 1747297 - 1747215
Alignment:
Q  229 gtgtccgacaccaacacgacaccgacacatataatta--tataattacgttgaattgtatgattttatcaaattattagcggt 309  Q
    |||| ||||||||||||||||| |||||||||||| |  ||||||||   |||||| | ||||||| |||| |||||||||||    
T  1747297 gtgttcgacaccaacacgacactgacacatataataacgtataattaaactgaattatgtgattttctcaatttattagcggt 1747215  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 216 - 265
Target Start/End: Original strand, 5414143 - 5414192
Alignment:
Q  216 tcagtcacgggtcgtgtccgacaccaacacgacaccgacacatataatta 265  Q
    |||| |||| ||||||||||||||  |||||||||||| |||||||||||    
T  5414143 tcagacacgtgtcgtgtccgacactgacacgacaccgatacatataatta 5414192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 216 - 265
Target Start/End: Original strand, 46083962 - 46084011
Alignment:
Q  216 tcagtcacgggtcgtgtccgacaccaacacgacaccgacacatataatta 265  Q
    |||| |||| ||||||||||| ||  ||||||||||||||||||||||||    
T  46083962 tcagacacgtgtcgtgtccgatactgacacgacaccgacacatataatta 46084011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 227 - 267
Target Start/End: Complemental strand, 848028 - 847988
Alignment:
Q  227 tcgtgtccgacaccaacacgacaccgacacatataattata 267  Q
    |||||||||||||||||| ||||||||||| | ||||||||    
T  848028 tcgtgtccgacaccaacaagacaccgacacttgtaattata 847988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 265 - 309
Target Start/End: Original strand, 3712521 - 3712565
Alignment:
Q  265 atataattacgttgaattgtatgattttatcaaattattagcggt 309  Q
    |||||||||| |||||||  |||||||| ||||||||||||||||    
T  3712521 atataattacattgaattacatgattttctcaaattattagcggt 3712565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 230 - 266
Target Start/End: Complemental strand, 4100038 - 4100002
Alignment:
Q  230 tgtccgacaccaacacgacaccgacacatataattat 266  Q
    ||||||||||  |||||||||||||||||||||||||    
T  4100038 tgtccgacacagacacgacaccgacacatataattat 4100002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 276 - 332
Target Start/End: Original strand, 20521872 - 20521928
Alignment:
Q  276 ttgaattgtatgattttatcaaattattagcggtatgggtttgtcggtgtccgtgtc 332  Q
    ||||||| | ||||||||||||||||||| |||||| ||  |||| |||||||||||    
T  20521872 ttgaattatgtgattttatcaaattattatcggtatcggcgtgtcagtgtccgtgtc 20521928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 221 - 265
Target Start/End: Original strand, 22234866 - 22234910
Alignment:
Q  221 cacgggtcgtgtccgacaccaacacgacaccgacacatataatta 265  Q
    |||| |||||||| |||||| |||||||||||||||||| |||||    
T  22234866 cacgtgtcgtgtcagacaccgacacgacaccgacacatagaatta 22234910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 221 - 265
Target Start/End: Original strand, 30982854 - 30982898
Alignment:
Q  221 cacgggtcgtgtccgacaccaacacgacaccgacacatataatta 265  Q
    |||| |||||||| |||||| ||||||||||||||| ||||||||    
T  30982854 cacgtgtcgtgtctgacaccgacacgacaccgacacttataatta 30982898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 221 - 265
Target Start/End: Complemental strand, 241677 - 241633
Alignment:
Q  221 cacgggtcgtgtccgacaccaacacgacaccgacacatataatta 265  Q
    |||| |||||||||||||||||||||||||||||||  |||||||    
T  241677 cacgtgtcgtgtccgacaccaacacgacaccgacactcataatta 241633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 229 - 265
Target Start/End: Original strand, 6630896 - 6630932
Alignment:
Q  229 gtgtccgacaccaacacgacaccgacacatataatta 265  Q
    ||||||||||||||||||||| |||||||||||||||    
T  6630896 gtgtccgacaccaacacgacatcgacacatataatta 6630932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 235 - 267
Target Start/End: Complemental strand, 19206119 - 19206087
Alignment:
Q  235 gacaccaacacgacaccgacacatataattata 267  Q
    |||||||||| ||||||||||||||||||||||    
T  19206119 gacaccaacaagacaccgacacatataattata 19206087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 221 - 265
Target Start/End: Original strand, 26329358 - 26329402
Alignment:
Q  221 cacgggtcgtgtccgacaccaacacgacaccgacacatataatta 265  Q
    |||| |||||||| |||||| ||||||| ||||||||||||||||    
T  26329358 cacgtgtcgtgtctgacaccgacacgacgccgacacatataatta 26329402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000008; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 230 - 265
Target Start/End: Original strand, 8039820 - 8039855
Alignment:
Q  230 tgtccgacaccaacacgacaccgacacatataatta 265  Q
    ||||||||||| ||||||||||||||||||||||||    
T  8039820 tgtccgacaccgacacgacaccgacacatataatta 8039855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 229 - 267
Target Start/End: Complemental strand, 28678378 - 28678340
Alignment:
Q  229 gtgtccgacaccaacacgacaccgacacatataattata 267  Q
    ||||| ||||||||||||||||||||||||| |||||||    
T  28678378 gtgtctgacaccaacacgacaccgacacatacaattata 28678340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 216 - 265
Target Start/End: Complemental strand, 11666032 - 11665983
Alignment:
Q  216 tcagtcacgggtcgtgtccgacaccaacacgacaccgacacatataatta 265  Q
    |||| |||| ||||||||  ||| ||||||||||||||||||||||||||    
T  11666032 tcagacacgtgtcgtgtctaacatcaacacgacaccgacacatataatta 11665983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0623 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0623
Description:

Target: scaffold0623; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 216 - 265
Target Start/End: Original strand, 5967 - 6016
Alignment:
Q  216 tcagtcacgggtcgtgtccgacaccaacacgacaccgacacatataatta 265  Q
    |||| |||| ||||||| ||||||| | ||||||||||||||||||||||    
T  5967 tcagacacgtgtcgtgttcgacaccgatacgacaccgacacatataatta 6016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0316 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0316
Description:

Target: scaffold0316; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 229 - 258
Target Start/End: Complemental strand, 16209 - 16180
Alignment:
Q  229 gtgtccgacaccaacacgacaccgacacat 258  Q
    ||||||||||||||||||||||||||||||    
T  16209 gtgtccgacaccaacacgacaccgacacat 16180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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