View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5366_high_4 (Length: 271)

Name: NF5366_high_4
Description: NF5366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF5366_high_4
NF5366_high_4
[»] chr4 (3 HSPs)
chr4 (65-191)||(48277769-48277895)
chr4 (192-271)||(48277663-48277742)
chr4 (13-73)||(48278230-48278290)


Alignment Details
Target: chr4 (Bit Score: 123; Significance: 3e-63; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 65 - 191
Target Start/End: Complemental strand, 48277895 - 48277769
Alignment:
Q  65 ttttcttttctttggaaatttgattgaaggtgaaggatgattgatggattataaatcaaagatatttatttatacctttattgcaagaagacaacttgaa 164  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48277895 ttttcttttctttggaaatttgattgaaggtgaaggatgattgatggattataaatcaaagatatttatttatacctttattgcaagaagacaacttgaa 48277796  T
Q  165 ttgccatctaacacgataaggaattac 191  Q
    ||||| |||||||||||||||||||||    
T  48277795 ttgccctctaacacgataaggaattac 48277769  T

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Target: chr4; HSP #2
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 192 - 271
Target Start/End: Complemental strand, 48277742 - 48277663
Alignment:
Q  192 aggtaacgaataaacgactttgaacgcgtcgtcaataccacttgcatacttttcgaatacatccatacctttttgctatc 271  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  48277742 aggtaacgaataaacgactttgtacgcgtcgtcaataccacttgcatacttttcgaatacatccataactttttgctatc 48277663  T

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Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 13 - 73
Target Start/End: Complemental strand, 48278290 - 48278230
Alignment:
Q  13 ttctatctatataatttgaaaagaaaatctcaannnnnnnaattagttgtagttttctttt 73  Q
    |||||||||||||||||||||||||||||||||       |||||||||||||||||||||    
T  48278290 ttctatctatataatttgaaaagaaaatctcaatttttttaattagttgtagttttctttt 48278230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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