View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF5366_low_2 (Length: 344)
Name: NF5366_low_2
Description: NF5366
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF5366_low_2 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 324; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 324; E-Value: 0
Query Start/End: Original strand, 5 - 344
Target Start/End: Complemental strand, 2272731 - 2272392
Alignment:
| Q |
5 |
catatattcactttgtcttggacacgaacattaagtctgtccttaaacattattcattcttctgctatttatgaaaaagaatggtaaaattagacaccga |
104 |
Q |
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| T |
2272731 |
catatattcactttgtcttggacacgaacattaagtctgtccttaagcattattcattcttctgctatttatgaaaaagaatggtaaaattagacaccga |
2272632 |
T |
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| Q |
105 |
gccaaatctcgtaaattattctacattcctagagcgaggataaagatgaatcaatttccaccgtcaattcaataattataaactagtcagatgaattaaa |
204 |
Q |
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| T |
2272631 |
gccaaatctcgtaaattattctacattcctagagcgaggataaagatgaatcaatttccaccgtcaattcaataattataaactagtcagatgaattaaa |
2272532 |
T |
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| Q |
205 |
cagatagattcctcttggatttgtgtgaatccttgagcaaaactttctgatggatcatgaatcatgatctgtcaaatagccaaaccagagaagtctcaat |
304 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
2272531 |
cagatagattcctcttggatttgtgtgaatccttgagcaaaactttctgatggatcatgaatcatgatctgtaaaatagccaaaccagagaagtctcaat |
2272432 |
T |
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| Q |
305 |
tccaatcatttctgattattcacttgacaatacctattaa |
344 |
Q |
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||||||| ||||||||||||||||||||||||| |||||| |
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| T |
2272431 |
tccaatcctttctgattattcacttgacaatacatattaa |
2272392 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 130 - 204
Target Start/End: Original strand, 40772478 - 40772552
Alignment:
| Q |
130 |
ttcctagagcgaggataaagatgaatcaatttccaccgtcaattcaataattataaactagtcagatgaattaaa |
204 |
Q |
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|||||| |||||| ||||||| ||||||||||||| ||||||||||||| | ||||||||||||||| |||||| |
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| T |
40772478 |
ttcctaaagcgagaataaagaggaatcaatttccattgtcaattcaataactgtaaactagtcagatggattaaa |
40772552 |
T |
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