View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF5366_low_5 (Length: 276)

Name: NF5366_low_5

Description: NF5366

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF5366_low_5

[»] chr8 (2 HSPs)

Target: chr8 (Bit Score: 256; Significance: 1e-142; HSPs: 2)

Name: chr8

Description:

Target: chr8; HSP #1

Raw Score: 256; E-Value: 1e-142

Query Start/End: Original strand, 17 - 276

Target Start/End: Complemental strand, 41748235 - 41747976

Alignment:

Q	17	tcttttactgttacggattcacctccttctgaggaagaagtacaacattgaagtactgacgtggcagaaacaacgcattcatcgctgctggagtttataa	116	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	41748235	tcttttactgttacggattcacctccttctgaggaagaagtacaacattgaagtactgacgtggcagaaacaacgcattcatcgctgctggagtttataa	41748136	T

Q	117	caaccttctttgtcgtgggttgaatgaaattcgtaagcgcgtctgcaccacgtatttcaatggcggctttatcatactccatagcagcttcttcagcagt	216	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	41748135	caaccttctttgtcgtgggttgaatgaaattcgtaagcgcgtctgcaccacgtatttcaatggcggctttatcatactccatagcagcttcttcagcagt	41748036	T

Q	217	gttgtaagttcccaaccaccgtcgaaatttgattttggggtctcttatctccgccgccca	276	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	41748035	gttgtaagttcccaaccaccgtcgaaatttgagtttggggtctcttatctccgccgccca	41747976	T

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Target: chr8; HSP #2

Raw Score: 29; E-Value: 0.0000004

Query Start/End: Original strand, 202 - 234

Target Start/End: Complemental strand, 8585005 - 8584973

Alignment:

Q	202	agcttcttcagcagtgttgtaagttcccaacca	234	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	8585005	agcttcttcagcactgttgtaagttcccaacca	8584973	T

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