View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF5366_low_1 (Length: 437)
Name: NF5366_low_1
Description: NF5366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5366_low_1 |
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Alignment Details
Target: chr1 (Bit Score: 233; Significance: 1e-128; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 1 - 257
Target Start/End: Original strand, 17439415 - 17439671
Alignment:
| Q |
1 |
ctgttaaatgcttgcaagggaagctgaaaattgctgatttggatttgattatttctgattgtattcattttctgtctttaattccgaatgttagtgttgc |
100 |
Q |
| |
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||||||| || ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||| |||||||||||||| |
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| T |
17439415 |
ctgttaagtgtttgcaagggaagctgaaaattgctgatttggatttgattatctctgattgtattcatcttctgtctttaattcctaatgttagtgttgc |
17439514 |
T |
|
| Q |
101 |
ttttgttagtagaaccaaaaacaaggctgcccatggcttggttaaagttgctattagtttaggttctaaatcttgggtgggttgtgcccctgatcaaatt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17439515 |
ttttgttagtagaaccaaaaacaaggctgcccatggcttggttaaagttgctgttagtttaggttctaaatcttgggtgggttgtgcccctgatcaaatt |
17439614 |
T |
|
| Q |
201 |
gtagcaactgtttgtatggactctctttattctagttgaatgaaatatcttccagtc |
257 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
17439615 |
gtagcaactgtttgtatggactctctttattctagttgaatgaaatatcttccagtc |
17439671 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 146; Significance: 9e-77; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 146; E-Value: 9e-77
Query Start/End: Original strand, 280 - 425
Target Start/End: Complemental strand, 34616177 - 34616032
Alignment:
| Q |
280 |
aaggagttttactcatcaaaattaatcttagtttgtatttcacgaatggatagaagatagtaacagtagcatttccatggagcttaaacttcaagcatca |
379 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34616177 |
aaggagttttactcatcaaaattaatcttagtttgtatttcacgaatggatagaagatagtaacagtagcatttccatggagcttaaacttcaagcatca |
34616078 |
T |
|
| Q |
380 |
atggcttcatcttcatcttcttccactcctttctgcacctatgcta |
425 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34616077 |
atggcttcatcttcatcttcttccactcctttctgcacctatgcta |
34616032 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 146; E-Value: 9e-77
Query Start/End: Original strand, 280 - 425
Target Start/End: Complemental strand, 34743614 - 34743469
Alignment:
| Q |
280 |
aaggagttttactcatcaaaattaatcttagtttgtatttcacgaatggatagaagatagtaacagtagcatttccatggagcttaaacttcaagcatca |
379 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34743614 |
aaggagttttactcatcaaaattaatcttagtttgtatttcacgaatggatagaagatagtaacagtagcatttccatggagcttaaacttcaagcatca |
34743515 |
T |
|
| Q |
380 |
atggcttcatcttcatcttcttccactcctttctgcacctatgcta |
425 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34743514 |
atggcttcatcttcatcttcttccactcctttctgcacctatgcta |
34743469 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 346 - 425
Target Start/End: Complemental strand, 11544943 - 11544864
Alignment:
| Q |
346 |
tagcatttccatggagcttaaacttcaagcatcaatggcttcatcttcatcttcttccactcctttctgcacctatgcta |
425 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
11544943 |
tagcatttccatgtagcttaaacttcaagcatcaatggcttcatcttcatcttcttccactcctttctgcacctatgcta |
11544864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 350 - 425
Target Start/End: Complemental strand, 34758655 - 34758580
Alignment:
| Q |
350 |
atttccatggagcttaaacttcaagcatcaatggcttcatcttcatcttcttccactcctttctgcacctatgcta |
425 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34758655 |
atttccatggagcttaaacttcaagcatcaatggcttcatcttcatcttcttccactcctttctgcacctatgcta |
34758580 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 139; Significance: 1e-72; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 2 - 224
Target Start/End: Complemental strand, 30019517 - 30019295
Alignment:
| Q |
2 |
tgttaaatgcttgcaagggaagctgaaaattgctgatttggatttgattatttctgattgtattcattttctgtctttaattccgaatgttagtgttgct |
101 |
Q |
| |
|
||||||||||||||||| |||||||||| |||| ||||| | |||||||| |||||||||||||||||||| || ||| |||| ||||||||||||||| |
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|
| T |
30019517 |
tgttaaatgcttgcaagcgaagctgaaatttgcagatttatacttgattatatctgattgtattcattttctttccttacttcctaatgttagtgttgct |
30019418 |
T |
|
| Q |
102 |
tttgttagtagaaccaaaaacaaggctgcccatggcttggttaaagttgctattagtttaggttctaaatcttgggtgggttgtgcccctgatcaaattg |
201 |
Q |
| |
|
|||||| |||||||||| ||||| |||||||||||||| |||||||||| | ||||||| ||||||||||| ||||||| |||||||||||||||||||| |
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|
| T |
30019417 |
tttgttggtagaaccaagaacaaagctgcccatggcttagttaaagttgttgttagtttgggttctaaatcatgggtggattgtgcccctgatcaaattg |
30019318 |
T |
|
| Q |
202 |
tagcaactgtttgtatggactct |
224 |
Q |
| |
|
|||||||||||||||||||||| |
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| T |
30019317 |
cagcaactgtttgtatggactct |
30019295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 2 - 224
Target Start/End: Original strand, 30041178 - 30041400
Alignment:
| Q |
2 |
tgttaaatgcttgcaagggaagctgaaaattgctgatttggatttgattatttctgattgtattcattttctgtctttaattccgaatgttagtgttgct |
101 |
Q |
| |
|
||||||||||||||||| |||||||||| |||| ||||| | |||||||| |||||||||||||||||||| || ||| |||| ||||||||||||||| |
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|
| T |
30041178 |
tgttaaatgcttgcaagcgaagctgaaatttgcagatttatacttgattatatctgattgtattcattttctttccttacttcctaatgttagtgttgct |
30041277 |
T |
|
| Q |
102 |
tttgttagtagaaccaaaaacaaggctgcccatggcttggttaaagttgctattagtttaggttctaaatcttgggtgggttgtgcccctgatcaaattg |
201 |
Q |
| |
|
|||||| |||||||||| ||||| |||||||||||||| |||||||||| | ||||||| ||||||||||| ||||||| |||||||||||||||||||| |
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|
| T |
30041278 |
tttgttggtagaaccaagaacaaagctgcccatggcttagttaaagttgttgttagtttgggttctaaatcatgggtggattgtgcccctgatcaaattg |
30041377 |
T |
|
| Q |
202 |
tagcaactgtttgtatggactct |
224 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
30041378 |
cagcaactgtttgtatggactct |
30041400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 2 - 224
Target Start/End: Original strand, 30235316 - 30235538
Alignment:
| Q |
2 |
tgttaaatgcttgcaagggaagctgaaaattgctgatttggatttgattatttctgattgtattcattttctgtctttaattccgaatgttagtgttgct |
101 |
Q |
| |
|
||||||||||||||||| |||||||||| |||| ||||| | |||||||| |||||||||||||||||||| || ||| |||| ||||||||||||||| |
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|
| T |
30235316 |
tgttaaatgcttgcaagcgaagctgaaatttgcagatttatacttgattatatctgattgtattcattttctttccttacttcctaatgttagtgttgct |
30235415 |
T |
|
| Q |
102 |
tttgttagtagaaccaaaaacaaggctgcccatggcttggttaaagttgctattagtttaggttctaaatcttgggtgggttgtgcccctgatcaaattg |
201 |
Q |
| |
|
|||||| |||||||||| ||||| |||||||||||||| |||||||||| | ||||||| ||||||||||| ||||||| |||||||||||||||||||| |
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|
| T |
30235416 |
tttgttggtagaaccaagaacaaagctgcccatggcttagttaaagttgttgttagtttgggttctaaatcatgggtggattgtgcccctgatcaaattg |
30235515 |
T |
|
| Q |
202 |
tagcaactgtttgtatggactct |
224 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
30235516 |
cagcaactgtttgtatggactct |
30235538 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 2 - 183
Target Start/End: Original strand, 30121942 - 30122125
Alignment:
| Q |
2 |
tgttaaatgcttgcaagggaagctgaaaattgctgatttggatttgattatttctgattgtattcattttctgtctttaattccgaatgttagtgttgct |
101 |
Q |
| |
|
||||||||||||||||| |||| ||||| |||| |||||||| |||||||| |||||||||||||||||||| || ||| |||| ||||||||||||||| |
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|
| T |
30121942 |
tgttaaatgcttgcaagcgaagatgaaagttgcagatttggacttgattatatctgattgtattcattttctttccttacttcctaatgttagtgttgct |
30122041 |
T |
|
| Q |
102 |
tttgttagtagaa--ccaaaaacaaggctgcccatggcttggttaaagttgctattagtttaggttctaaatcttgggtgggtt |
183 |
Q |
| |
|
|||||| |||||| |||| ||||| |||||||||||||| |||||||||| | ||||||| ||||||||||| |||||||||| |
|
|
| T |
30122042 |
tttgttggtagaacgccaagaacaaagctgcccatggcttagttaaagttgttgttagtttgggttctaaatcatgggtgggtt |
30122125 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 2 - 183
Target Start/End: Original strand, 30110656 - 30110839
Alignment:
| Q |
2 |
tgttaaatgcttgcaagggaagctgaaaattgctgatttggatttgattatttctgattgtattcattttctgtctttaattccgaatgttagtgttgct |
101 |
Q |
| |
|
||||||||||||||||| |||||||||| |||| ||||| | |||||||| |||||||||||||||||||| || ||| |||| ||||||||||||||| |
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|
| T |
30110656 |
tgttaaatgcttgcaagcgaagctgaaatttgcagatttatacttgattatatctgattgtattcattttctttccttacttcctaatgttagtgttgct |
30110755 |
T |
|
| Q |
102 |
tttgttagtagaa--ccaaaaacaaggctgcccatggcttggttaaagttgctattagtttaggttctaaatcttgggtgggtt |
183 |
Q |
| |
|
|||||| |||||| |||| ||||| |||||||||||||| |||||||||| | ||||||| ||||||||||| |||||||||| |
|
|
| T |
30110756 |
tttgttggtagaacgccaagaacaaagctgcccatggcttagttaaagttgttgttagtttgggttctaaatcatgggtgggtt |
30110839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 2 - 183
Target Start/End: Complemental strand, 30078044 - 30077864
Alignment:
| Q |
2 |
tgttaaatgcttgcaagggaagctgaaaattgctgatttggatttgattatttctgattgtattcattttctgtctttaattccgaatgttagtgttgct |
101 |
Q |
| |
|
||||||||||||||||| |||| ||||| |||| ||||| |||||||| |||||||||||||||||||| | || |||| ||||||||||||||| |
|
|
| T |
30078044 |
tgttaaatgcttgcaagcgaagatgaaagttgca---ttggacttgattatatctgattgtattcattttctttacatacttcctaatgttagtgttgct |
30077948 |
T |
|
| Q |
102 |
tttgttagtagaaccaaaaacaagg--ctgcccatggcttggttaaagttgctattagtttaggttctaaatcttgggtgggtt |
183 |
Q |
| |
|
|||||| |||||||||| ||||| | ||||||||||||| |||||| ||| | ||||||| ||||||||||| |||||||||| |
|
|
| T |
30077947 |
tttgttggtagaaccaagaacaaagagctgcccatggcttagttaaatttgttgttagtttgggttctaaatcatgggtgggtt |
30077864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 81; Significance: 6e-38; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 49 - 245
Target Start/End: Complemental strand, 15055743 - 15055547
Alignment:
| Q |
49 |
ttatttctgattgtattcattttctgtctttaattccgaatgttagtgttgcttttgttagtagaaccaaaaacaaggctgcccatggcttggttaaagt |
148 |
Q |
| |
|
|||| ||||||||||| |||||||| | |||| | || ||||| | |||||||||| ||||||||||||| ||||| ||||| |||||||||||| |||| |
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|
| T |
15055743 |
ttatctctgattgtatccattttctttttttactaccaaatgtaattgttgcttttattagtagaaccaagaacaaagctgctcatggcttggttgaagt |
15055644 |
T |
|
| Q |
149 |
tgctattagtttaggttctaaatcttgggtgggttgtgcccctgatcaaattgtagcaactgtttgtatggactctctttattctagttgaatgaaa |
245 |
Q |
| |
|
|||| ||| |||| | |||| |||||||||||||||| | ||||||||||||| ||| | |||||||| | | ||||||| ||||| |||||||||| |
|
|
| T |
15055643 |
tgctgttaatttaagctctagatcttgggtgggttgtactcctgatcaaattgcagccattgtttgtaagaattctctttcttctaattgaatgaaa |
15055547 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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