View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5366_high_5 (Length: 239)
Name: NF5366_high_5
Description: NF5366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5366_high_5 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 17 - 239
Target Start/End: Original strand, 48277348 - 48277570
Alignment:
| Q |
17 |
aataagtgggtatgggaaaaaacaacaaaagcataggtttcaatatgatgcacatagttatgctcttaatttcaatagtggggctcaaagtgaagatgaa |
116 |
Q |
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| T |
48277348 |
aataagtgggtatgggaaaaaacaacaaaagcataggtttcaatatgatgcacatagttatgctcttaattttaatagtggggctcaaagtgaagatgaa |
48277447 |
T |
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| Q |
117 |
gaatatttgcctccaagtttttctaccaggttttctaatccttatccagatgcacgtcgccagaatgaaacatgatatatatgtaatgttcttgtattta |
216 |
Q |
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| T |
48277448 |
gaatatttgcctccaagtttttctaccaggttttctaatccttatccagatgcacgtcgccagaatgaaacatgatatatatgtaatgttcttgtattta |
48277547 |
T |
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| Q |
217 |
caaagattttaatttaatcgatt |
239 |
Q |
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| T |
48277548 |
caaagattttaatttaattgatt |
48277570 |
T |
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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 57 - 115
Target Start/End: Original strand, 25246886 - 25246944
Alignment:
| Q |
57 |
caatatgatgcacatagttatgctcttaatttcaatagtggggctcaaagtgaagatga |
115 |
Q |
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| T |
25246886 |
caatatgatgaacacagctatgctctcaacttcagtagtggggctcagagtgaagatga |
25246944 |
T |
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